Cmc01g0017671 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0017671
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr01: 15573662 .. 15574177 (+)
RNA-Seq Expression	Cmc01g0017671
Synteny	Cmc01g0017671

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGAGTGTATCGATGGACTTCATTACAGGACTGCCCAGAACTCTAAAGGGCTATACAGTGATCTGGGTTGTTATCGACAAATCTGGGTTGTTGTCAACAGACTCACAAAATCAGCCCATTTCATTCCAGGGAAGTCCACTTACACTGCCAGTAAGTGGGGACAGTTATATATGACGAAGATAGTGAGACTGCATGGAGTACCCGTATCCATCATTTCAGACAGAGATGCTCGTTTCACATCGAAGTTCTGGAAAGGACTTCAGCTAGCCTTGGACACGAGGTTAGACTTCAGTACAGCTTTCCACCCTCAGATTGACGGTCAAACAAAGAGGTTGAACCAGGTTTTGGAAGATATGTTGCGAGCCTATGTTCTGGAGTTCTCAGGGAGTTGGGACTCTCACTTCCACTTGATGGAATTCGCTTATAATAACAGCTACCAGGCTACCATCGGCATGGCACAATTTGAGGCTCTGTATGGTAAGTGTTGCAGATCTTCTGTTTGTTGTGGTTGA

mRNA sequence

ATGGGAGAGTGTATCGATGGACTTCATTACAGGACTGCCCAGAACTCTAAAGGGCTATACAGTGATCTGGGTTGTTATCGACAAATCTGGGTTGTTGTCAACAGACTCACAAAATCAGCCCATTTCATTCCAGGGAAGTCCACTTACACTGCCAGTAAGTGGGGACAGTTATATATGACGAAGATAGTGAGACTGCATGGAGTACCCGTATCCATCATTTCAGACAGAGATGCTCGTTTCACATCGAAGTTCTGGAAAGGACTTCAGCTAGCCTTGGACACGAGGTTAGACTTCAGTACAGCTTTCCACCCTCAGATTGACGGTCAAACAAAGAGGTTGAACCAGGTTTTGGAAGATATGTTGCGAGCCTATGTTCTGGAGTTCTCAGGGAGTTGGGACTCTCACTTCCACTTGATGGAATTCGCTTATAATAACAGCTACCAGGCTACCATCGGCATGGCACAATTTGAGGCTCTGTATGGTAAGTGTTGCAGATCTTCTGTTTGTTGTGGTTGA

Coding sequence (CDS)

ATGGGAGAGTGTATCGATGGACTTCATTACAGGACTGCCCAGAACTCTAAAGGGCTATACAGTGATCTGGGTTGTTATCGACAAATCTGGGTTGTTGTCAACAGACTCACAAAATCAGCCCATTTCATTCCAGGGAAGTCCACTTACACTGCCAGTAAGTGGGGACAGTTATATATGACGAAGATAGTGAGACTGCATGGAGTACCCGTATCCATCATTTCAGACAGAGATGCTCGTTTCACATCGAAGTTCTGGAAAGGACTTCAGCTAGCCTTGGACACGAGGTTAGACTTCAGTACAGCTTTCCACCCTCAGATTGACGGTCAAACAAAGAGGTTGAACCAGGTTTTGGAAGATATGTTGCGAGCCTATGTTCTGGAGTTCTCAGGGAGTTGGGACTCTCACTTCCACTTGATGGAATTCGCTTATAATAACAGCTACCAGGCTACCATCGGCATGGCACAATTTGAGGCTCTGTATGGTAAGTGTTGCAGATCTTCTGTTTGTTGTGGTTGA

Protein sequence

MGECIDGLHYRTAQNSKGLYSDLGCYRQIWVVVNRLTKSAHFIPGKSTYTASKWGQLYMTKIVRLHGVPVSIISDRDARFTSKFWKGLQLALDTRLDFSTAFHPQIDGQTKRLNQVLEDMLRAYVLEFSGSWDSHFHLMEFAYNNSYQATIGMAQFEALYGKCCRSSVCCG

