Cmc01g0015881 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0015881
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag-pol polyprotein
Location	CMiso1.1chr01: 13726909 .. 13728090 (+)
RNA-Seq Expression	Cmc01g0015881
Synteny	Cmc01g0015881

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTAAAGAGTGCCTTCTTAAATGGATATTTGAATGAGGAGGTTTATGTTGCTCAACCAAAAGATTTTGTTGATTCCGAGCACCCAAAGCATGTGTATAAGCTCAACAAAGCTTTATATGGGCTAAAGCAAGCTCCGAGAGCTTGGTATGAACGACTAACTGTTTACTTGAGAGGTAAAGGATATTCTAAAGGAGAAATTGACAAGACCTTGTTTATACACAGGAAATCTGATCAACTTTTGGTTGCTCAAATTTATGTTGATGACATCATTTTTAGAGGTTTTCCTCACGATCTAGTAAATAATTTCATTAACATCATGGAGTCAGAATTCGAAATGAGCATGGTTGGAGAACTTCCATGCTTTTTGGGTTTTCAAATTAAGCAAAAGAATGACGACATCGTCATATCTCAGAAAAAGTATGCCAAGAATATGGCTAAAAAGTTTGGTTTGGAACAGGCTCGAAATAAGCGGACTCCAGCTGCGACACATGTTAAACTTACAAGAGACAATGATGGTGCTGAAGTTGATCACAAACTCTACAGGAGTATAGTAAGCAACTTATTATATTTAACAGCAAGTCGACCTGACATAGCTTATGCTGTAGGAATATGTGCTCGTTATCAAGCAGATCCCCGCATCTCTCACCTAGAAGCTGTTAAACGAATTCTTAAGTATGTTCATGGGACCAATGACTTTGGAATGATGTATTCCTATGATACCACCCCCACTCTTGTTGGATATTGTGATGCTGACTGGGTAGGTTTAGCTGATGATCGTAAAAGTACGTCTGGAGGATGTTTCTTTTTAGGAAACAATTTAATTTCTTGGTTAAGTAAGAAGCAAAACTGTGTCTCTTTATCTACAACTGAAACTGAATATATAGTAGCAGGTAGTGGTTGCACACAGTTGATTTGGATGAAAAATATGTTGCATGAATATGGCTTTGATCAGCACACTATAACGTTGTATTCTGACAATATGAGCGCAATTGATATATCGAAGAATCCTGTTCAACATAGTCGAACAAAGCACACTGACATAAGACATCACTTTATTCGTGAACTTGTTGAAGATAAAGTAATAAGGCTTGATCATATTCGTTCTAACTTACAATTAGCCGATATTTTCACTAACCTCTGGATGCGAACTCATTTGAATACTTACGTGCTGGTTTAG

mRNA sequence

ATGGATGTAAAGAGTGCCTTCTTAAATGGATATTTGAATGAGGAGGTTTATGTTGCTCAACCAAAAGATTTTGTTGATTCCGAGCACCCAAAGCATGTGTATAAGCTCAACAAAGCTTTATATGGGCTAAAGCAAGCTCCGAGAGCTTGGTATGAACGACTAACTGTTTACTTGAGAGGTAAAGGATATTCTAAAGGAGAAATTGACAAGACCTTGTTTATACACAGGAAATCTGATCAACTTTTGGTTGCTCAAATTTATGTTGATGACATCATTTTTAGAGGTTTTCCTCACGATCTAGTAAATAATTTCATTAACATCATGGAGTCAGAATTCGAAATGAGCATGGTTGGAGAACTTCCATGCTTTTTGGGTTTTCAAATTAAGCAAAAGAATGACGACATCGTCATATCTCAGAAAAAGTATGCCAAGAATATGGCTAAAAAGTTTGGTTTGGAACAGGCTCGAAATAAGCGGACTCCAGCTGCGACACATGTTAAACTTACAAGAGACAATGATGGTGCTGAAGTTGATCACAAACTCTACAGGAGTATAGTAAGCAACTTATTATATTTAACAGCAAGTCGACCTGACATAGCTTATGCTGTAGGAATATGTGCTCGTTATCAAGCAGATCCCCGCATCTCTCACCTAGAAGCTGTTAAACGAATTCTTAAGTATGTTCATGGGACCAATGACTTTGGAATGATGTATTCCTATGATACCACCCCCACTCTTGTTGGATATTGTGATGCTGACTGGGTAGGTTTAGCTGATGATCGTAAAAGTACGTCTGGAGGATGTTTCTTTTTAGGAAACAATTTAATTTCTTGGTTAAGTAAGAAGCAAAACTGTGTCTCTTTATCTACAACTGAAACTGAATATATAGTAGCAGGTAGTGGTTGCACACAGTTGATTTGGATGAAAAATATGTTGCATGAATATGGCTTTGATCAGCACACTATAACGTTGTATTCTGACAATATGAGCGCAATTGATATATCGAAGAATCCTGTTCAACATAGTCGAACAAAGCACACTGACATAAGACATCACTTTATTCGTGAACTTGTTGAAGATAAAGTAATAAGGCTTGATCATATTCGTTCTAACTTACAATTAGCCGATATTTTCACTAACCTCTGGATGCGAACTCATTTGAATACTTACGTGCTGGTTTAG

Coding sequence (CDS)

ATGGATGTAAAGAGTGCCTTCTTAAATGGATATTTGAATGAGGAGGTTTATGTTGCTCAACCAAAAGATTTTGTTGATTCCGAGCACCCAAAGCATGTGTATAAGCTCAACAAAGCTTTATATGGGCTAAAGCAAGCTCCGAGAGCTTGGTATGAACGACTAACTGTTTACTTGAGAGGTAAAGGATATTCTAAAGGAGAAATTGACAAGACCTTGTTTATACACAGGAAATCTGATCAACTTTTGGTTGCTCAAATTTATGTTGATGACATCATTTTTAGAGGTTTTCCTCACGATCTAGTAAATAATTTCATTAACATCATGGAGTCAGAATTCGAAATGAGCATGGTTGGAGAACTTCCATGCTTTTTGGGTTTTCAAATTAAGCAAAAGAATGACGACATCGTCATATCTCAGAAAAAGTATGCCAAGAATATGGCTAAAAAGTTTGGTTTGGAACAGGCTCGAAATAAGCGGACTCCAGCTGCGACACATGTTAAACTTACAAGAGACAATGATGGTGCTGAAGTTGATCACAAACTCTACAGGAGTATAGTAAGCAACTTATTATATTTAACAGCAAGTCGACCTGACATAGCTTATGCTGTAGGAATATGTGCTCGTTATCAAGCAGATCCCCGCATCTCTCACCTAGAAGCTGTTAAACGAATTCTTAAGTATGTTCATGGGACCAATGACTTTGGAATGATGTATTCCTATGATACCACCCCCACTCTTGTTGGATATTGTGATGCTGACTGGGTAGGTTTAGCTGATGATCGTAAAAGTACGTCTGGAGGATGTTTCTTTTTAGGAAACAATTTAATTTCTTGGTTAAGTAAGAAGCAAAACTGTGTCTCTTTATCTACAACTGAAACTGAATATATAGTAGCAGGTAGTGGTTGCACACAGTTGATTTGGATGAAAAATATGTTGCATGAATATGGCTTTGATCAGCACACTATAACGTTGTATTCTGACAATATGAGCGCAATTGATATATCGAAGAATCCTGTTCAACATAGTCGAACAAAGCACACTGACATAAGACATCACTTTATTCGTGAACTTGTTGAAGATAAAGTAATAAGGCTTGATCATATTCGTTCTAACTTACAATTAGCCGATATTTTCACTAACCTCTGGATGCGAACTCATTTGAATACTTACGTGCTGGTTTAG

