Cmc01g0016081 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0016081
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3/gypsy retrotransposon protein
Location	CMiso1.1chr01: 13957394 .. 13958023 (+)
RNA-Seq Expression	Cmc01g0016081
Synteny	Cmc01g0016081

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCAGGTATTTAAGCCTTTCCTCCGACGTTGTGTATTGGTTTTCTTTGATGATATATTGGTTTATAGTTCGGACATAACGGAGCACGAGAAACACTTAGGGATGGTGTTTGCAATACTAAGAGATAACCAATTGTATGTTAATCGCAAGAAATGTGTTTTCGCTCATTCACAAATACACTACTTGGGCCATATTATTTCAAAACAAGGAGTAGAAGCAGACCAAGATAAGGTTAGATGTATGCTCCAATGGCCACAACCTAAAGATGTAACAGGCTTAAGGAGATTTTTAGGGCTGACGGGCTATTATAGACGCTTTGTCAAAAGTTATGGTGAGATTGCAGCACCCTTGACCAAACTACTGCAGAAGAATGCCTTCAAATGGGATGAGAACGCCATCCTTGCATTTGAAAGTCTGAAATCCGCTATGTCTACCATACCCGTACTCGCACTACCCGATTGGTCTTTGCCTTTTATGATAGAAACCGATGCCTCAGGCAGTGGATTGGGAGCAGTACTGTCTCAGAACGGCCATCCCATCGCATTCTTCAGCCAGAAGTTGTCTACAAGGGCCCAATCCAAGTCCATCTACGAGAGAGAATTGATGGTTGTAGTACTATCAGTGTAG

mRNA sequence

ATGAATCAGGTATTTAAGCCTTTCCTCCGACGTTGTGTATTGGTTTTCTTTGATGATATATTGGTTTATAGTTCGGACATAACGGAGCACGAGAAACACTTAGGGATGGTGTTTGCAATACTAAGAGATAACCAATTGTATGTTAATCGCAAGAAATGTGTTTTCGCTCATTCACAAATACACTACTTGGGCCATATTATTTCAAAACAAGGAGTAGAAGCAGACCAAGATAAGGTTAGATGTATGCTCCAATGGCCACAACCTAAAGATGTAACAGGCTTAAGGAGATTTTTAGGGCTGACGGGCTATTATAGACGCTTTGTCAAAAGTTATGGTGAGATTGCAGCACCCTTGACCAAACTACTGCAGAAGAATGCCTTCAAATGGGATGAGAACGCCATCCTTGCATTTGAAAGTCTGAAATCCGCTATGTCTACCATACCCGTACTCGCACTACCCGATTGGTCTTTGCCTTTTATGATAGAAACCGATGCCTCAGGCAGTGGATTGGGAGCAGTACTGTCTCAGAACGGCCATCCCATCGCATTCTTCAGCCAGAAGTTGTCTACAAGGGCCCAATCCAAGTCCATCTACGAGAGAGAATTGATGGTTGTAGTACTATCAGTGTAG

Coding sequence (CDS)

ATGAATCAGGTATTTAAGCCTTTCCTCCGACGTTGTGTATTGGTTTTCTTTGATGATATATTGGTTTATAGTTCGGACATAACGGAGCACGAGAAACACTTAGGGATGGTGTTTGCAATACTAAGAGATAACCAATTGTATGTTAATCGCAAGAAATGTGTTTTCGCTCATTCACAAATACACTACTTGGGCCATATTATTTCAAAACAAGGAGTAGAAGCAGACCAAGATAAGGTTAGATGTATGCTCCAATGGCCACAACCTAAAGATGTAACAGGCTTAAGGAGATTTTTAGGGCTGACGGGCTATTATAGACGCTTTGTCAAAAGTTATGGTGAGATTGCAGCACCCTTGACCAAACTACTGCAGAAGAATGCCTTCAAATGGGATGAGAACGCCATCCTTGCATTTGAAAGTCTGAAATCCGCTATGTCTACCATACCCGTACTCGCACTACCCGATTGGTCTTTGCCTTTTATGATAGAAACCGATGCCTCAGGCAGTGGATTGGGAGCAGTACTGTCTCAGAACGGCCATCCCATCGCATTCTTCAGCCAGAAGTTGTCTACAAGGGCCCAATCCAAGTCCATCTACGAGAGAGAATTGATGGTTGTAGTACTATCAGTGTAG