Homology

[Close]

BLAST of Cmc01g0017671 vs. NCBI nr
Match: KAA0043079.1 (pol protein [Cucumis melo var. makuwa] >TYK30802.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 293.5 bits (750), Expect = 1.2e-75
Identity = 143/171 (83.63%), Postives = 149/171 (87.13%), Query Frame = 0


Query: 1   MGECIDGLHYRTAQNSKGLYSDLGCYRQIWVVVNRLTKSAHFIPGKSTYTASKWGQLYMT 60
           M ECIDGLHYRTAQNSKG       Y  IWVVV+RLTKSAHFIPGKSTYT SKWGQLYM 
Sbjct: 3   MRECIDGLHYRTAQNSKG-------YTVIWVVVDRLTKSAHFIPGKSTYTVSKWGQLYMM 62

Query: 61  KIVRLHGVPVSIISDRDARFTSKFWKGLQLALDTRLDFSTAFHPQIDGQTKRLNQVLEDM 120
           +IVRLHGVP+SI+SDRDARFTSKF KGLQLALD RLDFST FHPQ DGQT+RLNQVL+DM
Sbjct: 63  EIVRLHGVPISIVSDRDARFTSKFKKGLQLALDMRLDFSTYFHPQTDGQTERLNQVLKDM 122

Query: 121 LRAYVLEFSGSWDSHFHLMEFAYNNSYQATIGMAQFEALYGKCCRSSVCCG 172
           LRA VLEFSGSWDS  HLMEFAYNNSYQATIGMA FEALYGKCCRS VC G
Sbjct: 123 LRACVLEFSGSWDSQVHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCLG 166

[Close]

BLAST of Cmc01g0017671 vs. NCBI nr
Match: KAA0048442.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 283.1 bits (723), Expect = 1.6e-72
Identity = 136/154 (88.31%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 18   GLYSDLGCYRQIWVVVNRLTKSAHFIPGKSTYTASKWGQLYMTKIVRLHGVPVSIISDRD 77
            GL   L  Y  IWVVV+RLTKSAHF+PGKSTYTASKWGQLYMTKIVRLHGVPVSIISDRD
Sbjct: 1113 GLPKTLKGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTKIVRLHGVPVSIISDRD 1172

Query: 78   ARFTSKFWKGLQLALDTRLDFSTAFHPQIDGQTKRLNQVLEDMLRAYVLEFSGSWDSHFH 137
            ARFTSKFWKGLQLAL TRLDFSTAFHPQ DGQT+RLNQ+LEDMLRA VLEFSGSWDSH H
Sbjct: 1173 ARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLH 1232

Query: 138  LMEFAYNNSYQATIGMAQFEALYGKCCRSSVCCG 172
            LMEFAYNNSYQATIGMA FEALYGKCCRS VC G
Sbjct: 1233 LMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWG 1266

[Close]

BLAST of Cmc01g0017671 vs. NCBI nr
Match: KAA0031437.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 281.6 bits (719), Expect = 4.6e-72
Identity = 135/154 (87.66%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 18   GLYSDLGCYRQIWVVVNRLTKSAHFIPGKSTYTASKWGQLYMTKIVRLHGVPVSIISDRD 77
            GL   L  Y  IWVVV+RLTKSAHF+PGKSTYTASKWGQLYMT+IVRLHGVPVSIISDRD
Sbjct: 1134 GLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRD 1193

Query: 78   ARFTSKFWKGLQLALDTRLDFSTAFHPQIDGQTKRLNQVLEDMLRAYVLEFSGSWDSHFH 137
            ARFTSKFWKGLQLAL TRLDFSTAFHPQ DGQT+RLNQ+LEDMLRA VLEFSGSWDSH H
Sbjct: 1194 ARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLH 1253

Query: 138  LMEFAYNNSYQATIGMAQFEALYGKCCRSSVCCG 172
            LMEFAYNNSYQATIGMA FEALYGKCCRS VC G
Sbjct: 1254 LMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWG 1287

[Close]

BLAST of Cmc01g0017671 vs. NCBI nr
Match: KAA0033825.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 281.6 bits (719), Expect = 4.6e-72
Identity = 135/154 (87.66%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 18   GLYSDLGCYRQIWVVVNRLTKSAHFIPGKSTYTASKWGQLYMTKIVRLHGVPVSIISDRD 77
            GL   L  Y  IWVVV+RLTKSAHF+PGKSTYTASKWGQLYMT+IVRLHGVPVSIISDRD
Sbjct: 1798 GLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRD 1857

Query: 78   ARFTSKFWKGLQLALDTRLDFSTAFHPQIDGQTKRLNQVLEDMLRAYVLEFSGSWDSHFH 137
            ARFTSKFWKGLQLAL TRLDFSTAFHPQ DGQT+RLNQ+LEDMLRA VLEFSGSWDSH H
Sbjct: 1858 ARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLH 1917

Query: 138  LMEFAYNNSYQATIGMAQFEALYGKCCRSSVCCG 172
            LMEFAYNNSYQATIGMA FEALYGKCCRS VC G
Sbjct: 1918 LMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWG 1951

[Close]

BLAST of Cmc01g0017671 vs. NCBI nr
Match: KAA0025848.1 (pol protein [Cucumis melo var. makuwa] >KAA0035212.1 pol protein [Cucumis melo var. makuwa] >KAA0036593.1 pol protein [Cucumis melo var. makuwa] >KAA0036739.1 pol protein [Cucumis melo var. makuwa] >KAA0037408.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 281.6 bits (719), Expect = 4.6e-72
Identity = 135/154 (87.66%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 18   GLYSDLGCYRQIWVVVNRLTKSAHFIPGKSTYTASKWGQLYMTKIVRLHGVPVSIISDRD 77
            GL   L  Y  IWVVV+RLTKSAHF+PGKSTYTASKWGQLYMT+IVRLHGVPVSIISDRD
Sbjct: 1193 GLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRD 1252

Query: 78   ARFTSKFWKGLQLALDTRLDFSTAFHPQIDGQTKRLNQVLEDMLRAYVLEFSGSWDSHFH 137
            ARFTSKFWKGLQLAL TRLDFSTAFHPQ DGQT+RLNQ+LEDMLRA VLEFSGSWDSH H
Sbjct: 1253 ARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLH 1312

Query: 138  LMEFAYNNSYQATIGMAQFEALYGKCCRSSVCCG 172
            LMEFAYNNSYQATIGMA FEALYGKCCRS VC G
Sbjct: 1313 LMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWG 1346

[Close]

BLAST of Cmc01g0017671 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-18
Identity = 44/135 (32.59%), Postives = 73/135 (54.07%), Query Frame = 0


Query: 26   YRQIWVVVNRLTKSAHFIPGKSTYTASKWGQLYMTKIVRLHGVPVSIISDRDARFTSKFW 85
            Y  ++VVV+R +K A  +P   + TA +  +++  +++   G P  II+D D  FTS+ W
Sbjct: 1001 YNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTW 1060

Query: 86   KGLQLALDTRLDFSTAFHPQIDGQTKRLNQVLEDMLRAYVLEFSGSWDSHFHLMEFAYNN 145
            K      +  + FS  + PQ DGQT+R NQ +E +LR        +W  H  L++ +YNN
Sbjct: 1061 KDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNN 1120

Query: 146  SYQATIGMAQFEALY 161
            +  +   M  FE ++
Sbjct: 1121 AIHSATQMTPFEIVH 1135

[Close]

BLAST of Cmc01g0017671 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-18
Identity = 44/135 (32.59%), Postives = 73/135 (54.07%), Query Frame = 0


Query: 26   YRQIWVVVNRLTKSAHFIPGKSTYTASKWGQLYMTKIVRLHGVPVSIISDRDARFTSKFW 85
            Y  ++VVV+R +K A  +P   + TA +  +++  +++   G P  II+D D  FTS+ W
Sbjct: 1001 YNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTW 1060

Query: 86   KGLQLALDTRLDFSTAFHPQIDGQTKRLNQVLEDMLRAYVLEFSGSWDSHFHLMEFAYNN 145
            K      +  + FS  + PQ DGQT+R NQ +E +LR        +W  H  L++ +YNN
Sbjct: 1061 KDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNN 1120

Query: 146  SYQATIGMAQFEALY 161
            +  +   M  FE ++
Sbjct: 1121 AIHSATQMTPFEIVH 1135

[Close]

BLAST of Cmc01g0017671 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-18
Identity = 44/135 (32.59%), Postives = 73/135 (54.07%), Query Frame = 0


Query: 26   YRQIWVVVNRLTKSAHFIPGKSTYTASKWGQLYMTKIVRLHGVPVSIISDRDARFTSKFW 85
            Y  ++VVV+R +K A  +P   + TA +  +++  +++   G P  II+D D  FTS+ W
Sbjct: 1001 YNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTW 1060

Query: 86   KGLQLALDTRLDFSTAFHPQIDGQTKRLNQVLEDMLRAYVLEFSGSWDSHFHLMEFAYNN 145
            K      +  + FS  + PQ DGQT+R NQ +E +LR        +W  H  L++ +YNN
Sbjct: 1061 KDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNN 1120

Query: 146  SYQATIGMAQFEALY 161
            +  +   M  FE ++
Sbjct: 1121 AIHSATQMTPFEIVH 1135

[Close]

BLAST of Cmc01g0017671 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-18
Identity = 44/135 (32.59%), Postives = 73/135 (54.07%), Query Frame = 0


Query: 26   YRQIWVVVNRLTKSAHFIPGKSTYTASKWGQLYMTKIVRLHGVPVSIISDRDARFTSKFW 85
            Y  ++VVV+R +K A  +P   + TA +  +++  +++   G P  II+D D  FTS+ W
Sbjct: 1001 YNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTW 1060

Query: 86   KGLQLALDTRLDFSTAFHPQIDGQTKRLNQVLEDMLRAYVLEFSGSWDSHFHLMEFAYNN 145
            K      +  + FS  + PQ DGQT+R NQ +E +LR        +W  H  L++ +YNN
Sbjct: 1061 KDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNN 1120

Query: 146  SYQATIGMAQFEALY 161
            +  +   M  FE ++
Sbjct: 1121 AIHSATQMTPFEIVH 1135

[Close]

BLAST of Cmc01g0017671 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-18
Identity = 44/135 (32.59%), Postives = 73/135 (54.07%), Query Frame = 0


Query: 26   YRQIWVVVNRLTKSAHFIPGKSTYTASKWGQLYMTKIVRLHGVPVSIISDRDARFTSKFW 85
            Y  ++VVV+R +K A  +P   + TA +  +++  +++   G P  II+D D  FTS+ W
Sbjct: 1001 YNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTW 1060

Query: 86   KGLQLALDTRLDFSTAFHPQIDGQTKRLNQVLEDMLRAYVLEFSGSWDSHFHLMEFAYNN 145
            K      +  + FS  + PQ DGQT+R NQ +E +LR        +W  H  L++ +YNN
Sbjct: 1061 KDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNN 1120

Query: 146  SYQATIGMAQFEALY 161
            +  +   M  FE ++
Sbjct: 1121 AIHSATQMTPFEIVH 1135

[Close]

BLAST of Cmc01g0017671 vs. ExPASy TrEMBL
Match: A0A5D3E4G5 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold267G00280 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 5.7e-76
Identity = 143/171 (83.63%), Postives = 149/171 (87.13%), Query Frame = 0


Query: 1   MGECIDGLHYRTAQNSKGLYSDLGCYRQIWVVVNRLTKSAHFIPGKSTYTASKWGQLYMT 60
           M ECIDGLHYRTAQNSKG       Y  IWVVV+RLTKSAHFIPGKSTYT SKWGQLYM 
Sbjct: 3   MRECIDGLHYRTAQNSKG-------YTVIWVVVDRLTKSAHFIPGKSTYTVSKWGQLYMM 62

Query: 61  KIVRLHGVPVSIISDRDARFTSKFWKGLQLALDTRLDFSTAFHPQIDGQTKRLNQVLEDM 120
           +IVRLHGVP+SI+SDRDARFTSKF KGLQLALD RLDFST FHPQ DGQT+RLNQVL+DM
Sbjct: 63  EIVRLHGVPISIVSDRDARFTSKFKKGLQLALDMRLDFSTYFHPQTDGQTERLNQVLKDM 122

Query: 121 LRAYVLEFSGSWDSHFHLMEFAYNNSYQATIGMAQFEALYGKCCRSSVCCG 172
           LRA VLEFSGSWDS  HLMEFAYNNSYQATIGMA FEALYGKCCRS VC G
Sbjct: 123 LRACVLEFSGSWDSQVHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCLG 166

[Close]

BLAST of Cmc01g0017671 vs. ExPASy TrEMBL
Match: A0A5A7TY28 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold61G00240 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 7.7e-73
Identity = 136/154 (88.31%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 18   GLYSDLGCYRQIWVVVNRLTKSAHFIPGKSTYTASKWGQLYMTKIVRLHGVPVSIISDRD 77
            GL   L  Y  IWVVV+RLTKSAHF+PGKSTYTASKWGQLYMTKIVRLHGVPVSIISDRD
Sbjct: 1113 GLPKTLKGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTKIVRLHGVPVSIISDRD 1172

Query: 78   ARFTSKFWKGLQLALDTRLDFSTAFHPQIDGQTKRLNQVLEDMLRAYVLEFSGSWDSHFH 137
            ARFTSKFWKGLQLAL TRLDFSTAFHPQ DGQT+RLNQ+LEDMLRA VLEFSGSWDSH H
Sbjct: 1173 ARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLH 1232

Query: 138  LMEFAYNNSYQATIGMAQFEALYGKCCRSSVCCG 172
            LMEFAYNNSYQATIGMA FEALYGKCCRS VC G
Sbjct: 1233 LMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWG 1266

[Close]

BLAST of Cmc01g0017671 vs. ExPASy TrEMBL
Match: A0A5D3CQB5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001420 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.2e-72
Identity = 135/154 (87.66%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 18   GLYSDLGCYRQIWVVVNRLTKSAHFIPGKSTYTASKWGQLYMTKIVRLHGVPVSIISDRD 77
            GL   L  Y  IWVVV+RLTKSAHF+PGKSTYTASKWGQLYMT+IVRLHGVPVSIISDRD
Sbjct: 1193 GLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRD 1252

Query: 78   ARFTSKFWKGLQLALDTRLDFSTAFHPQIDGQTKRLNQVLEDMLRAYVLEFSGSWDSHFH 137
            ARFTSKFWKGLQLAL TRLDFSTAFHPQ DGQT+RLNQ+LEDMLRA VLEFSGSWDSH H
Sbjct: 1253 ARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLH 1312

Query: 138  LMEFAYNNSYQATIGMAQFEALYGKCCRSSVCCG 172
            LMEFAYNNSYQATIGMA FEALYGKCCRS VC G
Sbjct: 1313 LMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWG 1346

[Close]

BLAST of Cmc01g0017671 vs. ExPASy TrEMBL
Match: A0A5A7UBS1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13G00110 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.2e-72
Identity = 135/154 (87.66%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 18   GLYSDLGCYRQIWVVVNRLTKSAHFIPGKSTYTASKWGQLYMTKIVRLHGVPVSIISDRD 77
            GL   L  Y  IWVVV+RLTKSAHF+PGKSTYTASKWGQLYMT+IVRLHGVPVSIISDRD
Sbjct: 1193 GLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRD 1252

Query: 78   ARFTSKFWKGLQLALDTRLDFSTAFHPQIDGQTKRLNQVLEDMLRAYVLEFSGSWDSHFH 137
            ARFTSKFWKGLQLAL TRLDFSTAFHPQ DGQT+RLNQ+LEDMLRA VLEFSGSWDSH H
Sbjct: 1253 ARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLH 1312

Query: 138  LMEFAYNNSYQATIGMAQFEALYGKCCRSSVCCG 172
            LMEFAYNNSYQATIGMA FEALYGKCCRS VC G
Sbjct: 1313 LMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWG 1346

[Close]

BLAST of Cmc01g0017671 vs. ExPASy TrEMBL
Match: A0A5A7TEQ2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00410 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.2e-72
Identity = 135/154 (87.66%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 18   GLYSDLGCYRQIWVVVNRLTKSAHFIPGKSTYTASKWGQLYMTKIVRLHGVPVSIISDRD 77
            GL   L  Y  IWVVV+RLTKSAHF+PGKSTYTASKWGQLYMT+IVRLHGVPVSIISDRD
Sbjct: 1193 GLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRD 1252

Query: 78   ARFTSKFWKGLQLALDTRLDFSTAFHPQIDGQTKRLNQVLEDMLRAYVLEFSGSWDSHFH 137
            ARFTSKFWKGLQLAL TRLDFSTAFHPQ DGQT+RLNQ+LEDMLRA VLEFSGSWDSH H
Sbjct: 1253 ARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLH 1312

Query: 138  LMEFAYNNSYQATIGMAQFEALYGKCCRSSVCCG 172
            LMEFAYNNSYQATIGMA FEALYGKCCRS VC G
Sbjct: 1313 LMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWG 1346

The following BLAST results are available for this feature:

BLAST of Cmc01g0017671 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043079.1	1.2e-75	83.63	pol protein [Cucumis melo var. makuwa] >TYK30802.1 pol protein [Cucumis melo var...	[more]
KAA0048442.1	1.6e-72	88.31	pol protein [Cucumis melo var. makuwa]	[more]
KAA0031437.1	4.6e-72	87.66	pol protein [Cucumis melo var. makuwa]	[more]
KAA0033825.1	4.6e-72	87.66	pol protein [Cucumis melo var. makuwa]	[more]
KAA0025848.1	4.6e-72	87.66	pol protein [Cucumis melo var. makuwa] >KAA0035212.1 pol protein [Cucumis melo v...	[more]

BLAST of Cmc01g0017671 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UR07	1.1e-18	32.59	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	1.1e-18	32.59	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	1.1e-18	32.59	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	1.1e-18	32.59	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	1.1e-18	32.59	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc01g0017671 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E4G5	5.7e-76	83.63	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold267G00280 PE...	[more]
A0A5A7TY28	7.7e-73	88.31	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold61...	[more]
A0A5D3CQB5	2.2e-72	87.66	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7UBS1	2.2e-72	87.66	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]
A0A5A7TEQ2	2.2e-72	87.66	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold19...	[more]

BLAST of Cmc01g0017671 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 9..169 e-value: 1.4E-32 score: 114.6
None	No IPR available	PANTHER	PTHR46148:SF39	SUBFAMILY NOT NAMED	coord: 16..161
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 16..161
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..163 score: 12.25956
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 25..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0017671.1	Cmc01g0017671.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:1901800	positive regulation of proteasomal protein catabolic process
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000502	proteasome complex
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0036402	proteasome-activating activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008194	UDP-glycosyltransferase activity
molecular_function	GO:0008270	zinc ion binding