Protein sequence

MDVKSAFLNGYLNEEVYVAQPKDFVDSEHPKHVYKLNKALYGLKQAPRAWYERLTVYLRGKGYSKGEIDKTLFIHRKSDQLLVAQIYVDDIIFRGFPHDLVNNFINIMESEFEMSMVGELPCFLGFQIKQKNDDIVISQKKYAKNMAKKFGLEQARNKRTPAATHVKLTRDNDGAEVDHKLYRSIVSNLLYLTASRPDIAYAVGICARYQADPRISHLEAVKRILKYVHGTNDFGMMYSYDTTPTLVGYCDADWVGLADDRKSTSGGCFFLGNNLISWLSKKQNCVSLSTTETEYIVAGSGCTQLIWMKNMLHEYGFDQHTITLYSDNMSAIDISKNPVQHSRTKHTDIRHHFIRELVEDKVIRLDHIRSNLQLADIFTNLWMRTHLNTYVLV

Homology

[Close]

BLAST of Cmc01g0015881 vs. NCBI nr
Match: TYK23188.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 775.8 bits (2002), Expect = 1.8e-220
Identity = 378/393 (96.18%), Postives = 383/393 (97.46%), Query Frame = 0


Query: 1   MDVKSAFLNGYLNEEVYVAQPKDFVDSEHPKHVYKLNKALYGLKQAPRAWYERLTVYLRG 60
           MDVKSAFLNGYLNEEVYVAQPKDFVDSEHPKHVYKLNKALYGLKQAPR WYERLTVYLRG
Sbjct: 1   MDVKSAFLNGYLNEEVYVAQPKDFVDSEHPKHVYKLNKALYGLKQAPRVWYERLTVYLRG 60

Query: 61  KGYSKGEIDKTLFIHRKSDQLLVAQIYVDDIIFRGFPHDLVNNFINIMESEFEMSMVGEL 120
           KGYS+GEIDKTLFIHRKSDQLLVAQIYVDDIIF GFPHDLVNNFINIM+SEFEMSMVGEL
Sbjct: 61  KGYSRGEIDKTLFIHRKSDQLLVAQIYVDDIIFGGFPHDLVNNFINIMQSEFEMSMVGEL 120

Query: 121 PCFLGFQIKQKNDDIVISQKKYAKNMAKKFGLEQARNKRTPAATHVKLTRDNDGAEVDHK 180
            CFLGFQIKQKNDDI+ISQKKYAKNMAKKFGLEQARNKRTPAATHVKLTRDNDGAEVDHK
Sbjct: 121 SCFLGFQIKQKNDDIIISQKKYAKNMAKKFGLEQARNKRTPAATHVKLTRDNDGAEVDHK 180

Query: 181 LYRSIVSNLLYLTASRPDIAYAVGICARYQADPRISHLEAVKRILKYVHGTNDFGMMYSY 240
           LYRSIVSNLLYLTASRPDIAYAVGICARYQADPRISHLEAVKRILKYVHGTNDFGMMYSY
Sbjct: 181 LYRSIVSNLLYLTASRPDIAYAVGICARYQADPRISHLEAVKRILKYVHGTNDFGMMYSY 240

Query: 241 DTTPTLVGYCDADWVGLADDRKSTSGGCFFLGNNLISWLSKKQNCVSLSTTETEYIVAGS 300
           DTTPTLVGYCDADW GLADDRKSTSGGCFFLGNNLI WLSKKQNCVSLSTTE EYIVAGS
Sbjct: 241 DTTPTLVGYCDADWAGLADDRKSTSGGCFFLGNNLIYWLSKKQNCVSLSTTEAEYIVAGS 300

Query: 301 GCTQLIWMKNMLHEYGFDQHTITLYSDNMSAIDISKNPVQHSRTKHTDIRHHFIRELVED 360
           GCTQLIWM+N+L EYGFDQHTITLYSDNMSAIDISKNPVQHSR KH DIRHHFIRELVED
Sbjct: 301 GCTQLIWMENILDEYGFDQHTITLYSDNMSAIDISKNPVQHSRIKHIDIRHHFIRELVED 360

Query: 361 KVIRLDHIRSNLQLADIFTNLWMRTHLNTYVLV 394
           KVIRLDHIRSNLQLADIFTNLWMRTH NTYVLV
Sbjct: 361 KVIRLDHIRSNLQLADIFTNLWMRTHSNTYVLV 393

[Close]

BLAST of Cmc01g0015881 vs. NCBI nr
Match: KAA0066740.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK27888.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 605.1 bits (1559), Expect = 4.2e-169
Identity = 304/379 (80.21%), Postives = 322/379 (84.96%), Query Frame = 0


Query: 1   MDVKSAFLNGYLNEEVYVAQPKDFVDSEHPKHVYKLNKALYGLKQAPRAWYERLTVYLRG 60
           MDVKS FLNGYLNEEVYVAQPK FVDSEH KHVYKLNKALYGLKQAPRAWY+ LTVYLRG
Sbjct: 1   MDVKSVFLNGYLNEEVYVAQPKGFVDSEHLKHVYKLNKALYGLKQAPRAWYDWLTVYLRG 60

Query: 61  KGYSKGEIDKTLFIHRKSDQLLVAQIYVDDIIFRGFPHDLVNNFINIMESEFEMSMVGEL 120
           KGYS+GEIDKTLFIHRKSDQLLVAQIYVDDIIF GFP DLVNNFINIM+SEFEMSMVGEL
Sbjct: 61  KGYSRGEIDKTLFIHRKSDQLLVAQIYVDDIIFGGFPQDLVNNFINIMQSEFEMSMVGEL 120

Query: 121 PCFLGFQIKQKNDDIVISQKKYAKNMAKKFGLEQARNKRTPAATHVKLTRDNDGAEVDHK 180
            CFLG QI+QKNDDI ISQKKYA+N+ KKFGLEQARNKRTPA THVKLT+D +GAEVDHK
Sbjct: 121 LCFLGLQIRQKNDDIFISQKKYARNIVKKFGLEQARNKRTPATTHVKLTKDIEGAEVDHK 180

