Cmc01g0015951 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0015951
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr01: 13841544 .. 13842197 (-)
RNA-Seq Expression	Cmc01g0015951
Synteny	Cmc01g0015951

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGGAAGCTTGATGTACTTAACAACTACAAAGCCTGATATTATGTATGCAGTAAGTTTAATTAGCAGGTTCATGGAATCTCCTACTAAGTTTCATCTCCTTGCTTCCAAAAGAATCTTACGTTACATAAAAGGGACTCCTGATCTTGGCATACTTTATCAAAGAAAAAGAAAATTAAACTTCGTTGGTTTTAGTGATAGTGATTATGCAGGAGATTTAAATGATAGAAAGAGTACTTCAGGGTATGTTTTCATGCTTGGTTCAGGAGTTATCTCATGGTCTTCCAAAAAGCAGCCAATTGTCACCACTGAAGCTGAACTTGTAGCAGCAGCATCACGTGCATGTCAAGCCATTTGGTTGAGGAACATTCTTGAGAACTTGCATTATAAGCAAGAAGAAGCATCTATCATTATTTGTGATAATACATCAACAATCAAGCTCTCAAGGAATCCTGTCTTGCATGGACGAAGAAAACACATTAGTGTAAGATACCATTACTTGAGGCATCTTATAAATGATGGAATTAAAAACCTAAGCTATTGTAAAAGTGAAGATCAAGTGGCAGATATTTTAACCAAGCCTCTCAAATTAGCAACATTCGTAAAGCTTTTAAGCTTACTTGGAGCGGTTTCCTTTACTTCTTTAAACTAA

mRNA sequence

ATGGTTGGAAGCTTGATGTACTTAACAACTACAAAGCCTGATATTATGTATGCAGTAAGTTTAATTAGCAGGTTCATGGAATCTCCTACTAAGTTTCATCTCCTTGCTTCCAAAAGAATCTTACGTTACATAAAAGGGACTCCTGATCTTGGCATACTTTATCAAAGAAAAAGAAAATTAAACTTCGTTGGTTTTAGTGATAGTGATTATGCAGGAGATTTAAATGATAGAAAGAGTACTTCAGGGTATGTTTTCATGCTTGGTTCAGGAGTTATCTCATGGTCTTCCAAAAAGCAGCCAATTGTCACCACTGAAGCTGAACTTGTAGCAGCAGCATCACGTGCATGTCAAGCCATTTGGTTGAGGAACATTCTTGAGAACTTGCATTATAAGCAAGAAGAAGCATCTATCATTATTTGTGATAATACATCAACAATCAAGCTCTCAAGGAATCCTGTCTTGCATGGACGAAGAAAACACATTAGTGTAAGATACCATTACTTGAGGCATCTTATAAATGATGGAATTAAAAACCTAAGCTATTGTAAAAGTGAAGATCAAGTGGCAGATATTTTAACCAAGCCTCTCAAATTAGCAACATTCGTAAAGCTTTTAAGCTTACTTGGAGCGGTTTCCTTTACTTCTTTAAACTAA

Coding sequence (CDS)

ATGGTTGGAAGCTTGATGTACTTAACAACTACAAAGCCTGATATTATGTATGCAGTAAGTTTAATTAGCAGGTTCATGGAATCTCCTACTAAGTTTCATCTCCTTGCTTCCAAAAGAATCTTACGTTACATAAAAGGGACTCCTGATCTTGGCATACTTTATCAAAGAAAAAGAAAATTAAACTTCGTTGGTTTTAGTGATAGTGATTATGCAGGAGATTTAAATGATAGAAAGAGTACTTCAGGGTATGTTTTCATGCTTGGTTCAGGAGTTATCTCATGGTCTTCCAAAAAGCAGCCAATTGTCACCACTGAAGCTGAACTTGTAGCAGCAGCATCACGTGCATGTCAAGCCATTTGGTTGAGGAACATTCTTGAGAACTTGCATTATAAGCAAGAAGAAGCATCTATCATTATTTGTGATAATACATCAACAATCAAGCTCTCAAGGAATCCTGTCTTGCATGGACGAAGAAAACACATTAGTGTAAGATACCATTACTTGAGGCATCTTATAAATGATGGAATTAAAAACCTAAGCTATTGTAAAAGTGAAGATCAAGTGGCAGATATTTTAACCAAGCCTCTCAAATTAGCAACATTCGTAAAGCTTTTAAGCTTACTTGGAGCGGTTTCCTTTACTTCTTTAAACTAA

Protein sequence

MVGSLMYLTTTKPDIMYAVSLISRFMESPTKFHLLASKRILRYIKGTPDLGILYQRKRKLNFVGFSDSDYAGDLNDRKSTSGYVFMLGSGVISWSSKKQPIVTTEAELVAAASRACQAIWLRNILENLHYKQEEASIIICDNTSTIKLSRNPVLHGRRKHISVRYHYLRHLINDGIKNLSYCKSEDQVADILTKPLKLATFVKLLSLLGAVSFTSLN

Homology

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BLAST of Cmc01g0015951 vs. NCBI nr
Match: TYK23210.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 414.8 bits (1065), Expect = 4.4e-112
Identity = 213/217 (98.16%), Postives = 214/217 (98.62%), Query Frame = 0


Query: 1   MVGSLMYLTTTKPDIMYAVSLISRFMESPTKFHLLASKRILRYIKGTPDLGILYQRKRKL 60
           MVGSLMYLTTTKPDIMYAVSLISRFMESPT+FHLLASKRILRYIKGTPDLGILYQRKRKL
Sbjct: 338 MVGSLMYLTTTKPDIMYAVSLISRFMESPTEFHLLASKRILRYIKGTPDLGILYQRKRKL 397

Query: 61  NFVGFSDSDYAGDLNDRKSTSGYVFMLGSGVISWSSKKQPIVTTEAELVAAASRACQAIW 120
           NFVGFSDSDYAGDLNDRKSTSGYVFML SGVISWSSKKQPIVTTEAELVAAASRACQAIW
Sbjct: 398 NFVGFSDSDYAGDLNDRKSTSGYVFMLDSGVISWSSKKQPIVTTEAELVAAASRACQAIW 457

Query: 121 LRNILENLHYKQEEASIIICDNTSTIKLSRNPVLHGRRKHISVRYHYLRHLINDGIKNLS 180
           LRNILENLHYKQEEASIIICDNTSTIKLSRNPVLHGR KHISVRYHYLRHLINDGI NLS
Sbjct: 458 LRNILENLHYKQEEASIIICDNTSTIKLSRNPVLHGRSKHISVRYHYLRHLINDGIINLS 517

Query: 181 YCKSEDQVADILTKPLKLATFVKLLSLLGAVSFTSLN 218
           YCKSEDQVADILTKPLKLATFVKLLSLLGAVSFTSLN
Sbjct: 518 YCKSEDQVADILTKPLKLATFVKLLSLLGAVSFTSLN 554

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BLAST of Cmc01g0015951 vs. NCBI nr
Match: KAA0054574.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK27538.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 359.8 bits (922), Expect = 1.7e-95
Identity = 188/220 (85.45%), Postives = 196/220 (89.09%), Query Frame = 0


Query: 1   MVGSLMYLTTTKPDIMYAVSLISRFMESPTKFHLLASKRILRYIKGTPDLGILYQRKRKL 60
           MVGSLMYLT T+PDIMYAVS ISRFM SP KFHLLA+KRILRYIKGTPDLG+LYQR+RKL
Sbjct: 124 MVGSLMYLTATRPDIMYAVSSISRFMNSPIKFHLLAAKRILRYIKGTPDLGMLYQRRRKL 183

Query: 61  NFVGFSDSDYAGDLNDRKSTSGYVFMLGSGVISWSSKKQPIV---TTEAELVAAASRACQ 120
           N VGFSDSDYAGDLNDRKS SGYVFMLGSGVISWSSKKQPIV   TTEAELV A S ACQ
Sbjct: 184 NLVGFSDSDYAGDLNDRKSISGYVFMLGSGVISWSSKKQPIVTLSTTEAELVVATSCACQ 243

Query: 121 AIWLRNILENLHYKQEEASIIICDNTSTIKLSRNPVLHGRRKHISVRYHYLRHLINDGIK 180
           AIWLRNILENL+YKQEEASII  DNTSTIKLSRN VLH R KHI +RYHYLR  INDGI 
Sbjct: 244 AIWLRNILENLNYKQEEASIIHYDNTSTIKLSRNRVLHERSKHIDIRYHYLRDFINDGII 303

Query: 181 NLSYCKSEDQVADILTKPLKLATFVKLLSLLGAVSFTSLN 218
           NLSYCKSEDQV DILTKPLKLATF+KL SLLG +SFTSLN
Sbjct: 304 NLSYCKSEDQVTDILTKPLKLATFLKLRSLLGVISFTSLN 343

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BLAST of Cmc01g0015951 vs. NCBI nr
Match: XP_038904442.1 (secreted RxLR effector protein 161-like [Benincasa hispida])

HSP 1 Score: 338.2 bits (866), Expect = 5.3e-89
Identity = 178/220 (80.91%), Postives = 188/220 (85.45%), Query Frame = 0


Query: 1   MVGSLMYLTTTKPDIMYAVSLISRFMESPTKFHLLASKRILRYIKGTPDLGILYQRKRKL 60
           MVGSLMYL T +P+IMY VSL SRFMESP + HLLA+KRILRY+KGTP LGILYQ+  KL
Sbjct: 34  MVGSLMYLITARPNIMYVVSLFSRFMESPIELHLLAAKRILRYLKGTPSLGILYQKGEKL 93

Query: 61  NFVGFSDSDYAGDLNDRKSTSGYVFMLGSGVISWSSKKQPIV---TTEAELVAAASRACQ 120
           N +GFSDS+Y  DLNDRKST GYVFMLGSG ISWSSKKQPI    TTEAELVAA S ACQ
Sbjct: 94  NLIGFSDSEYTRDLNDRKSTLGYVFMLGSGAISWSSKKQPIATLSTTEAELVAATSCACQ 153

Query: 121 AIWLRNILENLHYKQEEASIIICDNTSTIKLSRNPVLHGRRKHISVRYHYLRHLINDGIK 180
           AI LRNILENLHYKQEEASII CDNTSTIKLSRNPVLHGR K+I VRYHYLR L N GI 
Sbjct: 154 AICLRNILENLHYKQEEASIIHCDNTSTIKLSRNPVLHGRSKYIDVRYHYLRDLTNGGII 213

Query: 181 NLSYCKSEDQVADILTKPLKLATFVKLLSLLGAVSFTSLN 218
           NLSYCKSEDQVADILTKPLKLAT VKL SLLG VS T+LN
Sbjct: 214 NLSYCKSEDQVADILTKPLKLATIVKLRSLLGVVSSTTLN 253

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BLAST of Cmc01g0015951 vs. NCBI nr
Match: XP_021819722.1 (uncharacterized protein LOC110761517 [Prunus avium])

HSP 1 Score: 292.7 bits (748), Expect = 2.5e-75
Identity = 146/215 (67.91%), Postives = 174/215 (80.93%), Query Frame = 0


Query: 1   MVGSLMYLTTTKPDIMYAVSLISRFMESPTKFHLLASKRILRYIKGTPDLGILYQRKRKL 60
           +VGSLMYLT T+P IMY+VSLIS +ME+PT+ HLLA+KRILRY++GT D G+ Y++  KL
Sbjct: 86  IVGSLMYLTATRPHIMYSVSLISSYMENPTEIHLLAAKRILRYLQGTRDFGLFYKKGEKL 145

Query: 61  NFVGFSDSDYAGDLNDRKSTSGYVFMLGSGVISWSSKKQPIV---TTEAELVAAASRACQ 120
              GF+DSDYAGD +DR+STSGYVFMLG+G +SWSSKKQPIV   TTEAE +AA + ACQ
Sbjct: 146 ELFGFTDSDYAGDQDDRRSTSGYVFMLGTGAVSWSSKKQPIVSLSTTEAEFIAATACACQ 205

Query: 121 AIWLRNILENLHYKQEEASIIICDNTSTIKLSRNPVLHGRRKHISVRYHYLRHLINDGIK 180
           AIWLR ILE L +KQ EA+ + CDN S IKLS+NPVLHGR KHI V+Y++LR L NDG  
Sbjct: 206 AIWLRRILEELQFKQVEATTVFCDNNSAIKLSKNPVLHGRSKHIDVKYYFLRDLSNDGTI 265

Query: 181 NLSYCKSEDQVADILTKPLKLATFVKLLSLLGAVS 213
            L YC+SEDQVADI TKPLKLATFV+L  LLG  S
Sbjct: 266 KLVYCRSEDQVADIQTKPLKLATFVRLRGLLGVCS 300

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BLAST of Cmc01g0015951 vs. NCBI nr
Match: GFY80982.1 (hypothetical protein Acr_01g0007910 [Actinidia rufa])

HSP 1 Score: 290.8 bits (743), Expect = 9.7e-75
Identity = 147/215 (68.37%), Postives = 175/215 (81.40%), Query Frame = 0


Query: 1   MVGSLMYLTTTKPDIMYAVSLISRFMESPTKFHLLASKRILRYIKGTPDLGILYQRKRKL 60
           +VGSLMY T+T+PDIM+AVSLISR+ME+PT+ HLL +KRI RY+KGT DLGILY+R    
Sbjct: 744 IVGSLMYATSTRPDIMHAVSLISRYMENPTESHLLVAKRIFRYLKGTTDLGILYKRGECS 803

Query: 61  NFVGFSDSDYAGDLNDRKSTSGYVFMLGSGVISWSSKKQPIV---TTEAELVAAASRACQ 120
           + +GFSDSDYAGDL+DRKSTSGY FM+ SG +SWSSKKQPIV   TTEAE VAAAS +CQ
Sbjct: 804 SLIGFSDSDYAGDLDDRKSTSGYAFMMSSGAVSWSSKKQPIVTLSTTEAEFVAAASGSCQ 863

Query: 121 AIWLRNILENLHYKQEEASIIICDNTSTIKLSRNPVLHGRRKHISVRYHYLRHLINDGIK 180
           AIWLR +LE LH  Q+  ++I CDN STIKLSRNPVLHGR KHI VRYH+LR L  DGI 
Sbjct: 864 AIWLRRLLEILHNHQQGPTLIYCDNVSTIKLSRNPVLHGRSKHIDVRYHFLRDLCKDGII 923

Query: 181 NLSYCKSEDQVADILTKPLKLATFVKLLSLLGAVS 213
           +L +C+SE+Q+ADILTKPLK   F+KL  L+G  S
Sbjct: 924 DLVFCESENQIADILTKPLKPVMFLKLRRLIGVCS 958

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BLAST of Cmc01g0015951 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.3e-42
Identity = 92/212 (43.40%), Postives = 130/212 (61.32%), Query Frame = 0


Query: 1    MVGSLMYLTTTKPDIMYAVSLISRFMESPTKFHLLASKRILRYIKGTPDLGILYQRKRKL 60
            +VGSL YL  T+PDI YAV+ +S+FM  PT+ HL A KRILRY+ GTP+ GI  ++   L
Sbjct: 1248 IVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTL 1307

Query: 61   NFVGFSDSDYAGDLNDRKSTSGYVFMLGSGVISWSSKKQPIV---TTEAELVAAASRACQ 120
            +   +SD+D+AGD +D  ST+GY+  LG   ISWSSKKQ  V   +TEAE  + A+ + +
Sbjct: 1308 SLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSE 1367

Query: 121  AIWLRNILENLHYKQEEASIIICDNTSTIKLSRNPVLHGRRKHISVRYHYLRHLINDGIK 180
              W+ ++L  L  +     +I CDN     L  NPV H R KHI++ YH++R+ +  G  
Sbjct: 1368 MQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGAL 1427

Query: 181  NLSYCKSEDQVADILTKPLKLATFVKLLSLLG 210
             + +  + DQ+AD LTKPL    F    S +G
Sbjct: 1428 RVVHVSTHDQLADTLTKPLSRTAFQNFASKIG 1459

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BLAST of Cmc01g0015951 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 7.3e-41
Identity = 88/214 (41.12%), Postives = 128/214 (59.81%), Query Frame = 0


Query: 1    MVGSLMYLTTTKPDIMYAVSLISRFMESPTKFHLLASKRILRYIKGTPDLGILYQRKRKL 60
            +VGSL YL  T+PD+ YAV+ +S++M  PT  H  A KR+LRY+ GTPD GI  ++   L
Sbjct: 1231 IVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTL 1290

Query: 61   NFVGFSDSDYAGDLNDRKSTSGYVFMLGSGVISWSSKKQPIV---TTEAELVAAASRACQ 120
            +   +SD+D+AGD +D  ST+GY+  LG   ISWSSKKQ  V   +TEAE  + A+ + +
Sbjct: 1291 SLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSE 1350

Query: 121  AIWLRNILENLHYKQEEASIIICDNTSTIKLSRNPVLHGRRKHISVRYHYLRHLINDGIK 180
              W+ ++L  L  +     +I CDN     L  NPV H R KHI++ YH++R+ +  G  
Sbjct: 1351 LQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQSGAL 1410

Query: 181  NLSYCKSEDQVADILTKPLKLATFVKLLSLLGAV 212
             + +  + DQ+AD LTKPL    F      +G +
Sbjct: 1411 RVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGVI 1444

[Close]

BLAST of Cmc01g0015951 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 4.1e-36
Identity = 87/212 (41.04%), Postives = 129/212 (60.85%), Query Frame = 0


Query: 2    VGSLMY-LTTTKPDIMYAVSLISRFMESPTKFHLLASKRILRYIKGTPDLGILYQRKRKL 61
            VGSLMY +  T+PDI +AV ++SRF+E+P K H  A K ILRY++GT    + +     +
Sbjct: 1115 VGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPI 1174

Query: 62   NFVGFSDSDYAGDLNDRKSTSGYVFMLGSGVISWSSKKQPIV---TTEAELVAAASRACQ 121
               G++D+D AGD+++RKS++GY+F    G ISW SK Q  V   TTEAE +AA     +
Sbjct: 1175 -LKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKE 1234

Query: 122  AIWLRNILENLHYKQEEASIIICDNTSTIKLSRNPVLHGRRKHISVRYHYLRHLINDGIK 181
             IWL+  L+ L   Q+E  ++ CD+ S I LS+N + H R KHI VRYH++R +++D   
Sbjct: 1235 MIWLKRFLQELGLHQKE-YVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESL 1294

Query: 182  NLSYCKSEDQVADILTKPLKLATFVKLLSLLG 210
             +    + +  AD+LTK +    F     L+G
Sbjct: 1295 KVLKISTNENPADMLTKVVPRNKFELCKELVG 1324

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BLAST of Cmc01g0015951 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 144.8 bits (364), Expect = 1.1e-33
Identity = 82/216 (37.96%), Postives = 129/216 (59.72%), Query Frame = 0


Query: 1    MVGSLMY-LTTTKPDIMYAVSLISRFMESPTKFHLLASKRILRYIKGTPDLGILYQRKRK 60
            ++G LMY +  T+PD+  AV+++SR+            KR+LRY+KGT D+ +++++   
Sbjct: 1184 LIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLA 1243

Query: 61   L--NFVGFSDSDYAGDLNDRKSTSGYVF-MLGSGVISWSSKKQPIV---TTEAELVAAAS 120
                 +G+ DSD+AG   DRKST+GY+F M    +I W++K+Q  V   +TEAE +A   
Sbjct: 1244 FENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFE 1303

Query: 121  RACQAIWLRNILENLHYKQEEASIIICDNTSTIKLSRNPVLHGRRKHISVRYHYLRHLIN 180
               +A+WL+ +L +++ K E    I  DN   I ++ NP  H R KHI ++YH+ R  + 
Sbjct: 1304 AVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQ 1363

Query: 181  DGIKNLSYCKSEDQVADILTKPLKLATFVKLLSLLG 210
            + +  L Y  +E+Q+ADI TKPL  A FV+L   LG
Sbjct: 1364 NNVICLEYIPTENQLADIFTKPLPAARFVELRDKLG 1399

[Close]

BLAST of Cmc01g0015951 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.7e-21
Identity = 54/124 (43.55%), Postives = 78/124 (62.90%), Query Frame = 0


Query: 2   VGSLMYL-TTTKPDIMYAVSLISRFMESPTKFHLLASKRILRYIKGTPDLGILYQRKRKL 61
           VG++MYL   T+PD+  AV ++S+F   P   H  A KR+LRY++ T   G+ + R    
Sbjct: 10  VGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYGLEFTRAGTA 69

Query: 62  NFVGFSDSDYAGDLNDRKSTSGYVFMLGSGVISWSSKKQPIV---TTEAELVAAASRACQ 121
             VG+SD+D+AGD+  R+STSGY+F L  G +SW SKKQ  V   +TE E +A +    +
Sbjct: 70  KLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMALSEATQE 129

[Close]

BLAST of Cmc01g0015951 vs. ExPASy TrEMBL
Match: A0A5D3DIK7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G002420 PE=4 SV=1)

HSP 1 Score: 414.8 bits (1065), Expect = 2.1e-112
Identity = 213/217 (98.16%), Postives = 214/217 (98.62%), Query Frame = 0


Query: 1   MVGSLMYLTTTKPDIMYAVSLISRFMESPTKFHLLASKRILRYIKGTPDLGILYQRKRKL 60
           MVGSLMYLTTTKPDIMYAVSLISRFMESPT+FHLLASKRILRYIKGTPDLGILYQRKRKL
Sbjct: 338 MVGSLMYLTTTKPDIMYAVSLISRFMESPTEFHLLASKRILRYIKGTPDLGILYQRKRKL 397

Query: 61  NFVGFSDSDYAGDLNDRKSTSGYVFMLGSGVISWSSKKQPIVTTEAELVAAASRACQAIW 120
           NFVGFSDSDYAGDLNDRKSTSGYVFML SGVISWSSKKQPIVTTEAELVAAASRACQAIW
Sbjct: 398 NFVGFSDSDYAGDLNDRKSTSGYVFMLDSGVISWSSKKQPIVTTEAELVAAASRACQAIW 457

Query: 121 LRNILENLHYKQEEASIIICDNTSTIKLSRNPVLHGRRKHISVRYHYLRHLINDGIKNLS 180
           LRNILENLHYKQEEASIIICDNTSTIKLSRNPVLHGR KHISVRYHYLRHLINDGI NLS
Sbjct: 458 LRNILENLHYKQEEASIIICDNTSTIKLSRNPVLHGRSKHISVRYHYLRHLINDGIINLS 517

Query: 181 YCKSEDQVADILTKPLKLATFVKLLSLLGAVSFTSLN 218
           YCKSEDQVADILTKPLKLATFVKLLSLLGAVSFTSLN
Sbjct: 518 YCKSEDQVADILTKPLKLATFVKLLSLLGAVSFTSLN 554

[Close]

BLAST of Cmc01g0015951 vs. ExPASy TrEMBL
Match: A0A5D3DVM8 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold22G00040 PE=4 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 8.2e-96
Identity = 188/220 (85.45%), Postives = 196/220 (89.09%), Query Frame = 0


Query: 1   MVGSLMYLTTTKPDIMYAVSLISRFMESPTKFHLLASKRILRYIKGTPDLGILYQRKRKL 60
           MVGSLMYLT T+PDIMYAVS ISRFM SP KFHLLA+KRILRYIKGTPDLG+LYQR+RKL
Sbjct: 124 MVGSLMYLTATRPDIMYAVSSISRFMNSPIKFHLLAAKRILRYIKGTPDLGMLYQRRRKL 183

Query: 61  NFVGFSDSDYAGDLNDRKSTSGYVFMLGSGVISWSSKKQPIV---TTEAELVAAASRACQ 120
           N VGFSDSDYAGDLNDRKS SGYVFMLGSGVISWSSKKQPIV   TTEAELV A S ACQ
Sbjct: 184 NLVGFSDSDYAGDLNDRKSISGYVFMLGSGVISWSSKKQPIVTLSTTEAELVVATSCACQ 243

Query: 121 AIWLRNILENLHYKQEEASIIICDNTSTIKLSRNPVLHGRRKHISVRYHYLRHLINDGIK 180
           AIWLRNILENL+YKQEEASII  DNTSTIKLSRN VLH R KHI +RYHYLR  INDGI 
Sbjct: 244 AIWLRNILENLNYKQEEASIIHYDNTSTIKLSRNRVLHERSKHIDIRYHYLRDFINDGII 303

Query: 181 NLSYCKSEDQVADILTKPLKLATFVKLLSLLGAVSFTSLN 218
           NLSYCKSEDQV DILTKPLKLATF+KL SLLG +SFTSLN
Sbjct: 304 NLSYCKSEDQVTDILTKPLKLATFLKLRSLLGVISFTSLN 343

[Close]

BLAST of Cmc01g0015951 vs. ExPASy TrEMBL
Match: A0A6P5SZW2 (uncharacterized protein LOC110761517 OS=Prunus avium OX=42229 GN=LOC110761517 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 1.2e-75
Identity = 146/215 (67.91%), Postives = 174/215 (80.93%), Query Frame = 0


Query: 1   MVGSLMYLTTTKPDIMYAVSLISRFMESPTKFHLLASKRILRYIKGTPDLGILYQRKRKL 60
           +VGSLMYLT T+P IMY+VSLIS +ME+PT+ HLLA+KRILRY++GT D G+ Y++  KL
Sbjct: 86  IVGSLMYLTATRPHIMYSVSLISSYMENPTEIHLLAAKRILRYLQGTRDFGLFYKKGEKL 145

Query: 61  NFVGFSDSDYAGDLNDRKSTSGYVFMLGSGVISWSSKKQPIV---TTEAELVAAASRACQ 120
              GF+DSDYAGD +DR+STSGYVFMLG+G +SWSSKKQPIV   TTEAE +AA + ACQ
Sbjct: 146 ELFGFTDSDYAGDQDDRRSTSGYVFMLGTGAVSWSSKKQPIVSLSTTEAEFIAATACACQ 205

Query: 121 AIWLRNILENLHYKQEEASIIICDNTSTIKLSRNPVLHGRRKHISVRYHYLRHLINDGIK 180
           AIWLR ILE L +KQ EA+ + CDN S IKLS+NPVLHGR KHI V+Y++LR L NDG  
Sbjct: 206 AIWLRRILEELQFKQVEATTVFCDNNSAIKLSKNPVLHGRSKHIDVKYYFLRDLSNDGTI 265

Query: 181 NLSYCKSEDQVADILTKPLKLATFVKLLSLLGAVS 213
            L YC+SEDQVADI TKPLKLATFV+L  LLG  S
Sbjct: 266 KLVYCRSEDQVADIQTKPLKLATFVRLRGLLGVCS 300

[Close]

BLAST of Cmc01g0015951 vs. ExPASy TrEMBL
Match: A0A7J0E3Y2 (Integrase catalytic domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_01g0007910 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 4.7e-75
Identity = 147/215 (68.37%), Postives = 175/215 (81.40%), Query Frame = 0


Query: 1   MVGSLMYLTTTKPDIMYAVSLISRFMESPTKFHLLASKRILRYIKGTPDLGILYQRKRKL 60
           +VGSLMY T+T+PDIM+AVSLISR+ME+PT+ HLL +KRI RY+KGT DLGILY+R    
Sbjct: 744 IVGSLMYATSTRPDIMHAVSLISRYMENPTESHLLVAKRIFRYLKGTTDLGILYKRGECS 803

Query: 61  NFVGFSDSDYAGDLNDRKSTSGYVFMLGSGVISWSSKKQPIV---TTEAELVAAASRACQ 120
           + +GFSDSDYAGDL+DRKSTSGY FM+ SG +SWSSKKQPIV   TTEAE VAAAS +CQ
Sbjct: 804 SLIGFSDSDYAGDLDDRKSTSGYAFMMSSGAVSWSSKKQPIVTLSTTEAEFVAAASGSCQ 863

Query: 121 AIWLRNILENLHYKQEEASIIICDNTSTIKLSRNPVLHGRRKHISVRYHYLRHLINDGIK 180
           AIWLR +LE LH  Q+  ++I CDN STIKLSRNPVLHGR KHI VRYH+LR L  DGI 
Sbjct: 864 AIWLRRLLEILHNHQQGPTLIYCDNVSTIKLSRNPVLHGRSKHIDVRYHFLRDLCKDGII 923

Query: 181 NLSYCKSEDQVADILTKPLKLATFVKLLSLLGAVS 213
           +L +C+SE+Q+ADILTKPLK   F+KL  L+G  S
Sbjct: 924 DLVFCESENQIADILTKPLKPVMFLKLRRLIGVCS 958

[Close]

BLAST of Cmc01g0015951 vs. ExPASy TrEMBL
Match: A0A6A1VCV3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Morella rubra OX=262757 GN=CJ030_MR6G010880 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.4e-74
Identity = 142/212 (66.98%), Postives = 175/212 (82.55%), Query Frame = 0


Query: 1   MVGSLMYLTTTKPDIMYAVSLISRFMESPTKFHLLASKRILRYIKGTPDLGILYQRKRKL 60
           +VGSLMYLT T+PDIM+AVS+ISR+ME PT+ HLLA+KRILRY++GT + G+ +++    
Sbjct: 72  IVGSLMYLTATRPDIMHAVSVISRYMECPTEIHLLAAKRILRYLQGTKEFGLFFKKGENS 131

Query: 61  NFVGFSDSDYAGDLNDRKSTSGYVFMLGSGVISWSSKKQPIV---TTEAELVAAASRACQ 120
           + VGF++SDYAGD +DRKSTSGYVFMLG+GV+SWSSKKQPIV   TTEAE VAA + ACQ
Sbjct: 132 DLVGFTNSDYAGDSDDRKSTSGYVFMLGTGVVSWSSKKQPIVTLSTTEAEFVAATACACQ 191

Query: 121 AIWLRNILENLHYKQEEASIIICDNTSTIKLSRNPVLHGRRKHISVRYHYLRHLINDGIK 180
           AIWL+ ILE L +K++  ++I CDN+S IKLS+NPVLHGR KHI V+YH+LR L NDGI 
Sbjct: 192 AIWLKKILEELQFKEDGPTLIYCDNSSAIKLSKNPVLHGRSKHIDVKYHFLRDLTNDGII 251

Query: 181 NLSYCKSEDQVADILTKPLKLATFVKLLSLLG 210
           NL YC+SEDQ+ADILTKPLK   F KL  LLG
Sbjct: 252 NLVYCRSEDQIADILTKPLKFPAFQKLRELLG 283

[Close]

BLAST of Cmc01g0015951 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 119.4 bits (298), Expect = 3.6e-27
Identity = 74/222 (33.33%), Postives = 115/222 (51.80%), Query Frame = 0


Query: 1   MVGSLMYLTTTKPDIMYAVSLISRFMESPTKFHLLASKRILRYIKGTPDLGILYQRKRKL 60
           ++G LMYL  T+ DI +AV+ +S+F E+P   H  A  +IL YIKGT   G+ Y  + ++
Sbjct: 381 LIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEM 440

Query: 61  NFVGFSDSDYAGDLNDRKSTSGYVFMLGSGVISWSSKKQPIV---TTEAELVAAASRACQ 120
               FSD+ +    + R+ST+GY   LG+ +ISW SKKQ +V   + EAE  A +    +
Sbjct: 441 QLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDE 500

Query: 121 AIWLRNILENLHYKQEEASIIICDNTSTIKLSRNPVLHGRRKHISVRYHYLRHLINDGIK 180
            +WL      L     + +++ CDNT+ I ++ N V H R KHI    H +R   +    
Sbjct: 501 MMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRER-SVYQA 560

Query: 181 NLSYCKSEDQVADILTK---PLKLATFVKLLSLLGAVSFTSL 217
            LSY        D  T+   P+   T + ++S+ G     +L
Sbjct: 561 TLSYSFQAYDEQDGFTEYLSPILRGTIMYIVSMFGLAGLEAL 601

[Close]

BLAST of Cmc01g0015951 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 102.8 bits (255), Expect = 3.5e-22
Identity = 55/123 (44.72%), Postives = 76/123 (61.79%), Query Frame = 0


Query: 1   MVGSLMYLTTTKPDIMYAVSLISRFMESPTKFHLLASKRILRYIKGTPDLGILYQRKRKL 60
           +VG+L YLT T+PDI YAV+++ + M  PT       KR+LRY+KGT   G+   +  KL
Sbjct: 103 IVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKL 162

Query: 61  NFVGFSDSDYAGDLNDRKSTSGYVFMLGSGVISWSSKKQPIV---TTEAELVAAASRACQ 120
           N   F DSD+AG  + R+ST+G+   LG  +ISWS+K+QP V   +TE E  A A  A +
Sbjct: 163 NVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAE 222

[Close]

BLAST of Cmc01g0015951 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 59.3 bits (142), Expect = 4.4e-09
Identity = 28/78 (35.90%), Postives = 46/78 (58.97%), Query Frame = 0


Query: 6  MYLTTTKPDIMYAVSLISRFMESPTKFHLLASKRILRYIKGTPDLGILYQRKRKLNFVGF 65
          MYLT T+PD+ +AV+ +S+F  +     + A  ++L Y+KGT   G+ Y     L    F
Sbjct: 1  MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60

Query: 66 SDSDYAGDLNDRKSTSGY 84
          +DSD+A   + R+S +G+
Sbjct: 61 ADSDWASCPDTRRSVTGF 78

The following BLAST results are available for this feature:

BLAST of Cmc01g0015951 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK23210.1	4.4e-112	98.16	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0054574.1	1.7e-95	85.45	putative mitochondrial protein [Cucumis melo var. makuwa] >TYK27538.1 putative m...	[more]
XP_038904442.1	5.3e-89	80.91	secreted RxLR effector protein 161-like [Benincasa hispida]	[more]
XP_021819722.1	2.5e-75	67.91	uncharacterized protein LOC110761517 [Prunus avium]	[more]
GFY80982.1	9.7e-75	68.37	hypothetical protein Acr_01g0007910 [Actinidia rufa]	[more]

BLAST of Cmc01g0015951 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	1.3e-42	43.40	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	7.3e-41	41.12	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P10978	4.1e-36	41.04	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.1e-33	37.96	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P0CV72	1.7e-21	43.55	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]

BLAST of Cmc01g0015951 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DIK7	2.1e-112	98.16	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DVM8	8.2e-96	85.45	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A6P5SZW2	1.2e-75	67.91	uncharacterized protein LOC110761517 OS=Prunus avium OX=42229 GN=LOC110761517 PE...	[more]
A0A7J0E3Y2	4.7e-75	68.37	Integrase catalytic domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr...	[more]
A0A6A1VCV3	1.4e-74	66.98	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Morella rubra OX=...	[more]

BLAST of Cmc01g0015951 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	3.6e-27	33.33	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	3.5e-22	44.72	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	4.4e-09	35.90	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 74..207
None	No IPR available	PANTHER	PTHR11439:SF355	CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8	coord: 74..207
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 63..196 e-value: 1.13049E-73 score: 217.721
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..166

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0015951.1	Cmc01g0015951.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016779	nucleotidyltransferase activity
molecular_function	GO:0008270	zinc ion binding