Cmc01g0018341 (gene) Melon (Charmono) v1.1

Overview
NameCmc01g0018341
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionUnknown protein
LocationCMiso1.1chr01: 16127393 .. 16128687 (+)
RNA-Seq ExpressionCmc01g0018341
SyntenyCmc01g0018341
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATAATCCACACCCTTCAAATTCAATCTCACTTTTGTAACTTTTACAATACAAAACAAATTATTATTACACTCAATACATACACAATATACCATTTCTGATCTCTCCCTCTGAATTTCTTTGATCTTCTTCTGATCTCCACTTGAAGTCTTTATTACAATAACAACAACAACAAAGTTTGAAGCTAATATACAAATATAATATAACATCAAACAAATTCCCCTATACTTACAGATGACAAAGAATTCAATATATATATATATATAAAGTGCTATAACATAGATAACACTCATCTTCAATAAGCATATAAACTAAATGTATTTAGTTTTCTTCTAATTAAGGTGTGGAACAGAAGGAGACTGGGGAGGAAATTTCTTGCCGAACTTTGGGTGAGAATAGTACTTTGGAGGGACAACAACCTTTGGAACTGGTGGACATGGTGGAAGCTTTGAAATTGGAGGGAGAATCTTATACCATGGATGCTTATAATATGGAGGAGACTCTGGCTTTTGTGGTGTTGGAGGCTTGTAAACAGGTGGTTTTGGCTTGTAAACCGGTGGCTTTGGCTTGTAAACCGGTGGCTTCGGCTCGTAAACCGGTGGCTTTGGCTCGTACACCGGTGGCTTCGGCTTGTAAACCGGTGGCTTCGGCTTGTAGACCGGTGGCTTTGGCTTGTAGACCGGTGGCTTTGGCTTGTAAACCGGTGGCTTCTGTGGTTTTTTCTTGTAAACTGGTACTGGTGGAGGCTTCTCTTCAACCGGTGGAGGCTTCTCTTCAACCGGTGGAGGCTTTTCGTAGACCGGAGGAGGCTTTTCGAGGACGGGGGGAGGTACCGAAACTTTAGGAGGGAACAAGGGATGGGTATACAAAGGAGGATGAGGAGGGAAAACAGGTAAAGTGAAAGGAGGCAAAGGAGGGTGATGATAATAATGATGCCAAAAGAAGGCAGAAACACAAGTTTCACTTTTGAATTTGATTCCATTAGGCAAACCAAATGTTTGTTTTCCTTTATCTTTGGATTTGATTACAATCATTGAAGCCATTTCTGAGCCATCGTGAGAAGGACAAGGAGTAGAAGAAGCACTGTGAAGTTGTGCAAAGCACTTTCCTTCCAAATTTTCATCTTTGTTCAAAACCTCAGTTGGAAGTAAGACTTTGAAGTTTCCTTCTTCATCTAGCTTTGCAACCCCTTTTCTTTCTATTGTTCCATCTTTTTGTTTGCAGTCAATGCTAACACTAAGCCCTGCCATTGGATTCAAGTTTATAACTTAGGTTCTAAAAAATGCCGAACTTCTT

mRNA sequence

CATAATCCACACCCTTCAAATTCAATCTCACTTTTGTAACTTTTACAATACAAAACAAATTATTATTACACTCAATACATACACAATATACCATTTCTGATCTCTCCCTCTGAATTTCTTTGATCTTCTTCTGATCTCCACTTGAAGTCTTTATTACAATAACAACAACAACAAAGTTTGAAGCTAATATACAAATATAATATAACATCAAACAAATTCCCCTATACTTACAGATGACAAAGAATTCAATATATATATATATATAAAGTGCTATAACATAGATAACACTCATCTTCAATAAGCATATAAACTAAATGTATTTAGTTTTCTTCTAATTAAGGTGTGGAACAGAAGGAGACTGGGGAGGAAATTTCTTGCCGAACTTTGGGTGAGAATAGTACTTTGGAGGGACAACAACCTTTGGAACTGGTGGACATGGTGGAAGCTTTGAAATTGGAGGGAGAATCTTATACCATGGATGCTTATAATATGGAGGAGACTCTGGCTTTTGTGGTGTTGGAGGCTTGTAAACAGGTGGTTTTGGCTTGTAAACCGGTGGCTTTGGCTTGTAAACCGGTGGCTTCGGCTCGTAAACCGGTGGCTTTGGCTCGTACACCGGTGGCTTCGGCTTGTAAACCGGTGGCTTCGGCTTGTAGACCGGTGGCTTTGGCTTGTAGACCGGTGGCTTTGGCTTGTAAACCGGTGGCTTCTGTGGTTTTTTCTTGTAAACTGGTACTGGTGGAGGCTTCTCTTCAACCGGTGGAGGCTTCTCTTCAACCGGTGGAGGCTTTTCGTAGACCGGAGGAGGCTTTTCGAGGACGGGGGGAGGTACCGAAACTTTAGGAGGGAACAAGGGATGGGTATACAAAGGAGGATGAGGAGGGAAAACAGGTAAAGTGAAAGGAGGCAAAGGAGGGTGATGATAATAATGATGCCAAAAGAAGGCAGAAACACAAGTTTCACTTTTGAATTTGATTCCATTAGGCAAACCAAATGTTTGTTTTCCTTTATCTTTGGATTTGATTACAATCATTGAAGCCATTTCTGAGCCATCGTGAGAAGGACAAGGAGTAGAAGAAGCACTGTGAAGTTGTGCAAAGCACTTTCCTTCCAAATTTTCATCTTTGTTCAAAACCTCAGTTGGAAGTAAGACTTTGAAGTTTCCTTCTTCATCTAGCTTTGCAACCCCTTTTCTTTCTATTGTTCCATCTTTTTGTTTGCAGTCAATGCTAACACTAAGCCCTGCCATTGGATTCAAGTTTATAACTTAGGTTCTAAAAAATGCCGAACTTCTT

Coding sequence (CDS)

ATGGTGGAAGCTTTGAAATTGGAGGGAGAATCTTATACCATGGATGCTTATAATATGGAGGAGACTCTGGCTTTTGTGGTGTTGGAGGCTTGTAAACAGGTGGTTTTGGCTTGTAAACCGGTGGCTTTGGCTTGTAAACCGGTGGCTTCGGCTCGTAAACCGGTGGCTTTGGCTCGTACACCGGTGGCTTCGGCTTGTAAACCGGTGGCTTCGGCTTGTAGACCGGTGGCTTTGGCTTGTAGACCGGTGGCTTTGGCTTGTAAACCGGTGGCTTCTGTGGTTTTTTCTTGTAAACTGGTACTGGTGGAGGCTTCTCTTCAACCGGTGGAGGCTTCTCTTCAACCGGTGGAGGCTTTTCGTAGACCGGAGGAGGCTTTTCGAGGACGGGGGGAGGTACCGAAACTTTAG

Protein sequence

MVEALKLEGESYTMDAYNMEETLAFVVLEACKQVVLACKPVALACKPVASARKPVALARTPVASACKPVASACRPVALACRPVALACKPVASVVFSCKLVLVEASLQPVEASLQPVEAFRRPEEAFRGRGEVPKL
Homology
[Close]
BLAST of Cmc01g0018341 vs. NCBI nr
Match: MBK7986840.1 (hypothetical protein [Ignavibacteria bacterium])

HSP 1 Score: 64.3 bits (155), Expect = 9.2e-07
Identity = 43/96 (44.79%), Postives = 57/96 (59.38%), Query Frame = 0 

Query: 30  ACKQVVLACKPVALACKPVASARKPVALARTPVASACKPVASACRPVALACRPVALACKP 89
           +C  V ++C PVA++C PVA +   VA++  PVA +C  VA +C PVA++C PVA++C P
Sbjct: 2   SCAPVAMSCTPVAMSCTPVAMSCALVAMSCAPVAMSCALVAMSCAPVAMSCAPVAMSCAP 61

Query: 90  VAS----VVFSCKLV-----LVEASLQPVEASLQPV 117
           VA     V  SC LV     LV  S  PV  S  PV
Sbjct: 62  VAMSCALVAMSCALVAMSCALVAMSCAPVAMSCAPV 97

[Close]
BLAST of Cmc01g0018341 vs. NCBI nr
Match: XP_042857858.1 (transcriptional regulatory protein AlgP-like [Penaeus japonicus])

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-04
Identity = 29/96 (30.21%), Postives = 61/96 (63.54%), Query Frame = 0 

Query: 27  VLEACKQVVLACKPVALACKPVASARKPVALARTPVASACKPVASACRPVALACRPVALA 86
           +  + K + ++ KP+A++ KP+A + KP+A +  P+A + KP+A + +P+A++ +P+A++
Sbjct: 20  IARSAKPIAMSAKPIAMSAKPIAMSAKPIARSAKPIARSAKPIARSAKPIAMSAKPIAMS 79

Query: 87  CKPVASVVFSCKLVLVEASLQPVEASLQPVEAFRRP 123
            KP+A    S K + + A  +P+  S +P+    +P
Sbjct: 80  AKPIA---MSAKPIAMSA--KPIARSAKPIARSAKP 110

[Close]
BLAST of Cmc01g0018341 vs. NCBI nr
Match: KAF8419854.1 (hypothetical protein EV426DRAFT_567039, partial [Tirmania nivea])

HSP 1 Score: 57.0 bits (136), Expect = 1.5e-04
Identity = 29/66 (43.94%), Postives = 41/66 (62.12%), Query Frame = 0 

Query: 27 VLEACKQVVLACKPVALACKPVASARKPVALARTPVASACKPVASACRPVALACRPVALA 86
          ++ AC  +V AC P+  AC P+ SA  P+  A +P+ SAC P+ SAC P+  AC P+  A
Sbjct: 6  LVSACSPLVSACSPLVSACSPLVSACSPLVSACSPLVSACSPLVSACSPLVSACSPLVSA 65

Query: 87 CKPVAS 93
          C P+ S
Sbjct: 66 CSPLIS 71

[Close]
BLAST of Cmc01g0018341 vs. NCBI nr
Match: MBR4653281.1 (hypothetical protein [Kiritimatiellae bacterium])

HSP 1 Score: 56.6 bits (135), Expect = 1.9e-04
Identity = 47/91 (51.65%), Postives = 52/91 (57.14%), Query Frame = 0 

Query: 3   EALKLEGESYTMDAYNMEETLAFVVLEACKQVVLACKPVALACKPVASARKPVALARTPV 62
           +A    GES   D    ++T A  V EA KQV  A KP A A KP A A KPVA A  PV
Sbjct: 27  KAAVASGESLLADLAVPKKTEAKPVAEAPKQVAEAPKPAAEAPKPAAEAPKPVAEAPKPV 86

Query: 63  ASACKPVASACRPVALACRPVALACKPVASV 94
           A   KP A A +PVA A +PVA A KPVA V
Sbjct: 87  AEVPKPAAEAPKPVAEAPKPVAEAPKPVAEV 117

[Close]
BLAST of Cmc01g0018341 vs. ExPASy TrEMBL
Match: A0A3Q3ELT8 (Uncharacterized protein OS=Labrus bergylta OX=56723 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.1e-05
Identity = 28/63 (44.44%), Postives = 35/63 (55.56%), Query Frame = 0 

Query: 31  CKQVVLACKPVALACKPVASARKPVALARTPVASACKPVASACRPVALACRPVALACKPV 90
           C  +   C P A  C P+AS   P A   +P+AS C P+AS C P+A  C P A  C P+
Sbjct: 74  CSHIASVCSPFASVCSPIASVCSPFASVCSPIASVCSPIASVCSPIASVCSPFASVCSPI 133

Query: 91  ASV 94
           ASV
Sbjct: 134 ASV 136

The following BLAST results are available for this feature:
BLAST of Cmc01g0018341 vs. NCBI nr
Match NameE-valueIdentityDescription
MBK7986840.19.2e-0744.79hypothetical protein [Ignavibacteria bacterium][more]
XP_042857858.11.1e-0430.21transcriptional regulatory protein AlgP-like [Penaeus japonicus][more]
KAF8419854.11.5e-0443.94hypothetical protein EV426DRAFT_567039, partial [Tirmania nivea][more]
MBR4653281.11.9e-0451.65hypothetical protein [Kiritimatiellae bacterium][more]
BLAST of Cmc01g0018341 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc01g0018341 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A3Q3ELT84.1e-0544.44Uncharacterized protein OS=Labrus bergylta OX=56723 PE=4 SV=1[more]
BLAST of Cmc01g0018341 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc01g0018341.1Cmc01g0018341.1mRNA