Query: 181 LYRSIVSNLLYLTASRPDIAYAVGICARYQADPRISHLEAVKRILKYVHGTNDFGMMYSY 240
           LYRSIV +LLYLTASRPDIAYA+GI ARYQ  PRI+HLEA+KRILKYVH T DFGMMYSY
Sbjct: 181 LYRSIVGSLLYLTASRPDIAYAMGIYARYQVVPRITHLEAIKRILKYVHRTCDFGMMYSY 240

Query: 241 DTTPTLVGYCDADWVGLADDRKSTSGGCFFLGNNLISWLSKKQNCVSLSTTETEYIVAGS 300
           DTTPTLVGYCDADW G  DDRK                             E EYI AGS
Sbjct: 241 DTTPTLVGYCDADWAGSTDDRK----------------------------IEAEYIAAGS 300

Query: 301 GCTQLIWMKNMLHEYGFDQHTITLYSDNMSAIDISKNPVQHSRTKHTDIRHHFIRELVED 360
           GCTQLIWMKN+LHEYGFDQ T+TLY +NMSAIDISKN VQHSRTKH DIRHHFIRE VE+
Sbjct: 301 GCTQLIWMKNVLHEYGFDQDTMTLYCNNMSAIDISKNLVQHSRTKHIDIRHHFIREPVEE 351

Query: 361 KVIRLDHIRSNLQLADIFT 380
           KVI+LDHIRSNLQLA+IFT
Sbjct: 361 KVIKLDHIRSNLQLANIFT 351

[Close]

BLAST of Cmc01g0015881 vs. NCBI nr
Match: KAA0066405.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK00880.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 579.3 bits (1492), Expect = 2.5e-161
Identity = 290/371 (78.17%), Postives = 309/371 (83.29%), Query Frame = 0


Query: 1   MDVKSAFLNGYLNEEVYVAQPKDFVDSEHPKHVYKLNKALYGLKQAPRAWYERLTVYLRG 60
           MDVKS FLNGYLNEEVYVAQPK FVDSEHPKH+YK NKALYGLKQA RAWY+ LTVYLRG
Sbjct: 1   MDVKSTFLNGYLNEEVYVAQPKGFVDSEHPKHMYKFNKALYGLKQASRAWYDWLTVYLRG 60

Query: 61  KGYSKGEIDKTLFIHRKSDQLLVAQIYVDDIIFRGFPHDLVNNFINIMESEFEMSMVGEL 120
           KGYS+GEIDKTLFI+RKSDQLLV QIYVDDIIF GFP DLVNNFINIM+SEF+MSMVGEL
Sbjct: 61  KGYSRGEIDKTLFIYRKSDQLLVTQIYVDDIIFGGFPQDLVNNFINIMQSEFKMSMVGEL 120

Query: 121 PCFLGFQIKQKNDDIVISQKKYAKNMAKKFGLEQARNKRTPAATHVKLTRDNDGAEVDHK 180
            CFLG QIKQ NDDI ISQ+KY +NM KKFGLEQARNKRTPA THVKLT+D + AEVDHK
Sbjct: 121 SCFLGLQIKQNNDDIFISQEKYTRNMVKKFGLEQARNKRTPAVTHVKLTKDTESAEVDHK 180

Query: 181 LYRSIVSNLLYLTASRPDIAYAVGICARYQADPRISHLEAVKRILKYVHGTNDFGMMYSY 240
           LYRSI+ +LLYLTASRPDIAY VGICARYQ DP I+HL AVK ILKYVHGT+DFGMMYSY
Sbjct: 181 LYRSIIGSLLYLTASRPDIAYVVGICARYQVDPCITHLVAVK-ILKYVHGTSDFGMMYSY 240

Query: 241 DTTPTLVGYCDADWVGLADDRKSTSGGCFFLGNNLISWLSKKQNCVSLSTTETEYIVAGS 300
           DTT TLVGYCDADW G ADDRK+T                        S  E EYI AGS
Sbjct: 241 DTTLTLVGYCDADWEGSADDRKNT------------------------SEVEAEYIAAGS 300

Query: 301 GCTQLIWMKNMLHEYGFDQHTITLYSDNMSAIDISKNPVQHSRTKHTDIRHHFIRELVED 360
           GCTQLIW KNML EYGFDQ T+TLY DNMSAIDIS NPVQHSRT+H DIRHHFI ELV+D
Sbjct: 301 GCTQLIWTKNMLLEYGFDQDTMTLYCDNMSAIDISNNPVQHSRTRHIDIRHHFIPELVKD 346

Query: 361 KVIRLDHIRSN 372
           KVI+LDHI SN
Sbjct: 361 KVIKLDHICSN 346

[Close]

BLAST of Cmc01g0015881 vs. NCBI nr
Match: AAO73521.1 (gag-pol polyprotein [Glycine max])

HSP 1 Score: 557.8 bits (1436), Expect = 7.7e-155
Identity = 261/379 (68.87%), Postives = 312/379 (82.32%), Query Frame = 0


Query: 1    MDVKSAFLNGYLNEEVYVAQPKDFVDSEHPKHVYKLNKALYGLKQAPRAWYERLTVYLRG 60
            MDVKSAFLNGYLNEEVYV QPK F D  HP HVY+L KALYGLKQAPRAWYERLT +L  
Sbjct: 1173 MDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQ 1232

Query: 61   KGYSKGEIDKTLFIHRKSDQLLVAQIYVDDIIFRGFPHDLVNNFINIMESEFEMSMVGEL 120
            +GY KG IDKTLF+ + ++ L++AQIYVDDI+F G  ++++ +F+  M+SEFEMS+VGEL
Sbjct: 1233 QGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGEL 1292

Query: 121  PCFLGFQIKQKNDDIVISQKKYAKNMAKKFGLEQARNKRTPAATHVKLTRDNDGAEVDHK 180
              FLG Q+KQ  D I +SQ +YAKN+ KKFG+E A +KRTPA TH+KL++D  G  VD  
Sbjct: 1293 TYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQS 1352

Query: 181  LYRSIVSNLLYLTASRPDIAYAVGICARYQADPRISHLEAVKRILKYVHGTNDFGMMYSY 240
            LYRS++ +LLYLTASRPDI YAVG+CARYQA+P+ISHL  VKRILKYV+GT+D+G+MY +
Sbjct: 1353 LYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGIMYCH 1412

Query: 241  DTTPTLVGYCDADWVGLADDRKSTSGGCFFLGNNLISWLSKKQNCVSLSTTETEYIVAGS 300
             + P LVGYCDADW G ADDRKSTSGGCF+LGNNLISW SKKQNCVSLST E EYI AGS
Sbjct: 1413 CSNPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGS 1472

Query: 301  GCTQLIWMKNMLHEYGFDQHTITLYSDNMSAIDISKNPVQHSRTKHTDIRHHFIRELVED 360
             C+QL+WMK ML EY  +Q  +TLY DNMSAI+ISKNPVQHSRTKH DIRHH+IR+LV+D
Sbjct: 1473 SCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDD 1532

Query: 361  KVIRLDHIRSNLQLADIFT 380
            KVI L H+ +  Q+ADIFT
Sbjct: 1533 KVITLKHVDTEEQIADIFT 1551

[Close]

BLAST of Cmc01g0015881 vs. NCBI nr
Match: AAO73527.1 (gag-pol polyprotein [Glycine max])

HSP 1 Score: 557.8 bits (1436), Expect = 7.7e-155
Identity = 261/379 (68.87%), Postives = 312/379 (82.32%), Query Frame = 0


Query: 1    MDVKSAFLNGYLNEEVYVAQPKDFVDSEHPKHVYKLNKALYGLKQAPRAWYERLTVYLRG 60
            MDVKSAFLNGYLNEEVYV QPK F D  HP HVY+L KALYGLKQAPRAWYERLT +L  
Sbjct: 1175 MDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQ 1234

Query: 61   KGYSKGEIDKTLFIHRKSDQLLVAQIYVDDIIFRGFPHDLVNNFINIMESEFEMSMVGEL 120
            +GY KG IDKTLF+ + ++ L++AQIYVDDI+F G  ++++ +F+  M+SEFEMS+VGEL
Sbjct: 1235 QGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGEL 1294

Query: 121  PCFLGFQIKQKNDDIVISQKKYAKNMAKKFGLEQARNKRTPAATHVKLTRDNDGAEVDHK 180
              FLG Q+KQ  D I +SQ +YAKN+ KKFG+E A +KRTPA TH+KL++D  G  VD  
Sbjct: 1295 TYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQS 1354

Query: 181  LYRSIVSNLLYLTASRPDIAYAVGICARYQADPRISHLEAVKRILKYVHGTNDFGMMYSY 240
            LYRS++ +LLYLTASRPDI YAVG+CARYQA+P+ISHL  VKRILKYV+GT+D+G+MY +
Sbjct: 1355 LYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGIMYCH 1414

Query: 241  DTTPTLVGYCDADWVGLADDRKSTSGGCFFLGNNLISWLSKKQNCVSLSTTETEYIVAGS 300
             + P LVGYCDADW G ADDRKSTSGGCF+LGNNLISW SKKQNCVSLST E EYI AGS
Sbjct: 1415 CSNPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGS 1474

Query: 301  GCTQLIWMKNMLHEYGFDQHTITLYSDNMSAIDISKNPVQHSRTKHTDIRHHFIRELVED 360
             C+QL+WMK ML EY  +Q  +TLY DNMSAI+ISKNPVQHSRTKH DIRHH+IR+LV+D
Sbjct: 1475 SCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDD 1534

Query: 361  KVIRLDHIRSNLQLADIFT 380
            KVI L H+ +  Q+ADIFT
Sbjct: 1535 KVITLKHVDTEEQIADIFT 1553

[Close]

BLAST of Cmc01g0015881 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 5.0e-72
Identity = 151/391 (38.62%), Postives = 232/391 (59.34%), Query Frame = 0


Query: 1    MDVKSAFLNGYLNEEVYVAQPKDFVDSEHPKHVYKLNKALYGLKQAPRAWYERLTVYLRG 60
            +DVK+AFL+G L EE+Y+ QP+ F  +     V KLNK+LYGLKQAPR WY +   +++ 
Sbjct: 921  LDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKS 980

Query: 61   KGYSKGEIDKTLFIHRKSD-QLLVAQIYVDDIIFRGFPHDLVNNFINIMESEFEMSMVGE 120
            + Y K   D  ++  R S+   ++  +YVDD++  G    L+      +   F+M  +G 
Sbjct: 981  QTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGP 1040

Query: 121  LPCFLGFQI--KQKNDDIVISQKKYAKNMAKKFGLEQARNKRTPAATHVKLTRDNDGAEV 180
                LG +I  ++ +  + +SQ+KY + + ++F ++ A+   TP A H+KL++      V
Sbjct: 1041 AQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTV 1100

Query: 181  DHK------LYRSIVSNLLY-LTASRPDIAYAVGICARYQADPRISHLEAVKRILKYVHG 240
            + K       Y S V +L+Y +  +RPDIA+AVG+ +R+  +P   H EAVK IL+Y+ G
Sbjct: 1101 EEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRG 1160

Query: 241  TNDFGMMYSYDTTPTLVGYCDADWVGLADDRKSTSGGCFFLGNNLISWLSKKQNCVSLST 300
            T    + +   + P L GY DAD  G  D+RKS++G  F      ISW SK Q CV+LST
Sbjct: 1161 TTGDCLCFG-GSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALST 1220

Query: 301  TETEYIVAGSGCTQLIWMKNMLHEYGFDQHTITLYSDNMSAIDISKNPVQHSRTKHTDIR 360
            TE EYI A     ++IW+K  L E G  Q    +Y D+ SAID+SKN + H+RTKH D+R
Sbjct: 1221 TEAEYIAATETGKEMIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVR 1280

Query: 361  HHFIRELVEDKVIRLDHIRSNLQLADIFTNL 382
            +H+IRE+V+D+ +++  I +N   AD+ T +
Sbjct: 1281 YHWIREMVDDESLKVLKISTNENPADMLTKV 1310

[Close]

BLAST of Cmc01g0015881 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 4.2e-71
Identity = 146/380 (38.42%), Postives = 217/380 (57.11%), Query Frame = 0


Query: 1    MDVKSAFLNGYLNEEVYVAQPKDFVDSEHPKHVYKLNKALYGLKQAPRAWYERLTVYLRG 60
            +DV +AFL G L +EVY++QP  FVD + P +V +L KA+YGLKQAPRAWY  L  YL  
Sbjct: 1047 LDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLT 1106

Query: 61   KGYSKGEIDKTLFIHRKSDQLLVAQIYVDDIIFRGFPHDLVNNFINIMESEFEMSMVGEL 120
             G+     D +LF+ ++   ++   +YVDDI+  G    L+ + ++ +   F +    +L
Sbjct: 1107 VGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDL 1166

Query: 121  PCFLGFQIKQKNDDIVISQKKYAKNMAKKFGLEQARNKRTPAATHVKLTRDNDGAEVDHK 180
              FLG + K+    + +SQ++Y  ++  +  +  A+   TP AT  KLT  +     D  
Sbjct: 1167 HYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPT 1226

Query: 181  LYRSIVSNLLYLTASRPDIAYAVGICARYQADPRISHLEAVKRILKYVHGTNDFGMMYSY 240
             YR IV +L YL  +RPD++YAV   ++Y   P   H  A+KR+L+Y+ GT D G+    
Sbjct: 1227 EYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKK 1286

Query: 241  DTTPTLVGYCDADWVGLADDRKSTSGGCFFLGNNLISWLSKKQNCVSLSTTETEYIVAGS 300
              T +L  Y DADW G  DD  ST+G   +LG++ ISW SKKQ  V  S+TE EY    +
Sbjct: 1287 GNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVAN 1346

Query: 301  GCTQLIWMKNMLHEYGFD-QHTITLYSDNMSAIDISKNPVQHSRTKHTDIRHHFIRELVE 360
              ++L W+ ++L E G    H   +Y DN+ A  +  NPV HSR KH  + +HFIR  V+
Sbjct: 1347 TSSELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQ 1406

Query: 361  DKVIRLDHIRSNLQLADIFT 380
               +R+ H+ ++ QLAD  T
Sbjct: 1407 SGALRVVHVSTHDQLADTLT 1426

[Close]

BLAST of Cmc01g0015881 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.0e-69
Identity = 148/391 (37.85%), Postives = 221/391 (56.52%), Query Frame = 0


Query: 1    MDVKSAFLNGYLNEEVYVAQPKDFVDSEHPKHVYKLNKALYGLKQAPRAWYERLTVYLRG 60
            +DV +AFL G L ++VY++QP  F+D + P +V KL KALYGLKQAPRAWY  L  YL  
Sbjct: 1064 LDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLT 1123

Query: 61   KGYSKGEIDKTLFIHRKSDQLLVAQIYVDDIIFRGFPHDLVNNFINIMESEFEMSMVGEL 120
             G+     D +LF+ ++   ++   +YVDDI+  G    L++N ++ +   F +    EL
Sbjct: 1124 IGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEEL 1183

Query: 121  PCFLGFQIKQKNDDIVISQKKYAKNMAKKFGLEQARNKRTPAATHVKLTRDNDGAEVDHK 180
              FLG + K+    + +SQ++Y  ++  +  +  A+   TP A   KL+  +     D  
Sbjct: 1184 HYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPT 1243

Query: 181  LYRSIVSNLLYLTASRPDIAYAVGICARYQADPRISHLEAVKRILKYVHGTNDFGMMYSY 240
             YR IV +L YL  +RPDI+YAV   +++   P   HL+A+KRIL+Y+ GT + G+    
Sbjct: 1244 EYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKK 1303

Query: 241  DTTPTLVGYCDADWVGLADDRKSTSGGCFFLGNNLISWLSKKQNCVSLSTTETEYIVAGS 300
              T +L  Y DADW G  DD  ST+G   +LG++ ISW SKKQ  V  S+TE EY    +
Sbjct: 1304 GNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVAN 1363

Query: 301  GCTQLIWMKNMLHEYGFD-QHTITLYSDNMSAIDISKNPVQHSRTKHTDIRHHFIRELVE 360
              +++ W+ ++L E G        +Y DN+ A  +  NPV HSR KH  I +HFIR  V+
Sbjct: 1364 TSSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQ 1423

Query: 361  DKVIRLDHIRSNLQLADIFTNLWMRTHLNTY 391
               +R+ H+ ++ QLAD  T    RT    +
Sbjct: 1424 SGALRVVHVSTHDQLADTLTKPLSRTAFQNF 1454

[Close]

BLAST of Cmc01g0015881 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 240.4 bits (612), Expect = 3.6e-62
Identity = 137/386 (35.49%), Postives = 217/386 (56.22%), Query Frame = 0


Query: 1    MDVKSAFLNGYLNEEVYVAQPKDFVDSEHPKHVYKLNKALYGLKQAPRAWYERLTVYLRG 60
            MDVK+AFLNG L EE+Y+  P+    S +  +V KLNKA+YGLKQA R W+E     L+ 
Sbjct: 1001 MDVKTAFLNGTLKEEIYMRLPQGI--SCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKE 1060

Query: 61   KGYSKGEIDKTLFIHRKS--DQLLVAQIYVDDIIFRGFPHDLVNNFINIMESEFEMSMVG 120
              +    +D+ ++I  K   ++ +   +YVDD++        +NNF   +  +F M+ + 
Sbjct: 1061 CEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLN 1120

Query: 121  ELPCFLGFQIKQKNDDIVISQKKYAKNMAKKFGLEQARNKRTPAATHVKLTRDNDGAEVD 180
            E+  F+G +I+ + D I +SQ  Y K +  KF +E      TP  + +     N   + +
Sbjct: 1121 EIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDCN 1180

Query: 181  HKLYRSIVSNLLY-LTASRPDIAYAVGICARYQADPRISHLEAVKRILKYVHGTNDFGMM 240
                RS++  L+Y +  +RPD+  AV I +RY +       + +KR+L+Y+ GT D  ++
Sbjct: 1181 TPC-RSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLI 1240

Query: 241  YSYDTT--PTLVGYCDADWVGLADDRKSTSGGCFFLGN-NLISWLSKKQNCVSLSTTETE 300
            +  +      ++GY D+DW G   DRKST+G  F + + NLI W +K+QN V+ S+TE E
Sbjct: 1241 FKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAE 1300

Query: 301  YIVAGSGCTQLIWMKNMLHEYGFD-QHTITLYSDNMSAIDISKNPVQHSRTKHTDIRHHF 360
            Y+       + +W+K +L       ++ I +Y DN   I I+ NP  H R KH DI++HF
Sbjct: 1301 YMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHF 1360

Query: 361  IRELVEDKVIRLDHIRSNLQLADIFT 380
             RE V++ VI L++I +  QLADIFT
Sbjct: 1361 AREQVQNNVICLEYIPTENQLADIFT 1383

[Close]

BLAST of Cmc01g0015881 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 161.4 bits (407), Expect = 2.1e-38
Identity = 96/301 (31.89%), Postives = 151/301 (50.17%), Query Frame = 0


Query: 1   MDVKSAFLNGYLNEEVYVAQPKDFVDSEHPKHVYKLNKALYGLKQAPRAWYERLTVYLRG 60
           MDV +AFLN  ++E +YV QP  FV+  +P +V++L   +YGLKQAP  W E +   L+ 
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 61  KGYSKGEIDKTLFIHRKSDQLLVAQIYVDDIIFRGFPHDLVNNFINIMESEFEMSMVGEL 120
            G+ + E +  L+    SD  +   +YVDD++       + +     +   + M  +G++
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 121 PCFLGFQIKQ-KNDDIVISQKKYAKNMAKKFGLEQARNKRTPAATHVKLTRDNDGAEVDH 180
             FLG  I Q  N DI +S + Y    A +  +   +  +TP      L         D 
Sbjct: 121 DKFLGLNIHQSSNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDI 180

Query: 181 KLYRSIVSNLLY-LTASRPDIAYAVGICARYQADPRISHLEAVKRILKYVHGTNDFGMMY 240
             Y+SIV  LL+     RPDI+Y V + +R+  +PR  HLE+ +R+L+Y++ T    + Y
Sbjct: 181 TPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKY 240

Query: 241 SYDTTPTLVGYCDADWVGLADDRKSTSGGCFFLGNNLISWLSKK-QNCVSLSTTETEYIV 299
              +   L  YCDA    + D   ST G    L    ++W SKK +  + + +TE EYI 
Sbjct: 241 RSGSQLALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEYIT 300

[Close]

BLAST of Cmc01g0015881 vs. ExPASy TrEMBL
Match: A0A5D3DI97 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G002180 PE=4 SV=1)

HSP 1 Score: 775.8 bits (2002), Expect = 8.7e-221
Identity = 378/393 (96.18%), Postives = 383/393 (97.46%), Query Frame = 0


Query: 1   MDVKSAFLNGYLNEEVYVAQPKDFVDSEHPKHVYKLNKALYGLKQAPRAWYERLTVYLRG 60
           MDVKSAFLNGYLNEEVYVAQPKDFVDSEHPKHVYKLNKALYGLKQAPR WYERLTVYLRG
Sbjct: 1   MDVKSAFLNGYLNEEVYVAQPKDFVDSEHPKHVYKLNKALYGLKQAPRVWYERLTVYLRG 60

Query: 61  KGYSKGEIDKTLFIHRKSDQLLVAQIYVDDIIFRGFPHDLVNNFINIMESEFEMSMVGEL 120
           KGYS+GEIDKTLFIHRKSDQLLVAQIYVDDIIF GFPHDLVNNFINIM+SEFEMSMVGEL
Sbjct: 61  KGYSRGEIDKTLFIHRKSDQLLVAQIYVDDIIFGGFPHDLVNNFINIMQSEFEMSMVGEL 120

Query: 121 PCFLGFQIKQKNDDIVISQKKYAKNMAKKFGLEQARNKRTPAATHVKLTRDNDGAEVDHK 180
            CFLGFQIKQKNDDI+ISQKKYAKNMAKKFGLEQARNKRTPAATHVKLTRDNDGAEVDHK
Sbjct: 121 SCFLGFQIKQKNDDIIISQKKYAKNMAKKFGLEQARNKRTPAATHVKLTRDNDGAEVDHK 180

Query: 181 LYRSIVSNLLYLTASRPDIAYAVGICARYQADPRISHLEAVKRILKYVHGTNDFGMMYSY 240
           LYRSIVSNLLYLTASRPDIAYAVGICARYQADPRISHLEAVKRILKYVHGTNDFGMMYSY
Sbjct: 181 LYRSIVSNLLYLTASRPDIAYAVGICARYQADPRISHLEAVKRILKYVHGTNDFGMMYSY 240

Query: 241 DTTPTLVGYCDADWVGLADDRKSTSGGCFFLGNNLISWLSKKQNCVSLSTTETEYIVAGS 300
           DTTPTLVGYCDADW GLADDRKSTSGGCFFLGNNLI WLSKKQNCVSLSTTE EYIVAGS
Sbjct: 241 DTTPTLVGYCDADWAGLADDRKSTSGGCFFLGNNLIYWLSKKQNCVSLSTTEAEYIVAGS 300

Query: 301 GCTQLIWMKNMLHEYGFDQHTITLYSDNMSAIDISKNPVQHSRTKHTDIRHHFIRELVED 360
           GCTQLIWM+N+L EYGFDQHTITLYSDNMSAIDISKNPVQHSR KH DIRHHFIRELVED
Sbjct: 301 GCTQLIWMENILDEYGFDQHTITLYSDNMSAIDISKNPVQHSRIKHIDIRHHFIRELVED 360

Query: 361 KVIRLDHIRSNLQLADIFTNLWMRTHLNTYVLV 394
           KVIRLDHIRSNLQLADIFTNLWMRTH NTYVLV
Sbjct: 361 KVIRLDHIRSNLQLADIFTNLWMRTHSNTYVLV 393

[Close]

BLAST of Cmc01g0015881 vs. ExPASy TrEMBL
Match: A0A5D3DWS6 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00720 PE=4 SV=1)

HSP 1 Score: 605.1 bits (1559), Expect = 2.0e-169
Identity = 304/379 (80.21%), Postives = 322/379 (84.96%), Query Frame = 0


Query: 1   MDVKSAFLNGYLNEEVYVAQPKDFVDSEHPKHVYKLNKALYGLKQAPRAWYERLTVYLRG 60
           MDVKS FLNGYLNEEVYVAQPK FVDSEH KHVYKLNKALYGLKQAPRAWY+ LTVYLRG
Sbjct: 1   MDVKSVFLNGYLNEEVYVAQPKGFVDSEHLKHVYKLNKALYGLKQAPRAWYDWLTVYLRG 60

Query: 61  KGYSKGEIDKTLFIHRKSDQLLVAQIYVDDIIFRGFPHDLVNNFINIMESEFEMSMVGEL 120
           KGYS+GEIDKTLFIHRKSDQLLVAQIYVDDIIF GFP DLVNNFINIM+SEFEMSMVGEL
Sbjct: 61  KGYSRGEIDKTLFIHRKSDQLLVAQIYVDDIIFGGFPQDLVNNFINIMQSEFEMSMVGEL 120

Query: 121 PCFLGFQIKQKNDDIVISQKKYAKNMAKKFGLEQARNKRTPAATHVKLTRDNDGAEVDHK 180
            CFLG QI+QKNDDI ISQKKYA+N+ KKFGLEQARNKRTPA THVKLT+D +GAEVDHK
Sbjct: 121 LCFLGLQIRQKNDDIFISQKKYARNIVKKFGLEQARNKRTPATTHVKLTKDIEGAEVDHK 180

Query: 181 LYRSIVSNLLYLTASRPDIAYAVGICARYQADPRISHLEAVKRILKYVHGTNDFGMMYSY 240
           LYRSIV +LLYLTASRPDIAYA+GI ARYQ  PRI+HLEA+KRILKYVH T DFGMMYSY
Sbjct: 181 LYRSIVGSLLYLTASRPDIAYAMGIYARYQVVPRITHLEAIKRILKYVHRTCDFGMMYSY 240

Query: 241 DTTPTLVGYCDADWVGLADDRKSTSGGCFFLGNNLISWLSKKQNCVSLSTTETEYIVAGS 300
           DTTPTLVGYCDADW G  DDRK                             E EYI AGS
Sbjct: 241 DTTPTLVGYCDADWAGSTDDRK----------------------------IEAEYIAAGS 300

Query: 301 GCTQLIWMKNMLHEYGFDQHTITLYSDNMSAIDISKNPVQHSRTKHTDIRHHFIRELVED 360
           GCTQLIWMKN+LHEYGFDQ T+TLY +NMSAIDISKN VQHSRTKH DIRHHFIRE VE+
Sbjct: 301 GCTQLIWMKNVLHEYGFDQDTMTLYCNNMSAIDISKNLVQHSRTKHIDIRHHFIREPVEE 351

Query: 361 KVIRLDHIRSNLQLADIFT 380
           KVI+LDHIRSNLQLA+IFT
Sbjct: 361 KVIKLDHIRSNLQLANIFT 351

[Close]

BLAST of Cmc01g0015881 vs. ExPASy TrEMBL
Match: A0A5D3BPB5 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G00390 PE=4 SV=1)

HSP 1 Score: 579.3 bits (1492), Expect = 1.2e-161
Identity = 290/371 (78.17%), Postives = 309/371 (83.29%), Query Frame = 0


Query: 1   MDVKSAFLNGYLNEEVYVAQPKDFVDSEHPKHVYKLNKALYGLKQAPRAWYERLTVYLRG 60
           MDVKS FLNGYLNEEVYVAQPK FVDSEHPKH+YK NKALYGLKQA RAWY+ LTVYLRG
Sbjct: 1   MDVKSTFLNGYLNEEVYVAQPKGFVDSEHPKHMYKFNKALYGLKQASRAWYDWLTVYLRG 60

Query: 61  KGYSKGEIDKTLFIHRKSDQLLVAQIYVDDIIFRGFPHDLVNNFINIMESEFEMSMVGEL 120
           KGYS+GEIDKTLFI+RKSDQLLV QIYVDDIIF GFP DLVNNFINIM+SEF+MSMVGEL
Sbjct: 61  KGYSRGEIDKTLFIYRKSDQLLVTQIYVDDIIFGGFPQDLVNNFINIMQSEFKMSMVGEL 120

Query: 121 PCFLGFQIKQKNDDIVISQKKYAKNMAKKFGLEQARNKRTPAATHVKLTRDNDGAEVDHK 180
            CFLG QIKQ NDDI ISQ+KY +NM KKFGLEQARNKRTPA THVKLT+D + AEVDHK
Sbjct: 121 SCFLGLQIKQNNDDIFISQEKYTRNMVKKFGLEQARNKRTPAVTHVKLTKDTESAEVDHK 180

Query: 181 LYRSIVSNLLYLTASRPDIAYAVGICARYQADPRISHLEAVKRILKYVHGTNDFGMMYSY 240
           LYRSI+ +LLYLTASRPDIAY VGICARYQ DP I+HL AVK ILKYVHGT+DFGMMYSY
Sbjct: 181 LYRSIIGSLLYLTASRPDIAYVVGICARYQVDPCITHLVAVK-ILKYVHGTSDFGMMYSY 240

Query: 241 DTTPTLVGYCDADWVGLADDRKSTSGGCFFLGNNLISWLSKKQNCVSLSTTETEYIVAGS 300
           DTT TLVGYCDADW G ADDRK+T                        S  E EYI AGS
Sbjct: 241 DTTLTLVGYCDADWEGSADDRKNT------------------------SEVEAEYIAAGS 300

Query: 301 GCTQLIWMKNMLHEYGFDQHTITLYSDNMSAIDISKNPVQHSRTKHTDIRHHFIRELVED 360
           GCTQLIW KNML EYGFDQ T+TLY DNMSAIDIS NPVQHSRT+H DIRHHFI ELV+D
Sbjct: 301 GCTQLIWTKNMLLEYGFDQDTMTLYCDNMSAIDISNNPVQHSRTRHIDIRHHFIPELVKD 346

Query: 361 KVIRLDHIRSN 372
           KVI+LDHI SN
Sbjct: 361 KVIKLDHICSN 346

[Close]

BLAST of Cmc01g0015881 vs. ExPASy TrEMBL
Match: Q84VI4 (Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1)

HSP 1 Score: 557.8 bits (1436), Expect = 3.7e-155
Identity = 261/379 (68.87%), Postives = 312/379 (82.32%), Query Frame = 0


Query: 1    MDVKSAFLNGYLNEEVYVAQPKDFVDSEHPKHVYKLNKALYGLKQAPRAWYERLTVYLRG 60
            MDVKSAFLNGYLNEEVYV QPK F D  HP HVY+L KALYGLKQAPRAWYERLT +L  
Sbjct: 1173 MDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQ 1232

Query: 61   KGYSKGEIDKTLFIHRKSDQLLVAQIYVDDIIFRGFPHDLVNNFINIMESEFEMSMVGEL 120
            +GY KG IDKTLF+ + ++ L++AQIYVDDI+F G  ++++ +F+  M+SEFEMS+VGEL
Sbjct: 1233 QGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGEL 1292

Query: 121  PCFLGFQIKQKNDDIVISQKKYAKNMAKKFGLEQARNKRTPAATHVKLTRDNDGAEVDHK 180
              FLG Q+KQ  D I +SQ +YAKN+ KKFG+E A +KRTPA TH+KL++D  G  VD  
Sbjct: 1293 TYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQS 1352

Query: 181  LYRSIVSNLLYLTASRPDIAYAVGICARYQADPRISHLEAVKRILKYVHGTNDFGMMYSY 240
            LYRS++ +LLYLTASRPDI YAVG+CARYQA+P+ISHL  VKRILKYV+GT+D+G+MY +
Sbjct: 1353 LYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGIMYCH 1412

Query: 241  DTTPTLVGYCDADWVGLADDRKSTSGGCFFLGNNLISWLSKKQNCVSLSTTETEYIVAGS 300
             + P LVGYCDADW G ADDRKSTSGGCF+LGNNLISW SKKQNCVSLST E EYI AGS
Sbjct: 1413 CSNPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGS 1472

Query: 301  GCTQLIWMKNMLHEYGFDQHTITLYSDNMSAIDISKNPVQHSRTKHTDIRHHFIRELVED 360
             C+QL+WMK ML EY  +Q  +TLY DNMSAI+ISKNPVQHSRTKH DIRHH+IR+LV+D
Sbjct: 1473 SCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDD 1532

Query: 361  KVIRLDHIRSNLQLADIFT 380
            KVI L H+ +  Q+ADIFT
Sbjct: 1533 KVITLKHVDTEEQIADIFT 1551

[Close]

BLAST of Cmc01g0015881 vs. ExPASy TrEMBL
Match: Q84VH6 (Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1)

HSP 1 Score: 557.8 bits (1436), Expect = 3.7e-155
Identity = 262/379 (69.13%), Postives = 312/379 (82.32%), Query Frame = 0


Query: 1    MDVKSAFLNGYLNEEVYVAQPKDFVDSEHPKHVYKLNKALYGLKQAPRAWYERLTVYLRG 60
            MDVKSAFLNGYLNEE YV QPK FVD  HP HVY+L KALYGLKQAPRAWYERLT +L  
Sbjct: 1176 MDVKSAFLNGYLNEEAYVEQPKGFVDPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQ 1235

Query: 61   KGYSKGEIDKTLFIHRKSDQLLVAQIYVDDIIFRGFPHDLVNNFINIMESEFEMSMVGEL 120
            +GY KG IDKTLF+ + ++ L++AQIYVDDI+F G  ++++ +F+  M+SEFEMS+VGEL
Sbjct: 1236 QGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGEL 1295

Query: 121  PCFLGFQIKQKNDDIVISQKKYAKNMAKKFGLEQARNKRTPAATHVKLTRDNDGAEVDHK 180
              FLG Q+KQ  D I +SQ KYAKN+ KKFG+E A +KRTPA TH+KL++D  G  VD  
Sbjct: 1296 TYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQS 1355

Query: 181  LYRSIVSNLLYLTASRPDIAYAVGICARYQADPRISHLEAVKRILKYVHGTNDFGMMYSY 240
            LYRS++ +LLYLTASRPDI YAVG+CARYQA+P+ISHL  VKRILKYV+GT+D+G+MY +
Sbjct: 1356 LYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCH 1415

Query: 241  DTTPTLVGYCDADWVGLADDRKSTSGGCFFLGNNLISWLSKKQNCVSLSTTETEYIVAGS 300
             +   LVGYCDADW G ADDRKSTSGGCF+LGNNLISW SKKQNCVSLST E EYI AGS
Sbjct: 1416 CSGSMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGS 1475

Query: 301  GCTQLIWMKNMLHEYGFDQHTITLYSDNMSAIDISKNPVQHSRTKHTDIRHHFIRELVED 360
             C+QL+WMK ML EY  +Q  +TLY DNMSAI+ISKNPVQHSRTKH DIRHH+IRELV+D
Sbjct: 1476 SCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRELVDD 1535

Query: 361  KVIRLDHIRSNLQLADIFT 380
            KVI L+H+ +  Q+ADIFT
Sbjct: 1536 KVITLEHVDTEEQIADIFT 1554

[Close]

BLAST of Cmc01g0015881 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 223.0 bits (567), Expect = 4.2e-58
Identity = 130/361 (36.01%), Postives = 193/361 (53.46%), Query Frame = 0


Query: 1   MDVKSAFLNGYLNEEVYVAQPKDFV----DSEHPKHVYKLNKALYGLKQAPRAWYERLTV 60
           +D+ +AFLNG L+EE+Y+  P  +     DS  P  V  L K++YGLKQA R W+ + +V
Sbjct: 193 LDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSV 252

Query: 61  YLRGKGYSKGEIDKTLFIHRKSDQLLVAQIYVDDIIFRGFPHDLVNNFINIMESEFEMSM 120
            L G G+ +   D T F+   +   L   +YVDDII        V+   + ++S F++  
Sbjct: 253 TLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRD 312

Query: 121 VGELPCFLGFQIKQKNDDIVISQKKYAKNMAKKFGLEQARNKRTPAATHVKLTRDNDGAE 180
           +G L  FLG +I +    I I Q+KYA ++  + GL   +    P    V  +  + G  
Sbjct: 313 LGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDF 372

Query: 181 VDHKLYRSIVSNLLYLTASRPDIAYAVGICARYQADPRISHLEAVKRILKYVHGTNDFGM 240
           VD K YR ++  L+YL  +R DI++AV   +++   PR++H +AV +IL Y+ GT   G+
Sbjct: 373 VDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGL 432

Query: 241 MYSYDTTPTLVGYCDADWVGLADDRKSTSGGCFFLGNNLISWLSKKQNCVSLSTTETEYI 300
            YS      L  + DA +    D R+ST+G C FLG +LISW SKKQ  VS S+ E EY 
Sbjct: 433 FYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYR 492

Query: 301 VAGSGCTQLIWMKNMLHEYGFDQHTIT-LYSDNMSAIDISKNPVQHSRTKHTDIRHHFIR 357
                  +++W+     E        T L+ DN +AI I+ N V H RTKH +   H +R
Sbjct: 493 ALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVR 552

[Close]

BLAST of Cmc01g0015881 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 152.1 bits (383), Expect = 9.0e-37
Identity = 85/223 (38.12%), Postives = 124/223 (55.61%), Query Frame = 0


Query: 86  IYVDDIIFRGFPHDLVNNFINIMESEFEMSMVGELPCFLGFQIKQKNDDIVISQKKYAKN 145
           +YVDDI+  G  + L+N  I  + S F M  +G +  FLG QIK     + +SQ KYA+ 
Sbjct: 5   LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 146 MAKKFGLEQARNKRTPAATHVKLTRDNDGAEV-DHKLYRSIVSNLLYLTASRPDIAYAVG 205
           +    G+   +   TP    +KL      A+  D   +RSIV  L YLT +RPDI+YAV 
Sbjct: 65  ILNNAGMLDCKPMSTPLP--LKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVN 124

Query: 206 ICARYQADPRISHLEAVKRILKYVHGTNDFGMMYSYDTTPTLVGYCDADWVGLADDRKST 265
           I  +   +P ++  + +KR+L+YV GT   G+    ++   +  +CD+DW G    R+ST
Sbjct: 125 IVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRST 184

Query: 266 SGGCFFLGNNLISWLSKKQNCVSLSTTETEYIVAGSGCTQLIW 308
           +G C FLG N+ISW +K+Q  VS S+TETEY        +L W
Sbjct: 185 TGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc01g0015881 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 65.9 bits (159), Expect = 8.5e-11
Identity = 31/88 (35.23%), Postives = 51/88 (57.95%), Query Frame = 0


Query: 190 LYLTASRPDIAYAVGICARYQADPRISHLEAVKRILKYVHGTNDFGMMYSYDTTPTLVGY 249
           +YLT +RPD+ +AV   +++ +  R + ++AV ++L YV GT   G+ YS  +   L  +
Sbjct: 1   MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60

Query: 250 CDADWVGLADDRKSTSGGC-----FFLG 273
            D+DW    D R+S +G C     +FLG
Sbjct: 61  ADSDWASCPDTRRSVTGFCSLVPLWFLG 88

The following BLAST results are available for this feature:

BLAST of Cmc01g0015881 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK23188.1	1.8e-220	96.18	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0066740.1	4.2e-169	80.21	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK27888.1 gag-pol polyprotein [...	[more]
KAA0066405.1	2.5e-161	78.17	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK00880.1 gag-pol polyprotein [...	[more]
AAO73521.1	7.7e-155	68.87	gag-pol polyprotein [Glycine max]	[more]
AAO73527.1	7.7e-155	68.87	gag-pol polyprotein [Glycine max]	[more]

BLAST of Cmc01g0015881 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	5.0e-72	38.62	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	4.2e-71	38.42	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.0e-69	37.85	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P04146	3.6e-62	35.49	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P25600	2.1e-38	31.89	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc01g0015881 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DI97	8.7e-221	96.18	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G...	[more]
A0A5D3DWS6	2.0e-169	80.21	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G...	[more]
A0A5D3BPB5	1.2e-161	78.17	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G...	[more]
Q84VI4	3.7e-155	68.87	Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1	[more]
Q84VH6	3.7e-155	69.13	Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1	[more]

BLAST of Cmc01g0015881 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	4.2e-58	36.01	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	9.0e-37	38.12	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	8.5e-11	35.23	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..162 e-value: 8.7E-40 score: 136.8
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..221
None	No IPR available	PANTHER	PTHR11439:SF351	CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8	coord: 1..221
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 247..379 e-value: 6.32122E-74 score: 224.655
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..349

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0015881.1	Cmc01g0015881.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding