Cmc01g0017361 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0017361
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Protein FAR1-RELATED SEQUENCE 4
Location	CMiso1.1chr01: 15293509 .. 15293984 (+)
RNA-Seq Expression	Cmc01g0017361
Synteny	Cmc01g0017361

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAAGATATTACATGGTGATACAGTTGAATCGTATGCATTGATTCCAAGATTCTTTGATAAATTAGTTGAATCTAACCCAGGTATGATTATTTTTTTATATCAAATTTAAATTGATTTGCAGATAGATGTGGATAAACTAATATCACAGGCTATCTAGATAGACCAATATTGGCATGTTTGATATTCTTTATGTTCTTTTTTGTTTGTGCTGATAGAAATATGTTTTTAATTATTATAGGTACATACACTGCTTTAGAAATGGATGATAGTGGTCATTTCAAGTTTCGTTTTATGGCTTTTGGTGCATCAATTGAGGGGTGGAAATATTGTAGACCTATTATTTCTGTTGATGGGACATTTTTTAAGTGTAAGTTTGGTGGCATCTTATTAACAGCCTCCTCACAAGATGGTAACAATCAAATCTTCCCTCTTGCTTTTGCCACTATAGATTCTGAAAATGATCCATCATAG

mRNA sequence

ATGGTAAAGATATTACATGGTGATACAGTTGAATCGTATGCATTGATTCCAAGATTCTTTGATAAATTAGTTGAATCTAACCCAGGTACATACACTGCTTTAGAAATGGATGATAGTGGTCATTTCAAGTTTCGTTTTATGGCTTTTGGTGCATCAATTGAGGGGTGGAAATATTGTAGACCTATTATTTCTGTTGATGGGACATTTTTTAAGTGTAAGTTTGGTGGCATCTTATTAACAGCCTCCTCACAAGATGGTAACAATCAAATCTTCCCTCTTGCTTTTGCCACTATAGATTCTGAAAATGATCCATCATAG

Coding sequence (CDS)

ATGGTAAAGATATTACATGGTGATACAGTTGAATCGTATGCATTGATTCCAAGATTCTTTGATAAATTAGTTGAATCTAACCCAGGTACATACACTGCTTTAGAAATGGATGATAGTGGTCATTTCAAGTTTCGTTTTATGGCTTTTGGTGCATCAATTGAGGGGTGGAAATATTGTAGACCTATTATTTCTGTTGATGGGACATTTTTTAAGTGTAAGTTTGGTGGCATCTTATTAACAGCCTCCTCACAAGATGGTAACAATCAAATCTTCCCTCTTGCTTTTGCCACTATAGATTCTGAAAATGATCCATCATAG

Protein sequence

MVKILHGDTVESYALIPRFFDKLVESNPGTYTALEMDDSGHFKFRFMAFGASIEGWKYCRPIISVDGTFFKCKFGGILLTASSQDGNNQIFPLAFATIDSENDPS

Homology

[Close]

BLAST of Cmc01g0017361 vs. NCBI nr
Match: TYK02872.1 (protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa])

HSP 1 Score: 198.7 bits (504), Expect = 2.4e-47
Identity = 94/105 (89.52%), Postives = 97/105 (92.38%), Query Frame = 0


Query: 1   MVKILHGDTVESYALIPRFFDKLVESNPGTYTALEMDDSGHFKFRFMAFGASIEGWKYCR 60
           MVKILHGDTVESYALIPRFFDKLVESNPGT TALEMDDSGHFKF FMAFGASIEGWKYC+
Sbjct: 53  MVKILHGDTVESYALIPRFFDKLVESNPGTCTALEMDDSGHFKFCFMAFGASIEGWKYCK 112

Query: 61  PIISVDGTFFKCKFGGILLTASSQDGNNQIFPLAFATIDSENDPS 106
           PII VDG F KCKFGGILLTASSQDGNNQIFPLAF  +DS+ND S
Sbjct: 113 PIIYVDGKFLKCKFGGILLTASSQDGNNQIFPLAFTIVDSKNDVS 157

[Close]

BLAST of Cmc01g0017361 vs. NCBI nr
Match: TYK01612.1 (uncharacterized protein E5676_scaffold451G002110 [Cucumis melo var. makuwa])

HSP 1 Score: 198.4 bits (503), Expect = 3.2e-47
Identity = 94/105 (89.52%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 1   MVKILHGDTVESYALIPRFFDKLVESNPGTYTALEMDDSGHFKFRFMAFGASIEGWKYCR 60
           MVKILH DTVESY LIPRFFDKLVESNPGT TALEMDD+GHFKF FMAFGASIEGWKYCR
Sbjct: 40  MVKILHNDTVESYVLIPRFFDKLVESNPGTCTALEMDDNGHFKFCFMAFGASIEGWKYCR 99

Query: 61  PIISVDGTFFKCKFGGILLTASSQDGNNQIFPLAFATIDSENDPS 106
           PIISVD TF KCKFGGILLT SSQDGNNQIFPLAFA +DSEND S
Sbjct: 100 PIISVDETFLKCKFGGILLTTSSQDGNNQIFPLAFAIVDSENDAS 144

[Close]

BLAST of Cmc01g0017361 vs. NCBI nr
Match: KAA0047748.1 (uncharacterized protein E6C27_scaffold1059G00070 [Cucumis melo var. makuwa] >TYK02382.1 uncharacterized protein E5676_scaffold155G00850 [Cucumis melo var. makuwa])

HSP 1 Score: 196.8 bits (499), Expect = 9.2e-47
Identity = 94/105 (89.52%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 1   MVKILHGDTVESYALIPRFFDKLVESNPGTYTALEMDDSGHFKFRFMAFGASIEGWKYCR 60
           MVKILHGDTVE YALIPRFFDKLVESNPGT TALEMDD+GHFKF FM FGASIEGWKYCR
Sbjct: 169 MVKILHGDTVELYALIPRFFDKLVESNPGTCTALEMDDNGHFKFCFMDFGASIEGWKYCR 228

Query: 61  PIISVDGTFFKCKFGGILLTASSQDGNNQIFPLAFATIDSENDPS 106
           PIISVD TF KCKFGGI LTASSQDGNNQIFPLAFA +DSEND S
Sbjct: 229 PIISVDRTFLKCKFGGIRLTASSQDGNNQIFPLAFAIVDSENDAS 273

[Close]

BLAST of Cmc01g0017361 vs. NCBI nr
Match: KAA0040149.1 (protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 194.1 bits (492), Expect = 6.0e-46
Identity = 94/105 (89.52%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 1   MVKILHGDTVESYALIPRFFDKLVESNPGTYTALEMDDSGHFKFRFMAFGASIEGWKYCR 60
           MVKILHGDTVESYALI  FFDKLVESNPGT  ALEMDDSGHFKF FMAFGASIEGWKYCR
Sbjct: 1   MVKILHGDTVESYALILGFFDKLVESNPGTCIALEMDDSGHFKFCFMAFGASIEGWKYCR 60

Query: 61  PIISVDGTFFKCKFGGILLTASSQDGNNQIFPLAFATIDSENDPS 106
           PIISVDGTF KCKFGGI LTASSQD NNQIFPLAFA +DSEND S
Sbjct: 61  PIISVDGTFLKCKFGGIPLTASSQDSNNQIFPLAFAIVDSENDAS 105

[Close]

BLAST of Cmc01g0017361 vs. NCBI nr
Match: TYK14840.1 (protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 194.1 bits (492), Expect = 6.0e-46
Identity = 94/105 (89.52%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 1   MVKILHGDTVESYALIPRFFDKLVESNPGTYTALEMDDSGHFKFRFMAFGASIEGWKYCR 60
           MVKILHGDTVESYALI  FFDKLVESNPGT  ALEMDDSGHFKF FMAFGASIEGWKYCR
Sbjct: 105 MVKILHGDTVESYALILGFFDKLVESNPGTCIALEMDDSGHFKFCFMAFGASIEGWKYCR 164

Query: 61  PIISVDGTFFKCKFGGILLTASSQDGNNQIFPLAFATIDSENDPS 106
           PIISVDGTF KCKFGGI LTASSQD NNQIFPLAFA +DSEND S
Sbjct: 165 PIISVDGTFLKCKFGGIPLTASSQDSNNQIFPLAFAIVDSENDAS 209

[Close]

BLAST of Cmc01g0017361 vs. ExPASy TrEMBL
Match: A0A5D3BVN2 (Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold968G00010 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.2e-47
Identity = 94/105 (89.52%), Postives = 97/105 (92.38%), Query Frame = 0


Query: 1   MVKILHGDTVESYALIPRFFDKLVESNPGTYTALEMDDSGHFKFRFMAFGASIEGWKYCR 60
           MVKILHGDTVESYALIPRFFDKLVESNPGT TALEMDDSGHFKF FMAFGASIEGWKYC+
Sbjct: 53  MVKILHGDTVESYALIPRFFDKLVESNPGTCTALEMDDSGHFKFCFMAFGASIEGWKYCK 112

Query: 61  PIISVDGTFFKCKFGGILLTASSQDGNNQIFPLAFATIDSENDPS 106
           PII VDG F KCKFGGILLTASSQDGNNQIFPLAF  +DS+ND S
Sbjct: 113 PIIYVDGKFLKCKFGGILLTASSQDGNNQIFPLAFTIVDSKNDVS 157

[Close]

BLAST of Cmc01g0017361 vs. ExPASy TrEMBL
Match: A0A5D3BS45 (MULE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G002110 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.5e-47
Identity = 94/105 (89.52%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 1   MVKILHGDTVESYALIPRFFDKLVESNPGTYTALEMDDSGHFKFRFMAFGASIEGWKYCR 60
           MVKILH DTVESY LIPRFFDKLVESNPGT TALEMDD+GHFKF FMAFGASIEGWKYCR
Sbjct: 40  MVKILHNDTVESYVLIPRFFDKLVESNPGTCTALEMDDNGHFKFCFMAFGASIEGWKYCR 99

Query: 61  PIISVDGTFFKCKFGGILLTASSQDGNNQIFPLAFATIDSENDPS 106
           PIISVD TF KCKFGGILLT SSQDGNNQIFPLAFA +DSEND S
Sbjct: 100 PIISVDETFLKCKFGGILLTTSSQDGNNQIFPLAFAIVDSENDAS 144

[Close]

BLAST of Cmc01g0017361 vs. ExPASy TrEMBL
Match: A0A5D3BUA2 (MULE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00850 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 4.4e-47
Identity = 94/105 (89.52%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 1   MVKILHGDTVESYALIPRFFDKLVESNPGTYTALEMDDSGHFKFRFMAFGASIEGWKYCR 60
           MVKILHGDTVE YALIPRFFDKLVESNPGT TALEMDD+GHFKF FM FGASIEGWKYCR
Sbjct: 169 MVKILHGDTVELYALIPRFFDKLVESNPGTCTALEMDDNGHFKFCFMDFGASIEGWKYCR 228

Query: 61  PIISVDGTFFKCKFGGILLTASSQDGNNQIFPLAFATIDSENDPS 106
           PIISVD TF KCKFGGI LTASSQDGNNQIFPLAFA +DSEND S
Sbjct: 229 PIISVDRTFLKCKFGGIRLTASSQDGNNQIFPLAFAIVDSENDAS 273

[Close]

BLAST of Cmc01g0017361 vs. ExPASy TrEMBL
Match: A0A5D3CTS7 (Protein FAR1-RELATED SEQUENCE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold461G00040 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.9e-46
Identity = 94/105 (89.52%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 1   MVKILHGDTVESYALIPRFFDKLVESNPGTYTALEMDDSGHFKFRFMAFGASIEGWKYCR 60
           MVKILHGDTVESYALI  FFDKLVESNPGT  ALEMDDSGHFKF FMAFGASIEGWKYCR
Sbjct: 105 MVKILHGDTVESYALILGFFDKLVESNPGTCIALEMDDSGHFKFCFMAFGASIEGWKYCR 164

Query: 61  PIISVDGTFFKCKFGGILLTASSQDGNNQIFPLAFATIDSENDPS 106
           PIISVDGTF KCKFGGI LTASSQD NNQIFPLAFA +DSEND S
Sbjct: 165 PIISVDGTFLKCKFGGIPLTASSQDSNNQIFPLAFAIVDSENDAS 209

[Close]

BLAST of Cmc01g0017361 vs. ExPASy TrEMBL
Match: A0A5A7TFW3 (Protein FAR1-RELATED SEQUENCE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2764G00030 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.9e-46
Identity = 94/105 (89.52%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 1   MVKILHGDTVESYALIPRFFDKLVESNPGTYTALEMDDSGHFKFRFMAFGASIEGWKYCR 60
           MVKILHGDTVESYALI  FFDKLVESNPGT  ALEMDDSGHFKF FMAFGASIEGWKYCR
Sbjct: 1   MVKILHGDTVESYALILGFFDKLVESNPGTCIALEMDDSGHFKFCFMAFGASIEGWKYCR 60

Query: 61  PIISVDGTFFKCKFGGILLTASSQDGNNQIFPLAFATIDSENDPS 106
           PIISVDGTF KCKFGGI LTASSQD NNQIFPLAFA +DSEND S
Sbjct: 61  PIISVDGTFLKCKFGGIPLTASSQDSNNQIFPLAFAIVDSENDAS 105

[Close]

BLAST of Cmc01g0017361 vs. TAIR 10
Match: AT1G49920.1 (MuDR family transposase )

HSP 1 Score: 65.5 bits (158), Expect = 3.0e-11
Identity = 41/101 (40.59%), Postives = 54/101 (53.47%), Query Frame = 0


Query: 2   VKILHGDTVESYALIPRFFDKLVESNPGTYTALEMD----DSGHFKFR--FMAFGASIEG 61
           +K   GD  +S+ LIP+    L  SN G     + D    D  H  FR  F AF  SI+G
Sbjct: 316 IKRFFGDWDQSFRLIPKLMSVLHSSN-GLLVDWQYDSLTHDPEHASFRGLFWAFSQSIQG 375

Query: 62  WKYCRPIISVDGTFFKCKFGGILLTASSQDGNNQIFPLAFA 97
           +++CRP+I VD      K+   L+ AS+ D  NQ FPLAFA
Sbjct: 376 FQHCRPLIVVDTKNLGGKYKMKLMIASAFDATNQYFPLAFA 415

[Close]

BLAST of Cmc01g0017361 vs. TAIR 10
Match: AT1G64260.1 (MuDR family transposase )

HSP 1 Score: 62.0 bits (149), Expect = 3.3e-10
Identity = 34/100 (34.00%), Postives = 51/100 (51.00%), Query Frame = 0


Query: 1   MVKILHGDTVESYALIPRFFDKLVESN----PGTYTALEMDDSGHFKFRFMAFGASIEGW 60
           ++K + GD  +S+ ++P+       SN       Y      D   F+  F +F  SIEG+
Sbjct: 313 VIKRVFGDEDQSFRVMPKLISAFHSSNGLLVDWQYDLFPNPDFASFRGVFWSFSQSIEGF 372

Query: 61  KYCRPIISVDGTFFKCKFGGILLTASSQDGNNQIFPLAFA 97
           ++CRP+I VD      K+   L+ AS  D  N+ FPLAFA
Sbjct: 373 QHCRPLIVVDTKSLNGKYQLKLMIASGVDAANKFFPLAFA 412

[Close]

BLAST of Cmc01g0017361 vs. TAIR 10
Match: AT1G64255.1 (MuDR family transposase )

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-09
Identity = 35/99 (35.35%), Postives = 49/99 (49.49%), Query Frame = 0


Query: 2   VKILHGDTVESYALIPRFFDKLVESN----PGTYTALEMDDSGHFKFRFMAFGASIEGWK 61
           +K + GD  +S+   P+    L  SN       Y      +   F   F AF  SIEG++
Sbjct: 321 IKRVFGDWDQSFEDFPKLMSALCSSNGLLVDWKYDLFPNPNFASFCGVFWAFPQSIEGFQ 380

Query: 62  YCRPIISVDGTFFKCKFGGILLTASSQDGNNQIFPLAFA 97
           +CRP+I VD     C++   L+ AS  D  N+ FPLAFA
Sbjct: 381 HCRPLIVVDTKNLNCEYQLKLMIASGVDAANKYFPLAFA 419

The following BLAST results are available for this feature:

BLAST of Cmc01g0017361 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK02872.1	2.4e-47	89.52	protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa]	[more]
TYK01612.1	3.2e-47	89.52	uncharacterized protein E5676_scaffold451G002110 [Cucumis melo var. makuwa]	[more]
KAA0047748.1	9.2e-47	89.52	uncharacterized protein E6C27_scaffold1059G00070 [Cucumis melo var. makuwa] >TYK...	[more]
KAA0040149.1	6.0e-46	89.52	protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa]	[more]
TYK14840.1	6.0e-46	89.52	protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa]	[more]

BLAST of Cmc01g0017361 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc01g0017361 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BVN2	1.2e-47	89.52	Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3BS45	1.5e-47	89.52	MULE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5D3BUA2	4.4e-47	89.52	MULE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5D3CTS7	2.9e-46	89.52	Protein FAR1-RELATED SEQUENCE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7TFW3	2.9e-46	89.52	Protein FAR1-RELATED SEQUENCE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of Cmc01g0017361 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49920.1	3.0e-11	40.59	MuDR family transposase	[more]
AT1G64260.1	3.3e-10	34.00	MuDR family transposase	[more]
AT1G64255.1	1.3e-09	35.35	MuDR family transposase	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31973	POLYPROTEIN, PUTATIVE-RELATED	coord: 5..103
None	No IPR available	PANTHER	PTHR31973:SF153	FAMILY TRANSPOSASE, PUTATIVE ISOFORM 1-RELATED	coord: 5..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0017361.1	Cmc01g0017361.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding