Cmc01g0016871 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0016871
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3/gypsy retrotransposon protein
Location	CMiso1.1chr01: 14934710 .. 14935641 (+)
RNA-Seq Expression	Cmc01g0016871
Synteny	Cmc01g0016871

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGAGAAAGACATTGAGAAGACTGCTTTTAGGACTCATGAAAGCCATTATGAGTTCCTTGTCATACCGTTTGGCCTCACAAATGCACCGGCTACCTTCCAATCTCTCATTAACCAGGTATTTAAACCATTTCTAAGGAGATGTGTATTGGTTTTTTTTCTTATGATATACTTATTTATAGCGTTGATATTACTAAGCATGAGAAACATTTGGAAATGGTGTTTGCGGTCTTAAGAGATAACCGACTATTCCCCAATAAGAAGAAGTGTGTGATAGCACACTCGAAGATTCAGTATTTTGGGCATCGGATTTCCAACAAGCGGGTAGAAGTTGATGAGGACAAGATCAAAAGCATGGTTAATTGGCCCCAACCCAAGGATATAACTGGATTGAGGGGTTTCCTAGGCTTAACGGGGTATTATAGAAGGTTTGTGAAGGGTTATGGTGAAATTGCAGCCCCATTGACTCAACTCCTACAGAATAATGCATTTAGCAGGAATGAAGAAGCCATAGTAGCTTTTGAACAATTAAAAGCTGCCATGACTATCTTATCAGTCTTAGCCCTACCGGATTGGTCTTTGCCCTTTATTATAGAGACTGATGCATCATACTTTGGTTTGGGGGCCGTGCTGTCACAAAATGGGTATCCAATCGCTTTCTTTAGCCAGAAACTATCCTTGAAAGCACAGACCAAATCTATATATGAAAGGGAGTTGATGGCTGTGGTACTTGCTGTACAGAAGTGGAGACACTACTTAATGGGGAGGAAATTCACCATTATTTTTTATCAAAGAGCTTTGAAGTTCCTATTGGAACAAAGGGAAGTGCAACCTCAGTTTCAAAAGTGGTTAACTAAGCGGCTAGGGTATGACTTCGAAATTCTGTACTCGCCAGGATTGCAAAACAAAGCAACTGATGCTTTGTCTTGA

mRNA sequence

ATGAAGGAGAAAGACATTGAGAAGACTGCTTTTAGGACTCATGAAAGCCATTATGAGTTCCTTGTCATACCGTTTGGCCTCACAAATGCACCGGCTACCTTCCAATCTCTCATTAACCAGCATGAGAAACATTTGGAAATGGTGTTTGCGGTCTTAAGAGATAACCGACTATTCCCCAATAAGAAGAAGTGTGTGATAGCACACTCGAAGATTCAGTATTTTGGGCATCGGATTTCCAACAAGCGGGTAGAAGTTGATGAGGACAAGATCAAAAGCATGGTTAATTGGCCCCAACCCAAGGATATAACTGGATTGAGGGGTTTCCTAGGCTTAACGGGGTATTATAGAAGGTTTGTGAAGGGTTATGGTGAAATTGCAGCCCCATTGACTCAACTCCTACAGAATAATGCATTTAGCAGGAATGAAGAAGCCATAGTAGCTTTTGAACAATTAAAAGCTGCCATGACTATCTTATCAGTCTTAGCCCTACCGGATTGGTCTTTGCCCTTTATTATAGAGACTGATGCATCATACTTTGGTTTGGGGGCCGTGCTGTCACAAAATGGGTATCCAATCGCTTTCTTTAGCCAGAAACTATCCTTGAAAGCACAGACCAAATCTATATATGAAAGGGAGTTGATGGCTGTGGTACTTGCTGTACAGAAGTGGAGACACTACTTAATGGGGAGGAAATTCACCATTATTTTTTATCAAAGAGCTTTGAAGTTCCTATTGGAACAAAGGGAAGTGCAACCTCAGTTTCAAAAGTGGTTAACTAAGCGGCTAGGGTATGACTTCGAAATTCTGTACTCGCCAGGATTGCAAAACAAAGCAACTGATGCTTTGTCTTGA

Coding sequence (CDS)

ATGAAGGAGAAAGACATTGAGAAGACTGCTTTTAGGACTCATGAAAGCCATTATGAGTTCCTTGTCATACCGTTTGGCCTCACAAATGCACCGGCTACCTTCCAATCTCTCATTAACCAGCATGAGAAACATTTGGAAATGGTGTTTGCGGTCTTAAGAGATAACCGACTATTCCCCAATAAGAAGAAGTGTGTGATAGCACACTCGAAGATTCAGTATTTTGGGCATCGGATTTCCAACAAGCGGGTAGAAGTTGATGAGGACAAGATCAAAAGCATGGTTAATTGGCCCCAACCCAAGGATATAACTGGATTGAGGGGTTTCCTAGGCTTAACGGGGTATTATAGAAGGTTTGTGAAGGGTTATGGTGAAATTGCAGCCCCATTGACTCAACTCCTACAGAATAATGCATTTAGCAGGAATGAAGAAGCCATAGTAGCTTTTGAACAATTAAAAGCTGCCATGACTATCTTATCAGTCTTAGCCCTACCGGATTGGTCTTTGCCCTTTATTATAGAGACTGATGCATCATACTTTGGTTTGGGGGCCGTGCTGTCACAAAATGGGTATCCAATCGCTTTCTTTAGCCAGAAACTATCCTTGAAAGCACAGACCAAATCTATATATGAAAGGGAGTTGATGGCTGTGGTACTTGCTGTACAGAAGTGGAGACACTACTTAATGGGGAGGAAATTCACCATTATTTTTTATCAAAGAGCTTTGAAGTTCCTATTGGAACAAAGGGAAGTGCAACCTCAGTTTCAAAAGTGGTTAACTAAGCGGCTAGGGTATGACTTCGAAATTCTGTACTCGCCAGGATTGCAAAACAAAGCAACTGATGCTTTGTCTTGA

Protein sequence

MKEKDIEKTAFRTHESHYEFLVIPFGLTNAPATFQSLINQHEKHLEMVFAVLRDNRLFPNKKKCVIAHSKIQYFGHRISNKRVEVDEDKIKSMVNWPQPKDITGLRGFLGLTGYYRRFVKGYGEIAAPLTQLLQNNAFSRNEEAIVAFEQLKAAMTILSVLALPDWSLPFIIETDASYFGLGAVLSQNGYPIAFFSQKLSLKAQTKSIYERELMAVVLAVQKWRHYLMGRKFTIIFYQRALKFLLEQREVQPQFQKWLTKRLGYDFEILYSPGLQNKATDALS

Homology

[Close]

BLAST of Cmc01g0016871 vs. NCBI nr
Match: KAE8637561.1 (hypothetical protein CSA_017659 [Cucumis sativus])

HSP 1 Score: 459.9 bits (1182), Expect = 1.6e-125
Identity = 232/309 (75.08%), Postives = 256/309 (82.85%), Query Frame = 0


Query: 1   MKEKDIEKTAFRTHESHYEFLVIPFGLTNAPATFQSLINQ-------------------- 60
           M+E+D+EKTAFRTHE HYEFLV+PFGLTNAPATFQSL+NQ                    
Sbjct: 315 MQEEDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVY 374

Query: 61  ------HEKHLEMVFAVLRDNRLFPNKKKCVIAHSKIQYFGHRISNKRVEVDEDKIKSMV 120
                 HEKHL MVFAVLRDN LF NKKKCVIAHSKIQY GH IS+K V+ DE+KIK MV
Sbjct: 375 SKDISEHEKHLGMVFAVLRDNHLFANKKKCVIAHSKIQYLGHIISSKGVQADEEKIKDMV 434

Query: 121 NWPQPKDITGLRGFLGLTGYYRRFVKGYGEIAAPLTQLLQNNAFSRNEEAIVAFEQLKAA 180
            WPQPKD+TGLRGFLGL+GYYRRFVKGYGEIAAPLT+LLQ N+F  +E+A VAFE+LK A
Sbjct: 435 KWPQPKDVTGLRGFLGLSGYYRRFVKGYGEIAAPLTRLLQKNSFVWDEQATVAFEKLKTA 494

Query: 181 MTILSVLALPDWSLPFIIETDASYFGLGAVLSQNGYPIAFFSQKLSLKAQTKSIYERELM 240
           MT + VLALP+W LPF+IETDAS  GLGAVLSQNG+PIAFFSQKLS++AQ KSIYERELM
Sbjct: 495 MTTIPVLALPNWDLPFLIETDASGTGLGAVLSQNGHPIAFFSQKLSIRAQAKSIYERELM 554

Query: 241 AVVLAVQKWRHYLMGRKFTIIFYQRALKFLLEQREVQPQFQKWLTKRLGYDFEILYSPGL 284
            VVL+VQKWRHYL+GRKFTII  Q+ALKFLLEQREVQPQFQKWLTK LGYDFEILY PGL
Sbjct: 555 VVVLSVQKWRHYLLGRKFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL 614

[Close]

BLAST of Cmc01g0016871 vs. NCBI nr
Match: KGN62557.2 (hypothetical protein Csa_018739 [Cucumis sativus])

HSP 1 Score: 456.4 bits (1173), Expect = 1.7e-124
Identity = 232/309 (75.08%), Postives = 254/309 (82.20%), Query Frame = 0


Query: 1   MKEKDIEKTAFRTHESHYEFLVIPFGLTNAPATFQSLIN--------------------- 60
           MKE+D+EKTAFRTHE HYEFLV+PFGLTNAPATFQSL+N                     
Sbjct: 163 MKEEDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNLVFKPFLRRCVLVFFDDILIY 222

Query: 61  -----QHEKHLEMVFAVLRDNRLFPNKKKCVIAHSKIQYFGHRISNKRVEVDEDKIKSMV 120
                +HEKHL MVFAV+RDN+L  NKKKCVIAHS+IQY GH IS++ VE D DKIK MV
Sbjct: 223 STNLTEHEKHLAMVFAVMRDNQLVANKKKCVIAHSQIQYLGHLISSRGVEADGDKIKDMV 282

Query: 121 NWPQPKDITGLRGFLGLTGYYRRFVKGYGEIAAPLTQLLQNNAFSRNEEAIVAFEQLKAA 180
           NWPQPKD+TGLRGFLGLTGYYRRFVKGYGE+A PLT+LLQ N+F   EEA  AF++LK A
Sbjct: 283 NWPQPKDVTGLRGFLGLTGYYRRFVKGYGEMAEPLTKLLQKNSFLWGEEATEAFDKLKLA 342

Query: 181 MTILSVLALPDWSLPFIIETDASYFGLGAVLSQNGYPIAFFSQKLSLKAQTKSIYERELM 240
           MT L VLALPDW+LPFIIETDAS   LGAVLSQNG+PIAFFSQKLS +A+TKSIYERELM
Sbjct: 343 MTTLPVLALPDWNLPFIIETDASGIALGAVLSQNGHPIAFFSQKLSNRAKTKSIYERELM 402

Query: 241 AVVLAVQKWRHYLMGRKFTIIFYQRALKFLLEQREVQPQFQKWLTKRLGYDFEILYSPGL 284
           AVVL+VQKWRHYL+GRKFTII  QRALKFLLEQREVQPQFQKWLTK LGYDFEILY PGL
Sbjct: 403 AVVLSVQKWRHYLLGRKFTIISDQRALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL 462

[Close]

BLAST of Cmc01g0016871 vs. NCBI nr
Match: XP_031745419.1 (uncharacterized protein LOC116405630 [Cucumis sativus])

HSP 1 Score: 450.3 bits (1157), Expect = 1.2e-122
Identity = 227/309 (73.46%), Postives = 252/309 (81.55%), Query Frame = 0


Query: 1   MKEKDIEKTAFRTHESHYEFLVIPFGLTNAPATFQSLIN--------------------- 60
           M+E+D+EKTAF THE HYEFLV+PFGLTNAPATFQSL+N                     
Sbjct: 537 MREEDVEKTAFHTHEGHYEFLVMPFGLTNAPATFQSLMNEVFKPFLRRCVLVFFYDILVY 596

Query: 61  -----QHEKHLEMVFAVLRDNRLFPNKKKCVIAHSKIQYFGHRISNKRVEVDEDKIKSMV 120
                +H KHL MVFA+LRD+ LF N+ KCVIAHS++QY GH IS++ VE DEDKI+SMV
Sbjct: 597 SVDIDEHMKHLGMVFAILRDHELFANRSKCVIAHSQVQYLGHLISSRGVEADEDKIRSMV 656

Query: 121 NWPQPKDITGLRGFLGLTGYYRRFVKGYGEIAAPLTQLLQNNAFSRNEEAIVAFEQLKAA 180
           NWP+PKDITGLRGFLGLTGYYRRFVK YGEIAAPLT+LLQ NAF  NEEA +AF+QLK A
Sbjct: 657 NWPRPKDITGLRGFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAFHWNEEATIAFDQLKLA 716

Query: 181 MTILSVLALPDWSLPFIIETDASYFGLGAVLSQNGYPIAFFSQKLSLKAQTKSIYERELM 240
           MT L VLALPDWS PF IETDAS  GLGAVLSQ+G+PIAFFSQKLS +AQ KSIYERELM
Sbjct: 717 MTTLPVLALPDWSQPFTIETDASGVGLGAVLSQDGHPIAFFSQKLSPRAQGKSIYERELM 776

Query: 241 AVVLAVQKWRHYLMGRKFTIIFYQRALKFLLEQREVQPQFQKWLTKRLGYDFEILYSPGL 284
           AVVL+VQKWRHYL+GRKFTI+  Q+ALKFLLEQREVQPQFQKWLTK LGYDFEILY PGL
Sbjct: 777 AVVLSVQKWRHYLLGRKFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL 836

[Close]

BLAST of Cmc01g0016871 vs. NCBI nr
Match: KAE8637598.1 (hypothetical protein CSA_022681 [Cucumis sativus])

HSP 1 Score: 450.3 bits (1157), Expect = 1.2e-122
Identity = 227/309 (73.46%), Postives = 252/309 (81.55%), Query Frame = 0


Query: 1   MKEKDIEKTAFRTHESHYEFLVIPFGLTNAPATFQSLIN--------------------- 60
           M+E+D+EKTAF THE HYEFLV+PFGLTNAPATFQSL+N                     
Sbjct: 223 MREEDVEKTAFHTHEGHYEFLVMPFGLTNAPATFQSLMNEVFKPFLRRCVLVFFYDILVY 282

Query: 61  -----QHEKHLEMVFAVLRDNRLFPNKKKCVIAHSKIQYFGHRISNKRVEVDEDKIKSMV 120
                +H KHL MVFA+LRD+ LF N+ KCVIAHS++QY GH IS++ VE DEDKI+SMV
Sbjct: 283 SVDIDEHMKHLGMVFAILRDHELFANRSKCVIAHSQVQYLGHLISSRGVEADEDKIRSMV 342

Query: 121 NWPQPKDITGLRGFLGLTGYYRRFVKGYGEIAAPLTQLLQNNAFSRNEEAIVAFEQLKAA 180
           NWP+PKDITGLRGFLGLTGYYRRFVK YGEIAAPLT+LLQ NAF  NEEA +AF+QLK A
Sbjct: 343 NWPRPKDITGLRGFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAFHWNEEATIAFDQLKLA 402

Query: 181 MTILSVLALPDWSLPFIIETDASYFGLGAVLSQNGYPIAFFSQKLSLKAQTKSIYERELM 240
           MT L VLALPDWS PF IETDAS  GLGAVLSQ+G+PIAFFSQKLS +AQ KSIYERELM
Sbjct: 403 MTTLPVLALPDWSQPFTIETDASGVGLGAVLSQDGHPIAFFSQKLSPRAQGKSIYERELM 462

Query: 241 AVVLAVQKWRHYLMGRKFTIIFYQRALKFLLEQREVQPQFQKWLTKRLGYDFEILYSPGL 284
           AVVL+VQKWRHYL+GRKFTI+  Q+ALKFLLEQREVQPQFQKWLTK LGYDFEILY PGL
Sbjct: 463 AVVLSVQKWRHYLLGRKFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL 522

[Close]

BLAST of Cmc01g0016871 vs. NCBI nr
Match: TYK28944.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 447.2 bits (1149), Expect = 1.1e-121
Identity = 224/309 (72.49%), Postives = 252/309 (81.55%), Query Frame = 0


Query: 1    MKEKDIEKTAFRTHESHYEFLVIPFGLTNAPATFQSLINQ-------------------- 60
            M+E+DIEKTAFRTHE HYEF+V+PFGLTNAPATFQSL+NQ                    
Sbjct: 695  MREEDIEKTAFRTHEGHYEFVVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVY 754

Query: 61   ------HEKHLEMVFAVLRDNRLFPNKKKCVIAHSKIQYFGHRISNKRVEVDEDKIKSMV 120
                  HEKHL MVFA LRDN+L+ N+KKCV AHS+I Y GH IS   VE D+DK+KSM+
Sbjct: 755  SSDITEHEKHLGMVFATLRDNQLYANRKKCVFAHSQIHYLGHVISKHGVEADQDKVKSML 814

Query: 121  NWPQPKDITGLRGFLGLTGYYRRFVKGYGEIAAPLTQLLQNNAFSRNEEAIVAFEQLKAA 180
             WP+PKD+TGLRGFLGLTGYYRRFVKGYGEIAAPLT+LLQ NAF  +E A +AFE LK+A
Sbjct: 815  QWPKPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFKWDENATLAFESLKSA 874

Query: 181  MTILSVLALPDWSLPFIIETDASYFGLGAVLSQNGYPIAFFSQKLSLKAQTKSIYERELM 240
            M+ + VLALPDWSLPF+IETDAS  GLGAVLSQN +PIAFFSQKLS +AQ KSIYERELM
Sbjct: 875  MSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELM 934

Query: 241  AVVLAVQKWRHYLMGRKFTIIFYQRALKFLLEQREVQPQFQKWLTKRLGYDFEILYSPGL 284
            AVVL+VQKWRHYL+GR+FTI+  Q+ALKFLLEQREVQPQFQKWLTK LGYDFEILY PGL
Sbjct: 935  AVVLSVQKWRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL 994

[Close]

BLAST of Cmc01g0016871 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 2.7e-51
Identity = 116/311 (37.30%), Postives = 171/311 (54.98%), Query Frame = 0


Query: 1   MKEKDIEKTAFRTHESHYEFLVIPFGLTNAPATFQSLIN--------------------- 60
           M E+ I KTAF T   HYE+L +PFGL NAPATFQ  +N                     
Sbjct: 311 MDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIF 370

Query: 61  -----QHEKHLEMVFAVLRDNRLFPNKKKCVIAHSKIQYFGHRISNKRVEVDEDKIKSMV 120
                +H   +++VF  L D  L     KC     +  + GH ++   ++ +  K+K++V
Sbjct: 371 STSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIV 430

Query: 121 NWPQPKDITGLRGFLGLTGYYRRFVKGYGEIAAPLTQLLQNNA--FSRNEEAIVAFEQLK 180
           ++P P     +R FLGLTGYYR+F+  Y +IA P+T  L+      ++  E I AFE+LK
Sbjct: 431 SYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLK 490

Query: 181 AAMTILSVLALPDWSLPFIIETDASYFGLGAVLSQNGYPIAFFSQKLSLKAQTKSIYERE 240
           A +    +L LPD+   F++ TDAS   LGAVLSQNG+PI+F S+ L+      S  E+E
Sbjct: 491 ALIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKE 550

Query: 241 LMAVVLAVQKWRHYLMGRKFTIIFYQRALKFLLEQREVQPQFQKWLTKRLGYDFEILYSP 284
           L+A+V A + +RHYL+GR+F I    + L++L   +E   + ++W  +   Y F+I Y  
Sbjct: 551 LLAIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIK 610

[Close]

BLAST of Cmc01g0016871 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.7e-45
Identity = 108/311 (34.73%), Postives = 171/311 (54.98%), Query Frame = 0


Query: 1   MKEKDIEKTAFRTHESHYEFLVIPFGLTNAPATFQ--------SLINQH----------- 60
           M  + + KTAF T   HYE+L +PFGL NAPATFQ         L+N+H           
Sbjct: 312 MDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVF 371

Query: 61  ----EKHLE---MVFAVLRDNRLFPNKKKCVIAHSKIQYFGHRISNKRVEVDEDKIKSMV 120
               ++HL+   +VF  L    L     KC     +  + GH ++   ++ + +KI+++ 
Sbjct: 372 STSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQ 431

Query: 121 NWPQPKDITGLRGFLGLTGYYRRFVKGYGEIAAPLTQLLQNN--AFSRNEEAIVAFEQLK 180
            +P P     ++ FLGLTGYYR+F+  + +IA P+T+ L+ N    + N E   AF++LK
Sbjct: 432 KYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLK 491

Query: 181 AAMTILSVLALPDWSLPFIIETDASYFGLGAVLSQNGYPIAFFSQKLSLKAQTKSIYERE 240
             ++   +L +PD++  F + TDAS   LGAVLSQ+G+P+++ S+ L+      S  E+E
Sbjct: 492 YLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKE 551

Query: 241 LMAVVLAVQKWRHYLMGRKFTIIFYQRALKFLLEQREVQPQFQKWLTKRLGYDFEILYSP 284
           L+A+V A + +RHYL+GR F I    + L +L   ++   +  +W  K   +DF+I Y  
Sbjct: 552 LLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIK 611

[Close]

BLAST of Cmc01g0016871 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.2e-40
Identity = 105/327 (32.11%), Postives = 170/327 (51.99%), Query Frame = 0


Query: 1   MKEKDIEKTAFRTHESHYEFLVIPFGLTNAPATFQSLINQ-------------------- 60
           MKE DI KTAF T    YEFL +PFGL NAPA FQ +I+                     
Sbjct: 228 MKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVF 287

Query: 61  ------HEKHLEMVFAVLRDNRLFPNKKKCVIAHSKIQYFGHRISNKRVEVDEDKIKSMV 120
                 H K+L +V A L    L  N +K     +++++ G+ ++   ++ D  K++++ 
Sbjct: 288 SEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAIS 347

Query: 121 NWPQPKDITGLRGFLGLTGYYRRFVKGYGEIAAPLTQL-------LQNNAFSR-----NE 180
             P P  +  L+ FLG+T YYR+F++ Y ++A PLT L       ++++  S+     +E
Sbjct: 348 EMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDE 407

Query: 181 EAIVAFEQLKAAMTILSVLALPDWSLPFIIETDASYFGLGAVLSQNGY----PIAFFSQK 240
            A+ +F  LK+ +    +LA P ++ PF + TDAS + +GAVLSQ+      PIA+ S+ 
Sbjct: 408 TALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRS 467

Query: 241 LSLKAQTKSIYERELMAVVLAVQKWRHYLMGRKFTIIFY--QRALKFLLEQREVQPQFQK 284
           L+   +  +  E+E++A++ ++   R YL G   TI  Y   + L F L  R    + ++
Sbjct: 468 LNKTEENYATIEKEMLAIIWSLDNLRAYLYGAG-TIKVYTDHQPLTFALGNRNFNAKLKR 527

[Close]

BLAST of Cmc01g0016871 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 6.4e-37
Identity = 100/323 (30.96%), Postives = 160/323 (49.54%), Query Frame = 0


Query: 1   MKEKDIEKTAFRTHESHYEFLVIPFGLTNAPATFQSLI---------------------- 60
           + E D EKT+F  +   YEF  +PFGL NA + FQ  +                      
Sbjct: 287 LAEHDREKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIF 346

Query: 61  ----NQHEKHLEMVFAVLRDNRLFPNKKKCVIAHSKIQYFGHRISNKRVEVDEDKIKSMV 120
               + H +H++ V   L D  +  +++K       ++Y G  +S    + D +K+K++ 
Sbjct: 347 SENESDHVRHIDTVLKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQ 406

Query: 121 NWPQPKDITGLRGFLGLTGYYRRFVKGYGEIAAPLTQLL--QNNAFSR----------NE 180
            +P+P  +  +R FLGL  YYR F+K +  IA P+T +L  +N + S+          NE
Sbjct: 407 EYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNE 466

Query: 181 EAIVAFEQLKAAMTILSV-LALPDWSLPFIIETDASYFGLGAVLSQNGYPIAFFSQKLSL 240
               AF++L+  +    V L  PD+  PF + TDAS  G+GAVLSQ G PI   S+ L  
Sbjct: 467 TQRNAFQRLRNILASEDVILKYPDFKKPFDLTTDASASGIGAVLSQEGRPITMISRTLKQ 526

Query: 241 KAQTKSIYERELMAVVLAVQKWRHYLMG-RKFTIIFYQRALKFLLEQREVQPQFQKWLTK 284
             Q  +  EREL+A+V A+ K +++L G R+  I    + L F +  R    + ++W + 
Sbjct: 527 PEQNYATNERELLAIVWALGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWKSY 586

[Close]

BLAST of Cmc01g0016871 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.0e-34
Identity = 96/319 (30.09%), Postives = 154/319 (48.28%), Query Frame = 0


Query: 1   MKEKDIEKTAFRTHESHYEFLVIPFGLTNAPATFQSLIN--------------------- 60
           +++ D  K AFR     +E+LV+P+G++ APA FQ  IN                     
Sbjct: 512 VRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIH 571

Query: 61  -----QHEKHLEMVFAVLRDNRLFPNKKKCVIAHSKIQYFGHRISNKRVEVDEDKIKSMV 120
                +H KH++ V   L++  L  N+ KC    S++++ G+ IS K     ++ I  ++
Sbjct: 572 SKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVL 631

Query: 121 NWPQPKDITGLRGFLGLTGYYRRFVKGYGEIAAPLTQLLQNNA-FSRNEEAIVAFEQLKA 180
            W QPK+   LR FLG   Y R+F+    ++  PL  LL+ +  +        A E +K 
Sbjct: 632 QWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQ 691

Query: 181 AMTILSVLALPDWSLPFIIETDASYFGLGAVLSQNG-----YPIAFFSQKLSLKAQTKSI 240
            +    VL   D+S   ++ETDAS   +GAVLSQ       YP+ ++S K+S      S+
Sbjct: 692 CLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSV 751

Query: 241 YERELMAVVLAVQKWRHYLMG--RKFTIIFYQRAL--KFLLEQREVQPQFQKWLTKRLGY 284
            ++E++A++ +++ WRHYL      F I+   R L  +   E      +  +W      +
Sbjct: 752 SDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDF 811

[Close]

BLAST of Cmc01g0016871 vs. ExPASy TrEMBL
Match: A0A5D3E325 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold426G00690 PE=4 SV=1)

HSP 1 Score: 447.2 bits (1149), Expect = 5.1e-122
Identity = 224/309 (72.49%), Postives = 252/309 (81.55%), Query Frame = 0


Query: 1    MKEKDIEKTAFRTHESHYEFLVIPFGLTNAPATFQSLINQ-------------------- 60
            M+E+DIEKTAFRTHE HYEF+V+PFGLTNAPATFQSL+NQ                    
Sbjct: 695  MREEDIEKTAFRTHEGHYEFVVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVY 754

Query: 61   ------HEKHLEMVFAVLRDNRLFPNKKKCVIAHSKIQYFGHRISNKRVEVDEDKIKSMV 120
                  HEKHL MVFA LRDN+L+ N+KKCV AHS+I Y GH IS   VE D+DK+KSM+
Sbjct: 755  SSDITEHEKHLGMVFATLRDNQLYANRKKCVFAHSQIHYLGHVISKHGVEADQDKVKSML 814

Query: 121  NWPQPKDITGLRGFLGLTGYYRRFVKGYGEIAAPLTQLLQNNAFSRNEEAIVAFEQLKAA 180
             WP+PKD+TGLRGFLGLTGYYRRFVKGYGEIAAPLT+LLQ NAF  +E A +AFE LK+A
Sbjct: 815  QWPKPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFKWDENATLAFESLKSA 874

Query: 181  MTILSVLALPDWSLPFIIETDASYFGLGAVLSQNGYPIAFFSQKLSLKAQTKSIYERELM 240
            M+ + VLALPDWSLPF+IETDAS  GLGAVLSQN +PIAFFSQKLS +AQ KSIYERELM
Sbjct: 875  MSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELM 934

Query: 241  AVVLAVQKWRHYLMGRKFTIIFYQRALKFLLEQREVQPQFQKWLTKRLGYDFEILYSPGL 284
            AVVL+VQKWRHYL+GR+FTI+  Q+ALKFLLEQREVQPQFQKWLTK LGYDFEILY PGL
Sbjct: 935  AVVLSVQKWRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL 994

[Close]

BLAST of Cmc01g0016871 vs. ExPASy TrEMBL
Match: A0A5D3BBH7 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold549G00100 PE=4 SV=1)

HSP 1 Score: 447.2 bits (1149), Expect = 5.1e-122
Identity = 224/309 (72.49%), Postives = 252/309 (81.55%), Query Frame = 0


Query: 1    MKEKDIEKTAFRTHESHYEFLVIPFGLTNAPATFQSLINQ-------------------- 60
            M+E+DIEKTAFRTHE HYEF+V+PFGLTNAPATFQSL+NQ                    
Sbjct: 695  MREEDIEKTAFRTHEGHYEFVVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVY 754

Query: 61   ------HEKHLEMVFAVLRDNRLFPNKKKCVIAHSKIQYFGHRISNKRVEVDEDKIKSMV 120
                  HEKHL MVFA LRDN+L+ N+KKCV AHS+I Y GH IS   VE D+DK+KSM+
Sbjct: 755  SSDITEHEKHLGMVFATLRDNQLYANRKKCVFAHSQIHYLGHVISKHGVEADQDKVKSML 814

Query: 121  NWPQPKDITGLRGFLGLTGYYRRFVKGYGEIAAPLTQLLQNNAFSRNEEAIVAFEQLKAA 180
             WP+PKD+TGLRGFLGLTGYYRRFVKGYGEIAAPLT+LLQ NAF  +E A +AFE LK+A
Sbjct: 815  QWPKPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFKWDENATLAFESLKSA 874

Query: 181  MTILSVLALPDWSLPFIIETDASYFGLGAVLSQNGYPIAFFSQKLSLKAQTKSIYERELM 240
            M+ + VLALPDWSLPF+IETDAS  GLGAVLSQN +PIAFFSQKLS +AQ KSIYERELM
Sbjct: 875  MSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELM 934

Query: 241  AVVLAVQKWRHYLMGRKFTIIFYQRALKFLLEQREVQPQFQKWLTKRLGYDFEILYSPGL 284
            AVVL+VQKWRHYL+GR+FTI+  Q+ALKFLLEQREVQPQFQKWLTK LGYDFEILY PGL
Sbjct: 935  AVVLSVQKWRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL 994

[Close]

BLAST of Cmc01g0016871 vs. ExPASy TrEMBL
Match: A0A5D3DZK6 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00310 PE=4 SV=1)

HSP 1 Score: 447.2 bits (1149), Expect = 5.1e-122
Identity = 224/309 (72.49%), Postives = 252/309 (81.55%), Query Frame = 0


Query: 1    MKEKDIEKTAFRTHESHYEFLVIPFGLTNAPATFQSLINQ-------------------- 60
            M+E+DIEKTAFRTHE HYEF+V+PFGLTNAPATFQSL+NQ                    
Sbjct: 695  MREEDIEKTAFRTHEGHYEFVVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVY 754

Query: 61   ------HEKHLEMVFAVLRDNRLFPNKKKCVIAHSKIQYFGHRISNKRVEVDEDKIKSMV 120
                  HEKHL MVFA LRDN+L+ N+KKCV AHS+I Y GH IS   VE D+DK+KSM+
Sbjct: 755  SSDITEHEKHLGMVFATLRDNQLYANRKKCVFAHSQIHYLGHVISKHGVEADQDKVKSML 814

Query: 121  NWPQPKDITGLRGFLGLTGYYRRFVKGYGEIAAPLTQLLQNNAFSRNEEAIVAFEQLKAA 180
             WP+PKD+TGLRGFLGLTGYYRRFVKGYGEIAAPLT+LLQ NAF  +E A +AFE LK+A
Sbjct: 815  QWPKPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFKWDENATLAFESLKSA 874

Query: 181  MTILSVLALPDWSLPFIIETDASYFGLGAVLSQNGYPIAFFSQKLSLKAQTKSIYERELM 240
            M+ + VLALPDWSLPF+IETDAS  GLGAVLSQN +PIAFFSQKLS +AQ KSIYERELM
Sbjct: 875  MSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELM 934

Query: 241  AVVLAVQKWRHYLMGRKFTIIFYQRALKFLLEQREVQPQFQKWLTKRLGYDFEILYSPGL 284
            AVVL+VQKWRHYL+GR+FTI+  Q+ALKFLLEQREVQPQFQKWLTK LGYDFEILY PGL
Sbjct: 935  AVVLSVQKWRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL 994

[Close]

BLAST of Cmc01g0016871 vs. ExPASy TrEMBL
Match: A0A5D3DWA9 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001670 PE=4 SV=1)

HSP 1 Score: 447.2 bits (1149), Expect = 5.1e-122
Identity = 224/309 (72.49%), Postives = 252/309 (81.55%), Query Frame = 0


Query: 1    MKEKDIEKTAFRTHESHYEFLVIPFGLTNAPATFQSLINQ-------------------- 60
            M+E+DIEKTAFRTHE HYEF+V+PFGLTNAPATFQSL+NQ                    
Sbjct: 695  MREEDIEKTAFRTHEGHYEFVVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVY 754

Query: 61   ------HEKHLEMVFAVLRDNRLFPNKKKCVIAHSKIQYFGHRISNKRVEVDEDKIKSMV 120
                  HEKHL MVFA LRDN+L+ N+KKCV AHS+I Y GH IS   VE D+DK+KSM+
Sbjct: 755  SSDITEHEKHLGMVFATLRDNQLYANRKKCVFAHSQIHYLGHVISKHGVEADQDKVKSML 814

Query: 121  NWPQPKDITGLRGFLGLTGYYRRFVKGYGEIAAPLTQLLQNNAFSRNEEAIVAFEQLKAA 180
             WP+PKD+TGLRGFLGLTGYYRRFVKGYGEIAAPLT+LLQ NAF  +E A +AFE LK+A
Sbjct: 815  QWPKPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFKWDENATLAFESLKSA 874

Query: 181  MTILSVLALPDWSLPFIIETDASYFGLGAVLSQNGYPIAFFSQKLSLKAQTKSIYERELM 240
            M+ + VLALPDWSLPF+IETDAS  GLGAVLSQN +PIAFFSQKLS +AQ KSIYERELM
Sbjct: 875  MSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELM 934

Query: 241  AVVLAVQKWRHYLMGRKFTIIFYQRALKFLLEQREVQPQFQKWLTKRLGYDFEILYSPGL 284
            AVVL+VQKWRHYL+GR+FTI+  Q+ALKFLLEQREVQPQFQKWLTK LGYDFEILY PGL
Sbjct: 935  AVVLSVQKWRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL 994

[Close]

BLAST of Cmc01g0016871 vs. ExPASy TrEMBL
Match: A0A5D3DU86 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold95G00470 PE=4 SV=1)

HSP 1 Score: 447.2 bits (1149), Expect = 5.1e-122
Identity = 224/309 (72.49%), Postives = 252/309 (81.55%), Query Frame = 0


Query: 1    MKEKDIEKTAFRTHESHYEFLVIPFGLTNAPATFQSLINQ-------------------- 60
            M+E+DIEKTAFRTHE HYEF+V+PFGLTNAPATFQSL+NQ                    
Sbjct: 695  MREEDIEKTAFRTHEGHYEFVVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVY 754

Query: 61   ------HEKHLEMVFAVLRDNRLFPNKKKCVIAHSKIQYFGHRISNKRVEVDEDKIKSMV 120
                  HEKHL MVFA LRDN+L+ N+KKCV AHS+I Y GH IS   VE D+DK+KSM+
Sbjct: 755  SSDITEHEKHLGMVFATLRDNQLYANRKKCVFAHSQIHYLGHVISKHGVEADQDKVKSML 814

Query: 121  NWPQPKDITGLRGFLGLTGYYRRFVKGYGEIAAPLTQLLQNNAFSRNEEAIVAFEQLKAA 180
             WP+PKD+TGLRGFLGLTGYYRRFVKGYGEIAAPLT+LLQ NAF  +E A +AFE LK+A
Sbjct: 815  QWPKPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFKWDENATLAFESLKSA 874

Query: 181  MTILSVLALPDWSLPFIIETDASYFGLGAVLSQNGYPIAFFSQKLSLKAQTKSIYERELM 240
            M+ + VLALPDWSLPF+IETDAS  GLGAVLSQN +PIAFFSQKLS +AQ KSIYERELM
Sbjct: 875  MSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELM 934

Query: 241  AVVLAVQKWRHYLMGRKFTIIFYQRALKFLLEQREVQPQFQKWLTKRLGYDFEILYSPGL 284
            AVVL+VQKWRHYL+GR+FTI+  Q+ALKFLLEQREVQPQFQKWLTK LGYDFEILY PGL
Sbjct: 935  AVVLSVQKWRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL 994

[Close]

BLAST of Cmc01g0016871 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 140.2 bits (352), Expect = 2.6e-33
Identity = 68/130 (52.31%), Postives = 88/130 (67.69%), Query Frame = 0


Query: 44  HLEMVFAVLRDNRLFPNKKKCVIAHSKIQYFGHR--ISNKRVEVDEDKIKSMVNWPQPKD 103
           HL MV  +   ++ + N+KKC     +I Y GHR  IS + V  D  K+++MV WP+PK+
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 104 ITGLRGFLGLTGYYRRFVKGYGEIAAPLTQLLQNNAFSRNEEAIVAFEQLKAAMTILSVL 163
            T LRGFLGLTGYYRRFVK YG+I  PLT+LL+ N+    E A +AF+ LK A+T L VL
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLPVL 122

Query: 164 ALPDWSLPFI 172
           ALPD  LPF+
Sbjct: 123 ALPDLKLPFV 132

The following BLAST results are available for this feature:

BLAST of Cmc01g0016871 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8637561.1	1.6e-125	75.08	hypothetical protein CSA_017659 [Cucumis sativus]	[more]
KGN62557.2	1.7e-124	75.08	hypothetical protein Csa_018739 [Cucumis sativus]	[more]
XP_031745419.1	1.2e-122	73.46	uncharacterized protein LOC116405630 [Cucumis sativus]	[more]
KAE8637598.1	1.2e-122	73.46	hypothetical protein CSA_022681 [Cucumis sativus]	[more]
TYK28944.1	1.1e-121	72.49	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc01g0016871 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	2.7e-51	37.30	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	1.7e-45	34.73	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	1.2e-40	32.11	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P10401	6.4e-37	30.96	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
P0CT41	1.0e-34	30.09	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc01g0016871 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E325	5.1e-122	72.49	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3BBH7	5.1e-122	72.49	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DZK6	5.1e-122	72.49	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DWA9	5.1e-122	72.49	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DU86	5.1e-122	72.49	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Cmc01g0016871 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	2.6e-33	52.31	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.370		coord: 167..235 e-value: 2.7E-9 score: 38.9
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 2..29 e-value: 4.2E-11 score: 44.5
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 3..258
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 3..258
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..78 e-value: 2.5127E-27 score: 102.288
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 171..283 e-value: 6.09362E-43 score: 141.091
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 30..39 e-value: 4.2E-11 score: 44.5
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 40..84 e-value: 9.1E-9 score: 37.2
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 87..166 e-value: 6.7E-23 score: 82.5
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 142..234 e-value: 1.5E-29 score: 101.9
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..270

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0016871.1	Cmc01g0016871.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010158	abaxial cell fate specification
biological_process	GO:0015074	DNA integration
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000976	transcription cis-regulatory region binding