Protein sequence

MNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAILRDNQLYVNRKKCVFAHSQIHYLGHIISKQGVEADQDKVRCMLQWPQPKDVTGLRRFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENAILAFESLKSAMSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSTRAQSKSIYERELMVVVLSV

Homology

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BLAST of Cmc01g0016081 vs. NCBI nr
Match: TYK23221.1 (Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 412.5 bits (1059), Expect = 2.1e-111
Identity = 203/205 (99.02%), Postives = 204/205 (99.51%), Query Frame = 0


Query: 1   MNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAILRDNQLYVNRKKCVFAHSQI 60
           MNQVFKPFLRRCVLVFFDDILVYSSDITE+EKHLGMVFAILRDNQLYVNRKKCVFAHSQI
Sbjct: 38  MNQVFKPFLRRCVLVFFDDILVYSSDITEYEKHLGMVFAILRDNQLYVNRKKCVFAHSQI 97

Query: 61  HYLGHIISKQGVEADQDKVRCMLQWPQPKDVTGLRRFLGLTGYYRRFVKSYGEIAAPLTK 120
           HYLGHIISKQGVEADQDKVRCMLQWPQPKDVTGLRRFLGLTGYYRRFVKSYGEIAAPLTK
Sbjct: 98  HYLGHIISKQGVEADQDKVRCMLQWPQPKDVTGLRRFLGLTGYYRRFVKSYGEIAAPLTK 157

Query: 121 LLQKNAFKWDENAILAFESLKSAMSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHP 180
           LLQKNAFKWDENAILAFESLKSAMSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHP
Sbjct: 158 LLQKNAFKWDENAILAFESLKSAMSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHP 217

Query: 181 IAFFSQKLSTRAQSKSIYERELMVV 206
           I FFSQKLSTRAQSKSIYERELMVV
Sbjct: 218 ITFFSQKLSTRAQSKSIYERELMVV 242

[Close]

BLAST of Cmc01g0016081 vs. NCBI nr
Match: KAA0046359.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 403.3 bits (1035), Expect = 1.3e-108
Identity = 198/209 (94.74%), Postives = 202/209 (96.65%), Query Frame = 0


Query: 1   MNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAILRDNQLYVNRKKCVFAHSQI 60
           MNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFA LRDNQLY NRKKCVFAHSQI
Sbjct: 732 MNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFATLRDNQLYANRKKCVFAHSQI 791

Query: 61  HYLGHIISKQGVEADQDKVRCMLQWPQPKDVTGLRRFLGLTGYYRRFVKSYGEIAAPLTK 120
           HYLGH+ISK GVEADQDKV+CMLQWP+PKDVTGLR FLGLTGYYRRFVKSYGEIAAPLTK
Sbjct: 792 HYLGHVISKYGVEADQDKVKCMLQWPKPKDVTGLRGFLGLTGYYRRFVKSYGEIAAPLTK 851

Query: 121 LLQKNAFKWDENAILAFESLKSAMSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHP 180
           LLQKNAFKWDENA LAFESLKSAMSTIPVLALPDWSLPFMIETDASGSGLGAVLSQN HP
Sbjct: 852 LLQKNAFKWDENATLAFESLKSAMSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNSHP 911

Query: 181 IAFFSQKLSTRAQSKSIYERELMVVVLSV 210
           IAFFSQKLSTRAQ+KSIYERELM VVLSV
Sbjct: 912 IAFFSQKLSTRAQAKSIYERELMAVVLSV 940

[Close]

BLAST of Cmc01g0016081 vs. NCBI nr
Match: KAA0063362.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 401.4 bits (1030), Expect = 4.9e-108
Identity = 196/209 (93.78%), Postives = 201/209 (96.17%), Query Frame = 0


Query: 1   MNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAILRDNQLYVNRKKCVFAHSQI 60
           MNQVFKPFLRRCVLVFFDDILVYSSDITEHE+HLGMVFAILRDNQLY NRKKCVFAHSQI
Sbjct: 187 MNQVFKPFLRRCVLVFFDDILVYSSDITEHERHLGMVFAILRDNQLYANRKKCVFAHSQI 246

Query: 61  HYLGHIISKQGVEADQDKVRCMLQWPQPKDVTGLRRFLGLTGYYRRFVKSYGEIAAPLTK 120
           HYLGHIISKQGVE DQDKVRCMLQWPQPKD+TGLR FLG TGYYRRFVKSYGEIAAPLTK
Sbjct: 247 HYLGHIISKQGVETDQDKVRCMLQWPQPKDITGLRGFLGPTGYYRRFVKSYGEIAAPLTK 306

Query: 121 LLQKNAFKWDENAILAFESLKSAMSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHP 180
           LL KNAFKWDENA LAFESLKSAM+TIPVLALPDWSLPFMIETDASGSGLGA+LSQNGHP
Sbjct: 307 LLHKNAFKWDENATLAFESLKSAMTTIPVLALPDWSLPFMIETDASGSGLGAILSQNGHP 366

Query: 181 IAFFSQKLSTRAQSKSIYERELMVVVLSV 210
           IAFFSQKLS RAQSKSIYERELM VVLS+
Sbjct: 367 IAFFSQKLSPRAQSKSIYERELMAVVLSM 395

[Close]

BLAST of Cmc01g0016081 vs. NCBI nr
Match: TYK28064.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 399.8 bits (1026), Expect = 1.4e-107
Identity = 195/209 (93.30%), Postives = 200/209 (95.69%), Query Frame = 0


Query: 1   MNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAILRDNQLYVNRKKCVFAHSQI 60
           MNQVFKPFLRRCVLVFFDDILVYSSDITEHE+HLGMVFAILRDNQLY NRKKCVFAHSQI
Sbjct: 187 MNQVFKPFLRRCVLVFFDDILVYSSDITEHERHLGMVFAILRDNQLYANRKKCVFAHSQI 246

Query: 61  HYLGHIISKQGVEADQDKVRCMLQWPQPKDVTGLRRFLGLTGYYRRFVKSYGEIAAPLTK 120
           HYLGHIISKQGVE DQDKVRCMLQWPQPKD+TGLR FLG TGYYRRFVKSYGEIAAPLTK
Sbjct: 247 HYLGHIISKQGVETDQDKVRCMLQWPQPKDITGLRGFLGPTGYYRRFVKSYGEIAAPLTK 306

Query: 121 LLQKNAFKWDENAILAFESLKSAMSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHP 180
           LL KNAFKWDENA LAFESLKSAM+TIPVL LPDWSLPFMIETDASGSGLGA+LSQNGHP
Sbjct: 307 LLHKNAFKWDENATLAFESLKSAMTTIPVLVLPDWSLPFMIETDASGSGLGAILSQNGHP 366

Query: 181 IAFFSQKLSTRAQSKSIYERELMVVVLSV 210
           IAFFSQKLS RAQSKSIYERELM VVLS+
Sbjct: 367 IAFFSQKLSPRAQSKSIYERELMAVVLSM 395

[Close]

BLAST of Cmc01g0016081 vs. NCBI nr
Match: KAA0066816.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 399.4 bits (1025), Expect = 1.9e-107
Identity = 196/209 (93.78%), Postives = 201/209 (96.17%), Query Frame = 0


Query: 1    MNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAILRDNQLYVNRKKCVFAHSQI 60
            MNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFA LRDNQLY NRKKCV AHSQI
Sbjct: 804  MNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFATLRDNQLYANRKKCVSAHSQI 863

Query: 61   HYLGHIISKQGVEADQDKVRCMLQWPQPKDVTGLRRFLGLTGYYRRFVKSYGEIAAPLTK 120
            HYLGH+ISK GVEADQDKV+CMLQWP+PKDVTGLR FLGLTGYYRRFVKSYGEIAAPLTK
Sbjct: 864  HYLGHVISKHGVEADQDKVKCMLQWPKPKDVTGLRGFLGLTGYYRRFVKSYGEIAAPLTK 923

Query: 121  LLQKNAFKWDENAILAFESLKSAMSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHP 180
            LLQKNAFKWDENA LAFESLKSAMSTIPVLALPDWSLPF+IETDASGSGLGAVLSQN HP
Sbjct: 924  LLQKNAFKWDENATLAFESLKSAMSTIPVLALPDWSLPFLIETDASGSGLGAVLSQNSHP 983

Query: 181  IAFFSQKLSTRAQSKSIYERELMVVVLSV 210
            IAFFSQKLSTRAQ+KSIYERELM VVLSV
Sbjct: 984  IAFFSQKLSTRAQAKSIYERELMAVVLSV 1012

[Close]

BLAST of Cmc01g0016081 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.4e-41
Identity = 86/209 (41.15%), Postives = 130/209 (62.20%), Query Frame = 0


Query: 1   MNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAILRDNQLYVNRKKCVFAHSQI 60
           MN + +P L +  LV+ DDI+++S+ +TEH   + +VF  L D  L +   KC F   + 
Sbjct: 348 MNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEA 407

Query: 61  HYLGHIISKQGVEADQDKVRCMLQWPQPKDVTGLRRFLGLTGYYRRFVKSYGEIAAPLTK 120
           ++LGHI++  G++ +  KV+ ++ +P P     +R FLGLTGYYR+F+ +Y +IA P+T 
Sbjct: 408 NFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTS 467

Query: 121 LLQKNAFKWDENA---ILAFESLKSAMSTIPVLALPDWSLPFMIETDASGSGLGAVLSQN 180
            L+K   K D      I AFE LK+ +   P+L LPD+   F++ TDAS   LGAVLSQN
Sbjct: 468 CLKKRT-KIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQN 527

Query: 181 GHPIAFFSQKLSTRAQSKSIYERELMVVV 207
           GHPI+F S+ L+    + S  E+EL+ +V
Sbjct: 528 GHPISFISRTLNDHELNYSAIEKELLAIV 555

[Close]

BLAST of Cmc01g0016081 vs. ExPASy Swiss-Prot
Match: P92523 (Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 GN=AtMg00860 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 4.5e-40
Identity = 80/130 (61.54%), Postives = 97/130 (74.62%), Query Frame = 0


Query: 33  HLGMVFAILRDNQLYVNRKKCVFAHSQIHYLG--HIISKQGVEADQDKVRCMLQWPQPKD 92
           HLGMV  I   +Q Y NRKKC F   QI YLG  HIIS +GV AD  K+  M+ WP+PK+
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 93  VTGLRRFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENAILAFESLKSAMSTIPVL 152
            T LR FLGLTGYYRRFVK+YG+I  PLT+LL+KN+ KW E A LAF++LK A++T+PVL
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLPVL 122

Query: 153 ALPDWSLPFM 161
           ALPD  LPF+
Sbjct: 123 ALPDLKLPFV 132

[Close]

BLAST of Cmc01g0016081 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.5e-38
Identity = 79/208 (37.98%), Postives = 129/208 (62.02%), Query Frame = 0


Query: 1   MNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAILRDNQLYVNRKKCVFAHSQI 60
           MN + +P L +  LV+ DDI+V+S+ + EH + LG+VF  L    L +   KC F   + 
Sbjct: 349 MNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQET 408

Query: 61  HYLGHIISKQGVEADQDKVRCMLQWPQPKDVTGLRRFLGLTGYYRRFVKSYGEIAAPLTK 120
            +LGH+++  G++ + +K+  + ++P P     ++ FLGLTGYYR+F+ ++ +IA P+TK
Sbjct: 409 TFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTK 468

Query: 121 LLQKNAFKWDENAIL--AFESLKSAMSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNG 180
            L+KN      N     AF+ LK  +S  P+L +PD++  F + TDAS   LGAVLSQ+G
Sbjct: 469 CLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQDG 528

Query: 181 HPIAFFSQKLSTRAQSKSIYERELMVVV 207
           HP+++ S+ L+    + S  E+EL+ +V
Sbjct: 529 HPLSYISRTLNEHEINYSTIEKELLAIV 556

[Close]

BLAST of Cmc01g0016081 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 5.7e-35
Identity = 78/225 (34.67%), Postives = 130/225 (57.78%), Query Frame = 0


Query: 1   MNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAILRDNQLYVNRKKCVFAHSQI 60
           ++ + +  + +   V+ DDI+V+S D   H K+L +V A L    L VN +K  F  +Q+
Sbjct: 265 IDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQV 324

Query: 61  HYLGHIISKQGVEADQDKVRCMLQWPQPKDVTGLRRFLGLTGYYRRFVKSYGEIAAPLTK 120
            +LG+I++  G++AD  KVR + + P P  V  L+RFLG+T YYR+F++ Y ++A PLT 
Sbjct: 325 EFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTN 384

Query: 121 LLQ------------KNAFKWDENAILAFESLKSAMSTIPVLALPDWSLPFMIETDASGS 180
           L +            K     DE A+ +F  LKS + +  +LA P ++ PF + TDAS  
Sbjct: 385 LTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASNW 444

Query: 181 GLGAVLSQN----GHPIAFFSQKLSTRAQSKSIYERELMVVVLSV 210
            +GAVLSQ+      PIA+ S+ L+   ++ +  E+E++ ++ S+
Sbjct: 445 AIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSL 489

[Close]

BLAST of Cmc01g0016081 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.4e-33
Identity = 75/219 (34.25%), Postives = 127/219 (57.99%), Query Frame = 0


Query: 1   MNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAILRDNQLYVNRKKCVFAHSQI 60
           ++ V +  + +   V+ DD++++S + ++H +H+  V   L D  + V+++K  F    +
Sbjct: 324 LDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVSQEKTRFFKESV 383

Query: 61  HYLGHIISKQGVEADQDKVRCMLQWPQPKDVTGLRRFLGLTGYYRRFVKSYGEIAAPLTK 120
            YLG I+SK G ++D +KV+ + ++P+P  V  +R FLGL  YYR F+K +  IA P+T 
Sbjct: 384 EYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITD 443

Query: 121 LL------------QKNAFKWDENAILAFESLKSAMSTIPV-LALPDWSLPFMIETDASG 180
           +L            +K   +++E    AF+ L++ +++  V L  PD+  PF + TDAS 
Sbjct: 444 ILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKPFDLTTDASA 503

Query: 181 SGLGAVLSQNGHPIAFFSQKLSTRAQSKSIYERELMVVV 207
           SG+GAVLSQ G PI   S+ L    Q+ +  EREL+ +V
Sbjct: 504 SGIGAVLSQEGRPITMISRTLKQPEQNYATNERELLAIV 542

[Close]

BLAST of Cmc01g0016081 vs. ExPASy TrEMBL
Match: A0A5D3DHT1 (Transposon Tf2-6 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G002530 PE=4 SV=1)

HSP 1 Score: 412.5 bits (1059), Expect = 1.0e-111
Identity = 203/205 (99.02%), Postives = 204/205 (99.51%), Query Frame = 0


Query: 1   MNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAILRDNQLYVNRKKCVFAHSQI 60
           MNQVFKPFLRRCVLVFFDDILVYSSDITE+EKHLGMVFAILRDNQLYVNRKKCVFAHSQI
Sbjct: 38  MNQVFKPFLRRCVLVFFDDILVYSSDITEYEKHLGMVFAILRDNQLYVNRKKCVFAHSQI 97

Query: 61  HYLGHIISKQGVEADQDKVRCMLQWPQPKDVTGLRRFLGLTGYYRRFVKSYGEIAAPLTK 120
           HYLGHIISKQGVEADQDKVRCMLQWPQPKDVTGLRRFLGLTGYYRRFVKSYGEIAAPLTK
Sbjct: 98  HYLGHIISKQGVEADQDKVRCMLQWPQPKDVTGLRRFLGLTGYYRRFVKSYGEIAAPLTK 157

Query: 121 LLQKNAFKWDENAILAFESLKSAMSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHP 180
           LLQKNAFKWDENAILAFESLKSAMSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHP
Sbjct: 158 LLQKNAFKWDENAILAFESLKSAMSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHP 217

Query: 181 IAFFSQKLSTRAQSKSIYERELMVV 206
           I FFSQKLSTRAQSKSIYERELMVV
Sbjct: 218 ITFFSQKLSTRAQSKSIYERELMVV 242

[Close]

BLAST of Cmc01g0016081 vs. ExPASy TrEMBL
Match: A0A5A7TYN3 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G00710 PE=4 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 6.2e-109
Identity = 198/209 (94.74%), Postives = 202/209 (96.65%), Query Frame = 0


Query: 1   MNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAILRDNQLYVNRKKCVFAHSQI 60
           MNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFA LRDNQLY NRKKCVFAHSQI
Sbjct: 732 MNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFATLRDNQLYANRKKCVFAHSQI 791

Query: 61  HYLGHIISKQGVEADQDKVRCMLQWPQPKDVTGLRRFLGLTGYYRRFVKSYGEIAAPLTK 120
           HYLGH+ISK GVEADQDKV+CMLQWP+PKDVTGLR FLGLTGYYRRFVKSYGEIAAPLTK
Sbjct: 792 HYLGHVISKYGVEADQDKVKCMLQWPKPKDVTGLRGFLGLTGYYRRFVKSYGEIAAPLTK 851

Query: 121 LLQKNAFKWDENAILAFESLKSAMSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHP 180
           LLQKNAFKWDENA LAFESLKSAMSTIPVLALPDWSLPFMIETDASGSGLGAVLSQN HP
Sbjct: 852 LLQKNAFKWDENATLAFESLKSAMSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNSHP 911

Query: 181 IAFFSQKLSTRAQSKSIYERELMVVVLSV 210
           IAFFSQKLSTRAQ+KSIYERELM VVLSV
Sbjct: 912 IAFFSQKLSTRAQAKSIYERELMAVVLSV 940

[Close]

BLAST of Cmc01g0016081 vs. ExPASy TrEMBL
Match: A0A5A7V529 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1505G00350 PE=4 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 2.4e-108
Identity = 196/209 (93.78%), Postives = 201/209 (96.17%), Query Frame = 0


Query: 1   MNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAILRDNQLYVNRKKCVFAHSQI 60
           MNQVFKPFLRRCVLVFFDDILVYSSDITEHE+HLGMVFAILRDNQLY NRKKCVFAHSQI
Sbjct: 187 MNQVFKPFLRRCVLVFFDDILVYSSDITEHERHLGMVFAILRDNQLYANRKKCVFAHSQI 246

Query: 61  HYLGHIISKQGVEADQDKVRCMLQWPQPKDVTGLRRFLGLTGYYRRFVKSYGEIAAPLTK 120
           HYLGHIISKQGVE DQDKVRCMLQWPQPKD+TGLR FLG TGYYRRFVKSYGEIAAPLTK
Sbjct: 247 HYLGHIISKQGVETDQDKVRCMLQWPQPKDITGLRGFLGPTGYYRRFVKSYGEIAAPLTK 306

Query: 121 LLQKNAFKWDENAILAFESLKSAMSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHP 180
           LL KNAFKWDENA LAFESLKSAM+TIPVLALPDWSLPFMIETDASGSGLGA+LSQNGHP
Sbjct: 307 LLHKNAFKWDENATLAFESLKSAMTTIPVLALPDWSLPFMIETDASGSGLGAILSQNGHP 366

Query: 181 IAFFSQKLSTRAQSKSIYERELMVVVLSV 210
           IAFFSQKLS RAQSKSIYERELM VVLS+
Sbjct: 367 IAFFSQKLSPRAQSKSIYERELMAVVLSM 395

[Close]

BLAST of Cmc01g0016081 vs. ExPASy TrEMBL
Match: A0A5D3DX13 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003250 PE=4 SV=1)

HSP 1 Score: 399.8 bits (1026), Expect = 6.9e-108
Identity = 195/209 (93.30%), Postives = 200/209 (95.69%), Query Frame = 0


Query: 1   MNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAILRDNQLYVNRKKCVFAHSQI 60
           MNQVFKPFLRRCVLVFFDDILVYSSDITEHE+HLGMVFAILRDNQLY NRKKCVFAHSQI
Sbjct: 187 MNQVFKPFLRRCVLVFFDDILVYSSDITEHERHLGMVFAILRDNQLYANRKKCVFAHSQI 246

Query: 61  HYLGHIISKQGVEADQDKVRCMLQWPQPKDVTGLRRFLGLTGYYRRFVKSYGEIAAPLTK 120
           HYLGHIISKQGVE DQDKVRCMLQWPQPKD+TGLR FLG TGYYRRFVKSYGEIAAPLTK
Sbjct: 247 HYLGHIISKQGVETDQDKVRCMLQWPQPKDITGLRGFLGPTGYYRRFVKSYGEIAAPLTK 306

Query: 121 LLQKNAFKWDENAILAFESLKSAMSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHP 180
           LL KNAFKWDENA LAFESLKSAM+TIPVL LPDWSLPFMIETDASGSGLGA+LSQNGHP
Sbjct: 307 LLHKNAFKWDENATLAFESLKSAMTTIPVLVLPDWSLPFMIETDASGSGLGAILSQNGHP 366

Query: 181 IAFFSQKLSTRAQSKSIYERELMVVVLSV 210
           IAFFSQKLS RAQSKSIYERELM VVLS+
Sbjct: 367 IAFFSQKLSPRAQSKSIYERELMAVVLSM 395

[Close]

BLAST of Cmc01g0016081 vs. ExPASy TrEMBL
Match: A0A5A7VK94 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G001740 PE=4 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 9.0e-108
Identity = 196/209 (93.78%), Postives = 201/209 (96.17%), Query Frame = 0


Query: 1    MNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAILRDNQLYVNRKKCVFAHSQI 60
            MNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFA LRDNQLY NRKKCV AHSQI
Sbjct: 804  MNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFATLRDNQLYANRKKCVSAHSQI 863

Query: 61   HYLGHIISKQGVEADQDKVRCMLQWPQPKDVTGLRRFLGLTGYYRRFVKSYGEIAAPLTK 120
            HYLGH+ISK GVEADQDKV+CMLQWP+PKDVTGLR FLGLTGYYRRFVKSYGEIAAPLTK
Sbjct: 864  HYLGHVISKHGVEADQDKVKCMLQWPKPKDVTGLRGFLGLTGYYRRFVKSYGEIAAPLTK 923

Query: 121  LLQKNAFKWDENAILAFESLKSAMSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHP 180
            LLQKNAFKWDENA LAFESLKSAMSTIPVLALPDWSLPF+IETDASGSGLGAVLSQN HP
Sbjct: 924  LLQKNAFKWDENATLAFESLKSAMSTIPVLALPDWSLPFLIETDASGSGLGAVLSQNSHP 983

Query: 181  IAFFSQKLSTRAQSKSIYERELMVVVLSV 210
            IAFFSQKLSTRAQ+KSIYERELM VVLSV
Sbjct: 984  IAFFSQKLSTRAQAKSIYERELMAVVLSV 1012

[Close]

BLAST of Cmc01g0016081 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 166.0 bits (419), Expect = 3.2e-41
Identity = 80/130 (61.54%), Postives = 97/130 (74.62%), Query Frame = 0


Query: 33  HLGMVFAILRDNQLYVNRKKCVFAHSQIHYLG--HIISKQGVEADQDKVRCMLQWPQPKD 92
           HLGMV  I   +Q Y NRKKC F   QI YLG  HIIS +GV AD  K+  M+ WP+PK+
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 93  VTGLRRFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENAILAFESLKSAMSTIPVL 152
            T LR FLGLTGYYRRFVK+YG+I  PLT+LL+KN+ KW E A LAF++LK A++T+PVL
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLPVL 122

Query: 153 ALPDWSLPFM 161
           ALPD  LPF+
Sbjct: 123 ALPDLKLPFV 132

The following BLAST results are available for this feature:

BLAST of Cmc01g0016081 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK23221.1	2.1e-111	99.02	Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa]	[more]
KAA0046359.1	1.3e-108	94.74	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0063362.1	4.9e-108	93.78	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK28064.1	1.4e-107	93.30	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0066816.1	1.9e-107	93.78	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc01g0016081 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	1.4e-41	41.15	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P92523	4.5e-40	61.54	Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 ...	[more]
P04323	1.5e-38	37.98	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	5.7e-35	34.67	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P10401	5.4e-33	34.25	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]

BLAST of Cmc01g0016081 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DHT1	1.0e-111	99.02	Transposon Tf2-6 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7TYN3	6.2e-109	94.74	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7V529	2.4e-108	93.78	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3DX13	6.9e-108	93.30	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7VK94	9.0e-108	93.78	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Cmc01g0016081 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	3.2e-41	61.54	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 1..67 e-value: 4.9E-12 score: 45.8
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..67 score: 10.823022
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 129..208 e-value: 1.4E-22 score: 79.6
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..72 e-value: 2.8E-25 score: 90.7
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 76..161 e-value: 5.4E-27 score: 95.6
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 12..208
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 12..208
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..67 e-value: 1.06542E-26 score: 98.8217
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..207

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0016081.1	Cmc01g0016081.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding