Cmc01g0015821 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0015821
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag-pol polyprotein
Location	CMiso1.1chr01: 13664269 .. 13666401 (+)
RNA-Seq Expression	Cmc01g0015821
Synteny	Cmc01g0015821

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAAAAGTTTACCACCGCATTTTTTTGGCAGAAGCAGTTAACACAACTTGCCATATTCACAACAGAATTACTATTCGATCTGGAACTAATGTGACCTTATATGAGCTATGGAAAGGCAGGAAGCTTAATGTTAAATATTTTCATATCTTCGGAAGTACATGTTATATTCTTGCTGACAGAGAATATCATCAGAAGTGGGATGCAAAGTCAGAACATGGACTATTCCTTGGATATTCCCAGAACAGGAGAGCTTATAGAGTCTTCAACAATCGAACTGAATTGGTTATGGAAACAATCAATGTTGTGGTTGATGATTATAACAATAATGATAAGCAAATTGATGACGAGGAGGATGAAGCATCTGAGGAGACTATAGCTCCAACATCTACACCTATTGTTGTACCCAAAGAGGATACTGAGGTAACTAATATAGAGTTAAGCCCTAATTCTATATCAAAAAGGGCCACTGCTGAAGGGACGTTAACAATTCTTTCATCACATGTCCAGAAAAATCATCCCTTAAGCTCAATTATCGGTGATCCCTCTGCTGGAATTATCGCTAGAAGGAAGGACAAAGTAGATTATCTGAAAATGATAGCTGACTTGTGTTATACTTCAGCTATTGAACCTACATCAGTTGAGGTTGTACTTAAAGATGAATACTGAATAAAGGCCATGCAAGAAGAGTTACTACAGTTCAAGCGTAAAAATGTATGGACTTTGGTTCCTAAACTTGATGAGGCAAACATCATAGGAACCAAGTGGATCTTTAAAAATAAAACCGATGAATCTGGGTGTGTAATAAGGAACAAAGCTCGTTTGGTGGCTCAGGGCTATGCACAGGTAGAAGGTGTTGATTTTGATGAAACCTTTGCACCTGTGGCTAAACTTGAAGCTATTCGCCTGTTGCTCAGTATATCATGTTTCCAAAATTTTAAATTGTATCAAATGGACGTTAAAAGTGCTTTTCTGAATGGATACTTGAATGAAGAAGTCTATGTAGCATAACCTAAAGGGTTTGTTGATTCTGAATTTCCTCAGTATATCTACAAGCTTAATAAAGCTCTATATGGATTAAAGCAAGCACCTAGGGCTTGGTATGAATGTTTAACAATGTATCTGGGTGAGAAAGGATATTCCAGGGAAGAAACTGACAAGACACTGTTTATTAATAGAACAAGCACTCATCTCATTGTAGCTCAAATCTATGTTGATGATATTATCTTTGGTGGATTTCCTAAAACACTTGTTAATAACTTCATTGACACAATGAAATCAGAATTCGAAATGAGCTTAGTAGGCAAATTGTCTTGCTTTCTGGGGTTGCAGATCAAACAGAGAAGTGAATGTATATTTATATCGCAAAAGAAGTATGCCAAGAACATAGTCAAGAATTTTGGTCTAGATCAGTCACAATACAAAAGGACTCCAACTACGACACATGCTAAAATTACCGAGGATATTGTTGGTATCGCAGTAGATCATAAACTGTACAGGAGCATGATTGGGAGCCTCTTATATTTAACAGCAAGCAGACCTGATATTGCCTATGCTGTTGGAATATGTGCTCGGTATCAGTCAGATCCTCGCATCTCTCACTTGAATGCAGTTAAATAAATAATCAAATATGTTCACGGAACAACAAATTTTGAAATACTGTATTCCTATGATACATCTTCTGAACTGGTGGGATATTGTGATACTGACTGGGCTGATTCTGCTGGTGATAGGAAAAGCACCTCTGGTGGATGTTTCTTTCTTGGAAATAATCTTGTTTCATGGTTCAGTAAGAAAAAAAATTGTATATCTCTTTCTACAGCAGAAGCTGAGTATATAGTTGCAGGGATTGAGTTTACTCAATTGATATGGATGAAAAACATGTTGAATGAATATGGGATTATCCAAGATGTTATGACTTTATATTGTGATAATATGAGTGCTATAGATATATCGAAAAATCCAGTCCAGCATAGTCGAACTAAGCACATTGATATAAGACATCATTTTATTAGAGAGCTCATTGAAAATAAGATTATTACATTGCAACACTTTCCCGCGAACTCACAATTGGCAGATACTTTTACTAAACCCCTTGATGCAACCATGTTTGAGCATTTACACGTTCTGTAA

mRNA sequence

ATGCTAAAAGTTTACCACCGCATTTTTTTGGCAGAAGCAGTTAACACAACTTGCCATATTCACAACAGAATTACTATTCGATCTGGAACTAATGTGACCTTATATGAGCTATGGAAAGGCAGGAAGCTTAATGTTAAATATTTTCATATCTTCGGAAGTACATGTTATATTCTTGCTGACAGAGAATATCATCAGAAGTGGGATGCAAAGTCAGAACATGGACTATTCCTTGGATATTCCCAGAACAGGAGAGCTTATAGAGTCTTCAACAATCGAACTGAATTGGTTATGGAAACAATCAATGTTGTGGTTGATGATTATAACAATAATGATAAGCAAATTGATGACGAGGAGGATGAAGCATCTGAGGAGACTATAGCTCCAACATCTACACCTATTGTTGTACCCAAAGAGGATACTGAGGTAACTAATATAGAGTTAAGCCCTAATTCTATATCAAAAAGGGCCACTGCTGAAGGGACGTTAACAATTCTTTCATCACATGTCCAGAAAAATCATCCCTTAAGCTCAATTATCGGTGATCCCTCTGCTGGAATTATCGCTAGAAGGAAGGACAAAGTAGATTATCTGAAAATGATAGCTGACTTGTGTTATACTTCAGCTATTGAACCTACATCAGTTGAGTTACTACAGTTCAAGCGTAAAAATGTATGGACTTTGGTTCCTAAACTTGATGAGGCAAACATCATAGGAACCAAGTGGATCTTTAAAAATAAAACCGATGAATCTGGGTGTGTAATAAGGAACAAAGCTCGTTTGGTGGCTCAGGGCTATGCACAGGTAGAAGGTGTTGATTTTGATGAAACCTTTGCACCTGTGGCTAAACTTGAAGCTATTCGCCTGTTGCTCAGTATATCATGTTTCCAAAATTTTAAATTGTATCAAATGGACGTTAAAAGTGCTTTTCTGAATGGATACTTGAATGAAGAAGTCTATTATATCTACAAGCTTAATAAAGCTCTATATGGATTAAAGCAAGCACCTAGGGCTTGGTATGAATGTTTAACAATGTATCTGGGTGAGAAAGGATATTCCAGGGAAGAAACTGACAAGACACTGTTTATTAATAGAACAAGCACTCATCTCATTGTAGCTCAAATCTATGTTGATGATATTATCTTTGGTGGATTTCCTAAAACACTTGTTAATAACTTCATTGACACAATGAAATCAGAATTCGAAATGAGCTTAGTAGGCAAATTGTCTTGCTTTCTGGGGTTGCAGATCAAACAGAGAAGTGAATGTATATTTATATCGCAAAAGAAGTATGCCAAGAACATAGTCAAGAATTTTGGTCTAGATCAGTCACAATACAAAAGGACTCCAACTACGACACATGCTAAAATTACCGAGGATATTGTTGGTATCGCAGTAGATCATAAACTGTACAGGAGCATGATTGGGAGCCTCTTATATTTAACAGCAAGCAGACCTGATATTGCCTATGCTGTTGGAATATGTGCTCGGAAAAGCACCTCTGGTGGATGTTTCTTTCTTGGAAATAATCTTGTTTCATGGTTCAGTAAGAAAAAAAATTGTATATCTCTTTCTACAGCAGAAGCTGAGTATATAGTTGCAGGGATTGAGTTTACTCAATTGATATGGATGAAAAACATGTTGAATGAATATGGGATTATCCAAGATGTTATGACTTTATATTGTGATAATATGAGTGCTATAGATATATCGAAAAATCCAGTCCAGCATAGTCGAACTAAGCACATTGATATAAGACATCATTTTATTAGAGAGCTCATTGAAAATAAGATTATTACATTGCAACACTTTCCCGCGAACTCACAATTGGCAGATACTTTTACTAAACCCCTTGATGCAACCATGTTTGAGCATTTACACGTTCTGTAA

Coding sequence (CDS)

ATGCTAAAAGTTTACCACCGCATTTTTTTGGCAGAAGCAGTTAACACAACTTGCCATATTCACAACAGAATTACTATTCGATCTGGAACTAATGTGACCTTATATGAGCTATGGAAAGGCAGGAAGCTTAATGTTAAATATTTTCATATCTTCGGAAGTACATGTTATATTCTTGCTGACAGAGAATATCATCAGAAGTGGGATGCAAAGTCAGAACATGGACTATTCCTTGGATATTCCCAGAACAGGAGAGCTTATAGAGTCTTCAACAATCGAACTGAATTGGTTATGGAAACAATCAATGTTGTGGTTGATGATTATAACAATAATGATAAGCAAATTGATGACGAGGAGGATGAAGCATCTGAGGAGACTATAGCTCCAACATCTACACCTATTGTTGTACCCAAAGAGGATACTGAGGTAACTAATATAGAGTTAAGCCCTAATTCTATATCAAAAAGGGCCACTGCTGAAGGGACGTTAACAATTCTTTCATCACATGTCCAGAAAAATCATCCCTTAAGCTCAATTATCGGTGATCCCTCTGCTGGAATTATCGCTAGAAGGAAGGACAAAGTAGATTATCTGAAAATGATAGCTGACTTGTGTTATACTTCAGCTATTGAACCTACATCAGTTGAGTTACTACAGTTCAAGCGTAAAAATGTATGGACTTTGGTTCCTAAACTTGATGAGGCAAACATCATAGGAACCAAGTGGATCTTTAAAAATAAAACCGATGAATCTGGGTGTGTAATAAGGAACAAAGCTCGTTTGGTGGCTCAGGGCTATGCACAGGTAGAAGGTGTTGATTTTGATGAAACCTTTGCACCTGTGGCTAAACTTGAAGCTATTCGCCTGTTGCTCAGTATATCATGTTTCCAAAATTTTAAATTGTATCAAATGGACGTTAAAAGTGCTTTTCTGAATGGATACTTGAATGAAGAAGTCTATTATATCTACAAGCTTAATAAAGCTCTATATGGATTAAAGCAAGCACCTAGGGCTTGGTATGAATGTTTAACAATGTATCTGGGTGAGAAAGGATATTCCAGGGAAGAAACTGACAAGACACTGTTTATTAATAGAACAAGCACTCATCTCATTGTAGCTCAAATCTATGTTGATGATATTATCTTTGGTGGATTTCCTAAAACACTTGTTAATAACTTCATTGACACAATGAAATCAGAATTCGAAATGAGCTTAGTAGGCAAATTGTCTTGCTTTCTGGGGTTGCAGATCAAACAGAGAAGTGAATGTATATTTATATCGCAAAAGAAGTATGCCAAGAACATAGTCAAGAATTTTGGTCTAGATCAGTCACAATACAAAAGGACTCCAACTACGACACATGCTAAAATTACCGAGGATATTGTTGGTATCGCAGTAGATCATAAACTGTACAGGAGCATGATTGGGAGCCTCTTATATTTAACAGCAAGCAGACCTGATATTGCCTATGCTGTTGGAATATGTGCTCGGAAAAGCACCTCTGGTGGATGTTTCTTTCTTGGAAATAATCTTGTTTCATGGTTCAGTAAGAAAAAAAATTGTATATCTCTTTCTACAGCAGAAGCTGAGTATATAGTTGCAGGGATTGAGTTTACTCAATTGATATGGATGAAAAACATGTTGAATGAATATGGGATTATCCAAGATGTTATGACTTTATATTGTGATAATATGAGTGCTATAGATATATCGAAAAATCCAGTCCAGCATAGTCGAACTAAGCACATTGATATAAGACATCATTTTATTAGAGAGCTCATTGAAAATAAGATTATTACATTGCAACACTTTCCCGCGAACTCACAATTGGCAGATACTTTTACTAAACCCCTTGATGCAACCATGTTTGAGCATTTACACGTTCTGTAA

Protein sequence

MLKVYHRIFLAEAVNTTCHIHNRITIRSGTNVTLYELWKGRKLNVKYFHIFGSTCYILADREYHQKWDAKSEHGLFLGYSQNRRAYRVFNNRTELVMETINVVVDDYNNNDKQIDDEEDEASEETIAPTSTPIVVPKEDTEVTNIELSPNSISKRATAEGTLTILSSHVQKNHPLSSIIGDPSAGIIARRKDKVDYLKMIADLCYTSAIEPTSVELLQFKRKNVWTLVPKLDEANIIGTKWIFKNKTDESGCVIRNKARLVAQGYAQVEGVDFDETFAPVAKLEAIRLLLSISCFQNFKLYQMDVKSAFLNGYLNEEVYYIYKLNKALYGLKQAPRAWYECLTMYLGEKGYSREETDKTLFINRTSTHLIVAQIYVDDIIFGGFPKTLVNNFIDTMKSEFEMSLVGKLSCFLGLQIKQRSECIFISQKKYAKNIVKNFGLDQSQYKRTPTTTHAKITEDIVGIAVDHKLYRSMIGSLLYLTASRPDIAYAVGICARKSTSGGCFFLGNNLVSWFSKKKNCISLSTAEAEYIVAGIEFTQLIWMKNMLNEYGIIQDVMTLYCDNMSAIDISKNPVQHSRTKHIDIRHHFIRELIENKIITLQHFPANSQLADTFTKPLDATMFEHLHVL

Homology

[Close]

BLAST of Cmc01g0015821 vs. NCBI nr
Match: TYK23179.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 835.1 bits (2156), Expect = 4.0e-238
Identity = 434/488 (88.93%), Postives = 437/488 (89.55%), Query Frame = 0


Query: 9   FLAEAVNTTCHIHNRITIRSGTNVTLYELWKGRKLNVKYFHIFGSTCYILADREYHQKWD 68
           FLAEAVNTTCHIHNRITIRSGTNVTLYELWKGRKLNVKYFHIFGSTCYILADREYHQKWD
Sbjct: 378 FLAEAVNTTCHIHNRITIRSGTNVTLYELWKGRKLNVKYFHIFGSTCYILADREYHQKWD 437

Query: 69  AKSEHGLFLGYSQNRRAYRVFNNRTELVMETINVVVDDYNNNDKQIDDEEDEASEETIAP 128
           AKSEHGLFLGYSQNRRAYRVFNNRTE+VMETINVVVDDYNNNDKQIDDEEDEASEETIAP
Sbjct: 438 AKSEHGLFLGYSQNRRAYRVFNNRTEMVMETINVVVDDYNNNDKQIDDEEDEASEETIAP 497

Query: 129 TSTPIVVPKEDTEVTNIELSPNSISKRATAEGTLTILSSHVQKNHPLSSIIGDPSAGIIA 188
           TSTPIVVPKEDTE TNIELSP SISKRAT EGTLTILSSHV+KNHPLSSIIGDPSAGIIA
Sbjct: 498 TSTPIVVPKEDTEATNIELSPKSISKRATTEGTLTILSSHVRKNHPLSSIIGDPSAGIIA 557

Query: 189 RRKDKVDYLKMIADLCYTSAIEPTSVELLQFKRKNVWTLVPKLDEANIIGTKWIFKNKTD 248
           RRKDK                     ELLQFKRKNVWTLVPKLDEANIIGTKWIFKNKTD
Sbjct: 558 RRKDKA-----------------MQEELLQFKRKNVWTLVPKLDEANIIGTKWIFKNKTD 617

Query: 249 ESGCVIRNKARLVAQGYAQVEGVDFDETFAPVAKLEAIRLLLSISCFQNFKLYQMDVKSA 308
           ESGCVIRNKARLVAQGYAQVEGVDFDETFAPVAKLEAIRLLL              V S 
Sbjct: 618 ESGCVIRNKARLVAQGYAQVEGVDFDETFAPVAKLEAIRLLLRF------------VDSE 677

Query: 309 FLNGYLNEEVYYIYKLNKALYGLKQAPRAWYECLTMYLGEKGYSREETDKTLFINRTSTH 368
           F          YIYKLNKALYGLKQAPRAWYECLTMYLGEKGYSREETDKTLFINRTSTH
Sbjct: 678 F--------PQYIYKLNKALYGLKQAPRAWYECLTMYLGEKGYSREETDKTLFINRTSTH 737

Query: 369 LIVAQIYVDDIIFGGFPKTLVNNFIDTMKSEFEMSLVGKLSCFLGLQIKQRSECIFISQK 428
           LIVAQIYVDDIIFGGFPKTLVNNFIDT+KSEFEMSLVGKLSCFLGLQIKQRSE IFISQK
Sbjct: 738 LIVAQIYVDDIIFGGFPKTLVNNFIDTIKSEFEMSLVGKLSCFLGLQIKQRSESIFISQK 797

Query: 429 KYAKNIVKNFGLDQSQYKRTPTTTHAKITEDIVGIAVDHKLYRSMIGSLLYLTASRPDIA 488
           KYAKNIVKNFGLDQSQYKRTPTTTHAKITEDIVGIAVDHKLYRSMIGSLLYLTASRPDIA
Sbjct: 798 KYAKNIVKNFGLDQSQYKRTPTTTHAKITEDIVGIAVDHKLYRSMIGSLLYLTASRPDIA 828

Query: 489 YAVGICAR 497
           YAVGICAR
Sbjct: 858 YAVGICAR 828

[Close]

BLAST of Cmc01g0015821 vs. NCBI nr
Match: AAO73529.1 (gag-pol polyprotein [Glycine max])

HSP 1 Score: 731.1 bits (1886), Expect = 8.1e-207
Identity = 381/697 (54.66%), Postives = 473/697 (67.86%), Query Frame = 0


Query: 11   AEAVNTTCHIHNRITIRSGTNVTLYELWKGRKLNVKYFHIFGSTCYILADREYHQKWDAK 70
            AEA+NT C+IHNR+T+R GT  TLYE+WKGRK  VK+FHIFGS CYILADRE  +K D K
Sbjct: 883  AEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPTVKHFHIFGSPCYILADREQRRKMDPK 942

Query: 71   SEHGLFLGYSQNRRAYRVFNNRTELVMETINVVVDDYNNNDKQIDDEEDEASEETIAPTS 130
            S+ G+FLGYS N RAYRVFN+RT  VME+INVVVDD     K+  +E+   S + +A T+
Sbjct: 943  SDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLTPARKKDVEEDVRTSGDNVADTA 1002

Query: 131  TPIVVPKEDTEVTNIELSPNSISKRATAEGTLTILSSHVQKNHPLSSIIGDPSAGIIARR 190
                   E+++    E + N   KR          S  +QK HP   IIGDP+ G+  R 
Sbjct: 1003 KS-AENAENSDSATDEPNINQPDKRP---------SIRIQKMHPKELIIGDPNRGVTTRS 1062

Query: 191  KDKVDYLKMIADLCYTSAIEPTSV---------------ELLQFKRKNVWTLVPKLDEAN 250
            ++    ++++++ C+ S IEP +V               EL QFKR  VW LVP+ +  N
Sbjct: 1063 RE----IEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTN 1122

Query: 251  IIGTKWIFKNKTDESGCVIRNKARLVAQGYAQVEGVDFDETFAPVAKLEAIRLLLSISCF 310
            +IGTKWIFKNKT+E G + RNKARLVAQGY Q+EGVDFDETFAPVA+LE+IRLLL ++C 
Sbjct: 1123 VIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACI 1182

Query: 311  QNFKLYQMDVKSAFLNGYLNEEVY--------------YIYKLNKALYGLKQAPRAWYEC 370
              FKLYQMDVKSAFLNGYLNEE Y              ++Y+L KALYGLKQAPRAWYE 
Sbjct: 1183 LKFKLYQMDVKSAFLNGYLNEEAYVEQPKGFVDPTHPDHVYRLKKALYGLKQAPRAWYER 1242

Query: 371  LTMYLGEKGYSREETDKTLFINRTSTHLIVAQIYVDDIIFGGFPKTLVNNFIDTMKSEFE 430
            LT +L ++GY +   DKTLF+ + + +L++AQIYVDDI+FGG    ++ +F+  M+SEFE
Sbjct: 1243 LTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFE 1302

Query: 431  MSLVGKLSCFLGLQIKQRSECIFISQKKYAKNIVKNFGLDQSQYKRTPTTTHAKITEDIV 490
            MSLVG+L+ FLGLQ+KQ  + IF+SQ KYAKNIVK FG++ + +KRTP  TH K+++D  
Sbjct: 1303 MSLVGELTYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEA 1362

Query: 491  GIAVDHKLYRSMIGSLLYLTASRPDIAYAVGICA-------------------------- 550
            G +VD  LYRSMIGSLLYLTASRPDI YAVG+CA                          
Sbjct: 1363 GTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSD 1422

Query: 551  ---------------------------RKSTSGGCFFLGNNLVSWFSKKKNCISLSTAEA 610
                                       RKSTSGGCF+LGNNL+SWFSKK+NC+SLSTAEA
Sbjct: 1423 YGIMYCHCSGSMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEA 1482

Query: 611  EYIVAGIEFTQLIWMKNMLNEYGIIQDVMTLYCDNMSAIDISKNPVQHSRTKHIDIRHHF 626
            EYI AG   +QL+WMK ML EY + QDVMTLYCDNMSAI+ISKNPVQHSRTKHIDIRHH+
Sbjct: 1483 EYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHY 1542

[Close]

BLAST of Cmc01g0015821 vs. NCBI nr
Match: AAO73521.1 (gag-pol polyprotein [Glycine max])

HSP 1 Score: 729.9 bits (1883), Expect = 1.8e-206
Identity = 379/697 (54.38%), Postives = 477/697 (68.44%), Query Frame = 0


Query: 11   AEAVNTTCHIHNRITIRSGTNVTLYELWKGRKLNVKYFHIFGSTCYILADREYHQKWDAK 70
            AEA+NT C+IHNR+T+R GT  TLYE+WKGRK +VK+FHIFGS CYILADRE  +K D K
Sbjct: 880  AEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPSVKHFHIFGSPCYILADREQRRKMDPK 939

Query: 71   SEHGLFLGYSQNRRAYRVFNNRTELVMETINVVVDDYNNNDKQIDDEEDEASEETIAPTS 130
            S+ G+FLGYS N RAYRVFN+RT  VME+INVVVDD +   K+  +E+   S + +A  +
Sbjct: 940  SDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLSPARKKDVEEDVRTSGDNVADAA 999

Query: 131  TPIVVPKEDTEVTNIELSPNSISKRATAEGTLTILSSHVQKNHPLSSIIGDPSAGIIARR 190
                   E+++    E + N   KR+         S+ +QK HP   IIGDP+ G+  R 
Sbjct: 1000 KS-GENAENSDSATDESNINQPDKRS---------STRIQKMHPKELIIGDPNRGVTTRS 1059

Query: 191  KDKVDYLKMIADLCYTSAIEPTSV---------------ELLQFKRKNVWTLVPKLDEAN 250
            ++    ++++++ C+ S IEP +V               EL QFKR  VW LVP+ +  N
Sbjct: 1060 RE----VEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTN 1119

Query: 251  IIGTKWIFKNKTDESGCVIRNKARLVAQGYAQVEGVDFDETFAPVAKLEAIRLLLSISCF 310
            +IGTKWIFKNKT+E G + RNKARLVAQGY Q+EGVDFDETFAPVA+LE+IRLLL ++C 
Sbjct: 1120 VIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACI 1179

Query: 311  QNFKLYQMDVKSAFLNGYLNEEVY--------------YIYKLNKALYGLKQAPRAWYEC 370
              FKLYQMDVKSAFLNGYLNEEVY              ++Y+L KALYGLKQAPRAWYE 
Sbjct: 1180 LKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYER 1239

Query: 371  LTMYLGEKGYSREETDKTLFINRTSTHLIVAQIYVDDIIFGGFPKTLVNNFIDTMKSEFE 430
            LT +L ++GY +   DKTLF+ + + +L++AQIYVDDI+FGG    ++ +F+  M+SEFE
Sbjct: 1240 LTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFE 1299

Query: 431  MSLVGKLSCFLGLQIKQRSECIFISQKKYAKNIVKNFGLDQSQYKRTPTTTHAKITEDIV 490
            MSLVG+L+ FLGLQ+KQ  + IF+SQ +YAKNIVK FG++ + +KRTP  TH K+++D  
Sbjct: 1300 MSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEA 1359

Query: 491  GIAVDHKLYRSMIGSLLYLTASRPDIAYAVGICA-------------------------- 550
            G +VD  LYRSMIGSLLYLTASRPDI YAVG+CA                          
Sbjct: 1360 GTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSD 1419

Query: 551  ---------------------------RKSTSGGCFFLGNNLVSWFSKKKNCISLSTAEA 610
                                       RKSTSGGCF+LGNNL+SWFSKK+NC+SLSTAEA
Sbjct: 1420 YGIMYCHCSNPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEA 1479

Query: 611  EYIVAGIEFTQLIWMKNMLNEYGIIQDVMTLYCDNMSAIDISKNPVQHSRTKHIDIRHHF 626
            EYI AG   +QL+WMK ML EY + QDVMTLYCDNMSAI+ISKNPVQHSRTKHIDIRHH+
Sbjct: 1480 EYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHY 1539

[Close]

BLAST of Cmc01g0015821 vs. NCBI nr
Match: AAO73523.1 (gag-pol polyprotein [Glycine max])

HSP 1 Score: 729.2 bits (1881), Expect = 3.1e-206
Identity = 379/697 (54.38%), Postives = 477/697 (68.44%), Query Frame = 0


Query: 11   AEAVNTTCHIHNRITIRSGTNVTLYELWKGRKLNVKYFHIFGSTCYILADREYHQKWDAK 70
            AEA+NT C+IHNR+T+R GT  TLYE+WKGRK +VK+FHIFGS CYILADRE  +K D K
Sbjct: 882  AEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPSVKHFHIFGSPCYILADREQRRKMDPK 941

Query: 71   SEHGLFLGYSQNRRAYRVFNNRTELVMETINVVVDDYNNNDKQIDDEEDEASEETIAPTS 130
            S+ G+FLGYS N RAYRVFN+RT  VME+INVVVDD +   K+  +E+   S + +A  +
Sbjct: 942  SDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLSPARKKDVEEDVRTSGDNVADAA 1001

Query: 131  TPIVVPKEDTEVTNIELSPNSISKRATAEGTLTILSSHVQKNHPLSSIIGDPSAGIIARR 190
                   E+++    E + N   KR+         S+ +QK HP   IIGDP+ G+  R 
Sbjct: 1002 KS-GENAENSDSATDESNINQPDKRS---------STRIQKMHPKELIIGDPNRGVTTRS 1061

Query: 191  KDKVDYLKMIADLCYTSAIEPTSV---------------ELLQFKRKNVWTLVPKLDEAN 250
            ++    ++++++ C+ S IEP +V               EL QFKR  VW LVP+ +  N
Sbjct: 1062 RE----VEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTN 1121

Query: 251  IIGTKWIFKNKTDESGCVIRNKARLVAQGYAQVEGVDFDETFAPVAKLEAIRLLLSISCF 310
            +IGTKWIFKNKT+E G + RNKARLVAQGY Q+EGVDFDETFAPVA+LE+IRLLL ++C 
Sbjct: 1122 VIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACI 1181

Query: 311  QNFKLYQMDVKSAFLNGYLNEEVY--------------YIYKLNKALYGLKQAPRAWYEC 370
              FKLYQMDVKSAFLNGYLNEEVY              ++Y+L KALYGLKQAPRAWYE 
Sbjct: 1182 LKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYER 1241

Query: 371  LTMYLGEKGYSREETDKTLFINRTSTHLIVAQIYVDDIIFGGFPKTLVNNFIDTMKSEFE 430
            LT +L ++GY +   DKTLF+ + + +L++AQIYVDDI+FGG    ++ +F+  M+SEFE
Sbjct: 1242 LTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFE 1301

Query: 431  MSLVGKLSCFLGLQIKQRSECIFISQKKYAKNIVKNFGLDQSQYKRTPTTTHAKITEDIV 490
            MSLVG+L+ FLGLQ+KQ  + IF+SQ +YAKNIVK FG++ + +KRTP  TH K+++D  
Sbjct: 1302 MSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEA 1361

Query: 491  GIAVDHKLYRSMIGSLLYLTASRPDIAYAVGICA-------------------------- 550
            G +VD K YRSMIGSLLYLTASRPDI YAVG+CA                          
Sbjct: 1362 GTSVDQKPYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSD 1421

Query: 551  ---------------------------RKSTSGGCFFLGNNLVSWFSKKKNCISLSTAEA 610
                                       RKSTSGGCF+LGNNL+SWFSKK+NC+SLSTAEA
Sbjct: 1422 YGIMYCHCSSSMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEA 1481

Query: 611  EYIVAGIEFTQLIWMKNMLNEYGIIQDVMTLYCDNMSAIDISKNPVQHSRTKHIDIRHHF 626
            EYI AG   +QL+WMK ML EY + QDVMTLYCDNMSAI+ISKNPVQHSRTKHIDIRHH+
Sbjct: 1482 EYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHY 1541

[Close]

BLAST of Cmc01g0015821 vs. NCBI nr
Match: MCH79363.1 (gag-pol polyprotein [Trifolium medium])

HSP 1 Score: 729.2 bits (1881), Expect = 3.1e-206
Identity = 380/698 (54.44%), Postives = 476/698 (68.19%), Query Frame = 0


Query: 11   AEAVNTTCHIHNRITIRSGTNVTLYELWKGRKLNVKYFHIFGSTCYILADREYHQKWDAK 70
            AEA+NT C+IHNR+T+RSGT+ TLYELWKGRK  VK+FH+FGS CYILADRE  +K D K
Sbjct: 613  AEAMNTACYIHNRVTLRSGTSTTLYELWKGRKPTVKHFHVFGSKCYILADREPRRKLDPK 672

Query: 71   SEHGLFLGYSQNRRAYRVFNNRTELVMETINVVVDDYNNNDKQIDDEED-EASEETIAPT 130
            SE G+FLGYS N RAYRV N+RT+++ME+INVVVDD   + K  D E D   S++ +  T
Sbjct: 673  SEEGIFLGYSTNSRAYRVMNSRTKVIMESINVVVDD-TTSAKTYDVEPDVTTSDDPVEET 732

Query: 131  STPIVVPKEDTEVTNIELSPNSISKRATAEGTLTILSSHVQKNHPLSSIIGDPSAGIIAR 190
                  P+ D E +  +L+P  ++K         + S  +QKNHP   IIG P+ GI  R
Sbjct: 733  E-----PESDDEASTSDLAP--VNK---------VPSIRIQKNHPKDLIIGSPTQGITTR 792

Query: 191  RKDKVDYLKMIADLCYTSAIEPTSV---------------ELLQFKRKNVWTLVPKLDEA 250
            R +     + I++ C+ S IEP +V               EL QFKR  VW LVP+    
Sbjct: 793  RSN-----ENISNACFVSKIEPKNVKEALTDEFWIEAMQEELTQFKRSEVWDLVPRPCNV 852

Query: 251  NIIGTKWIFKNKTDESGCVIRNKARLVAQGYAQVEGVDFDETFAPVAKLEAIRLLLSISC 310
            N+IGTKW+++NK+DE+G V RNKARLVAQGY+QVEG+DFDETFAPVA+LE+IRLL+ ++C
Sbjct: 853  NVIGTKWVYRNKSDENGVVTRNKARLVAQGYSQVEGLDFDETFAPVARLESIRLLIGVAC 912

Query: 311  FQNFKLYQMDVKSAFLNGYLNEEVY--------------YIYKLNKALYGLKQAPRAWYE 370
               FKLYQMDVKSAFLNGYL+EEVY              ++YKL KALYGLKQAPRAWYE
Sbjct: 913  ILRFKLYQMDVKSAFLNGYLHEEVYVEQPKGFIDPSYPDHVYKLKKALYGLKQAPRAWYE 972

Query: 371  CLTMYLGEKGYSREETDKTLFINRTSTHLIVAQIYVDDIIFGGFPKTLVNNFIDTMKSEF 430
             LT++L  +GY +   DKTLF+   + +L++AQIYVDDI+FGG    +V +F+  M+SEF
Sbjct: 973  RLTIFLVSQGYRKGGNDKTLFVKEKNGNLMIAQIYVDDIVFGGMSNEMVQHFVQQMQSEF 1032

Query: 431  EMSLVGKLSCFLGLQIKQRSECIFISQKKYAKNIVKNFGLDQSQYKRTPTTTHAKITEDI 490
            EMSLVG+L+ FLGLQ+KQ  + IF+SQ KYAKNIVK FG++ + YKRTP  TH K+T D 
Sbjct: 1033 EMSLVGELTYFLGLQVKQMEDTIFVSQSKYAKNIVKKFGMESAAYKRTPAATHLKLTRDE 1092

Query: 491  VGIAVDHKLYRSMIGSLLYLTASRPDIAYAVGICA------------------------- 550
             G+ VD  +Y+SMIGSLLYLTASRPDI +AVG+CA                         
Sbjct: 1093 KGVNVDQSMYKSMIGSLLYLTASRPDITFAVGVCARYQAEPKMSHLIQVKRILKYINGTS 1152

Query: 551  ----------------------------RKSTSGGCFFLGNNLVSWFSKKKNCISLSTAE 610
                                        RKSTSGGCFFLGNNL+SWFSKK+NC+SLSTAE
Sbjct: 1153 DYGILYSQTKNSNLVGYCDADWAGSADDRKSTSGGCFFLGNNLISWFSKKQNCVSLSTAE 1212

Query: 611  AEYIVAGIEFTQLIWMKNMLNEYGIIQDVMTLYCDNMSAIDISKNPVQHSRTKHIDIRHH 626
            AEYI AG   +QL+WMK ML +Y + QDVMTL+CDN+SAI+ISKNP+QHSRTKHIDIRHH
Sbjct: 1213 AEYIAAGSSCSQLLWMKQMLKDYNVPQDVMTLFCDNLSAINISKNPIQHSRTKHIDIRHH 1272

[Close]

BLAST of Cmc01g0015821 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.1e-76
Identity = 197/714 (27.59%), Postives = 336/714 (47.06%), Query Frame = 0


Query: 9    FLAEAVNTTCHIHNRITIRSGTNVTLYELWKGRKLNVKYFHIFGSTCYILADREYHQKWD 68
            F  EAV T C++ NR             +W  ++++  +  +FG   +    +E   K D
Sbjct: 609  FWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLD 668

Query: 69   AKSEHGLFLGYSQNRRAYRVFNNRTELVMETINVVVDDYNNNDKQIDDEEDEASEETIAP 128
             KS   +F+GY      YR+++   + V+ + +VV   +  ++ +   +  E  +  I P
Sbjct: 669  DKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVV---FRESEVRTAADMSEKVKNGIIP 728

Query: 129  TSTPIVVPKEDTEVTNIELSPNSISKRATAEGTLTILSSHVQK-----NHPLSS------ 188
                + +P      T+ E + + +S++    G +      + +      HP         
Sbjct: 729  NF--VTIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQGEQLDEGVEEVEHPTQGEEQHQP 788

Query: 189  IIGDPSAGIIARRKDKVDYLKMIADLCYTSAIEPTS------------VELLQFKRKNVW 248
            +       + +RR    +Y+ +  D    S  E  S             E+   ++   +
Sbjct: 789  LRRSERPRVESRRYPSTEYVLISDDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTY 848

Query: 249  TLVPKLDEANIIGTKWIFKNKTDESGCVIRNKARLVAQGYAQVEGVDFDETFAPVAKLEA 308
             LV        +  KW+FK K D    ++R KARLV +G+ Q +G+DFDE F+PV K+ +
Sbjct: 849  KLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTS 908

Query: 309  IRLLLSISCFQNFKLYQMDVKSAFLNGYLNEEVY--------------YIYKLNKALYGL 368
            IR +LS++   + ++ Q+DVK+AFL+G L EE+Y               + KLNK+LYGL
Sbjct: 909  IRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGL 968

Query: 369  KQAPRAWYECLTMYLGEKGYSREETDKTLFINRTS-THLIVAQIYVDDIIFGGFPKTLVN 428
            KQAPR WY     ++  + Y +  +D  ++  R S  + I+  +YVDD++  G  K L+ 
Sbjct: 969  KQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIA 1028

Query: 429  NFIDTMKSEFEMSLVGKLSCFLGLQI--KQRSECIFISQKKYAKNIVKNFGLDQSQYKRT 488
                 +   F+M  +G     LG++I  ++ S  +++SQ+KY + +++ F +  ++   T
Sbjct: 1029 KLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVST 1088

Query: 489  PTTTHAKITEDIVGIAVDHK------LYRSMIGSLLY-LTASRPDIAYAVGICA------ 548
            P   H K+++ +    V+ K       Y S +GSL+Y +  +RPDIA+AVG+ +      
Sbjct: 1089 PLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENP 1148

Query: 549  ----------------------------------------------RKSTSGGCFFLGNN 608
                                                          RKS++G  F     
Sbjct: 1149 GKEHWEAVKWILRYLRGTTGDCLCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGG 1208

Query: 609  LVSWFSKKKNCISLSTAEAEYIVAGIEFTQLIWMKNMLNEYGIIQDVMTLYCDNMSAIDI 624
             +SW SK + C++LST EAEYI A     ++IW+K  L E G+ Q    +YCD+ SAID+
Sbjct: 1209 AISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYVVYCDSQSAIDL 1268

[Close]

BLAST of Cmc01g0015821 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 268.5 bits (685), Expect = 1.9e-70
Identity = 161/489 (32.92%), Postives = 252/489 (51.53%), Query Frame = 0


Query: 210  EPTSVELLQFKRKNVWTLVPKLDEANIIGTKWIFKNKTDESGCVIRNKARLVAQGYAQVE 269
            E  + EL   K  N WT+  + +  NI+ ++W+F  K +E G  IR KARLVA+G+ Q  
Sbjct: 908  EAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKY 967

Query: 270  GVDFDETFAPVAKLEAIRLLLSISCFQNFKLYQMDVKSAFLNGYLNEEVYY--------- 329
             +D++ETFAPVA++ + R +LS+    N K++QMDVK+AFLNG L EE+Y          
Sbjct: 968  QIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGISCN 1027

Query: 330  ---IYKLNKALYGLKQAPRAWYECLTMYLGEKGYSREETDKTLFI--NRTSTHLIVAQIY 389
               + KLNKA+YGLKQA R W+E     L E  +     D+ ++I         I   +Y
Sbjct: 1028 SDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLY 1087

Query: 390  VDDIIFGGFPKTLVNNFIDTMKSEFEMSLVGKLSCFLGLQIKQRSECIFISQKKYAKNIV 449
            VDD++      T +NNF   +  +F M+ + ++  F+G++I+ + + I++SQ  Y K I+
Sbjct: 1088 VDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKIL 1147

Query: 450  KNFGLDQSQYKRTPTTTHAKITEDIVGIAVD-HKLYRSMIGSLLY-LTASRPDIAYAVGI 509
              F ++      TP    +KI  +++    D +   RS+IG L+Y +  +RPD+  AV I
Sbjct: 1148 SKFNMENCNAVSTPLP--SKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNI 1207

Query: 510  CA-------------------------------------------------------RKS 569
             +                                                       RKS
Sbjct: 1208 LSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKS 1267

Query: 570  TSGGCFFLGN-NLVSWFSKKKNCISLSTAEAEYIVAGIEFTQLIWMKNMLNEYGI-IQDV 626
            T+G  F + + NL+ W +K++N ++ S+ EAEY+       + +W+K +L    I +++ 
Sbjct: 1268 TTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENP 1327

[Close]

BLAST of Cmc01g0015821 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.3e-66
Identity = 157/471 (33.33%), Postives = 242/471 (51.38%), Query Frame = 0


Query: 223  NVWTLV-PKLDEANIIGTKWIFKNKTDESGCVIRNKARLVAQGYAQVEGVDFDETFAPVA 282
            + W LV P      I+G +WIF  K +  G + R KARLVA+GY Q  G+D+ ETF+PV 
Sbjct: 983  HTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVI 1042

Query: 283  KLEAIRLLLSISCFQNFKLYQMDVKSAFLNGYLNEEVY--------------YIYKLNKA 342
            K  +IR++L ++  +++ + Q+DV +AFL G L ++VY              Y+ KL KA
Sbjct: 1043 KSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKA 1102

Query: 343  LYGLKQAPRAWYECLTMYLGEKGYSREETDKTLFINRTSTHLIVAQIYVDDIIFGGFPKT 402
            LYGLKQAPRAWY  L  YL   G+    +D +LF+ +    ++   +YVDDI+  G   T
Sbjct: 1103 LYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPT 1162

Query: 403  LVNNFIDTMKSEFEMSLVGKLSCFLGLQIKQRSECIFISQKKYAKNIVKNFGLDQSQYKR 462
            L++N +D +   F +    +L  FLG++ K+    + +SQ++Y  +++    +  ++   
Sbjct: 1163 LLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVT 1222

Query: 463  TPTTTHAKITEDIVGIAVDHKLYRSMIGSLLYLTASRPDIAYAV---------------- 522
            TP     K++        D   YR ++GSL YL  +RPDI+YAV                
Sbjct: 1223 TPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQ 1282

Query: 523  ---------------GICARK----------------------STSGGCFFLGNNLVSWF 582
                           GI  +K                      ST+G   +LG++ +SW 
Sbjct: 1283 ALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWS 1342

Query: 583  SKKKNCISLSTAEAEYIVAGIEFTQLIWMKNMLNEYGI-IQDVMTLYCDNMSAIDISKNP 625
            SKK+  +  S+ EAEY       +++ W+ ++L E GI +     +YCDN+ A  +  NP
Sbjct: 1343 SKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANP 1402

[Close]

BLAST of Cmc01g0015821 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 5.0e-66
Identity = 155/471 (32.91%), Postives = 240/471 (50.96%), Query Frame = 0


Query: 223  NVWTLV-PKLDEANIIGTKWIFKNKTDESGCVIRNKARLVAQGYAQVEGVDFDETFAPVA 282
            + W LV P      I+G +WIF  K +  G + R KARLVA+GY Q  G+D+ ETF+PV 
Sbjct: 966  HTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVI 1025

Query: 283  KLEAIRLLLSISCFQNFKLYQMDVKSAFLNGYLNEEVY--------------YIYKLNKA 342
            K  +IR++L ++  +++ + Q+DV +AFL G L +EVY              Y+ +L KA
Sbjct: 1026 KSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKA 1085

Query: 343  LYGLKQAPRAWYECLTMYLGEKGYSREETDKTLFINRTSTHLIVAQIYVDDIIFGGFPKT 402
            +YGLKQAPRAWY  L  YL   G+    +D +LF+ +    +I   +YVDDI+  G    
Sbjct: 1086 IYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTV 1145

Query: 403  LVNNFIDTMKSEFEMSLVGKLSCFLGLQIKQRSECIFISQKKYAKNIVKNFGLDQSQYKR 462
            L+ + +D +   F +     L  FLG++ K+  + + +SQ++Y  +++    +  ++   
Sbjct: 1146 LLKHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVA 1205

Query: 463  TPTTTHAKITEDIVGIAVDHKLYRSMIGSLLYLTASRPDIAYAV---------------- 522
            TP  T  K+T        D   YR ++GSL YL  +RPD++YAV                
Sbjct: 1206 TPMATSPKLTLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWN 1265

Query: 523  ---------------GICARK----------------------STSGGCFFLGNNLVSWF 582
                           GI  +K                      ST+G   +LG++ +SW 
Sbjct: 1266 ALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWS 1325

Query: 583  SKKKNCISLSTAEAEYIVAGIEFTQLIWMKNMLNEYGI-IQDVMTLYCDNMSAIDISKNP 625
            SKK+  +  S+ EAEY       ++L W+ ++L E GI +     +YCDN+ A  +  NP
Sbjct: 1326 SKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANP 1385

[Close]

BLAST of Cmc01g0015821 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.0e-19
Identity = 67/223 (30.04%), Postives = 99/223 (44.39%), Query Frame = 0


Query: 374 IYVDDIIFGGFPKTLVNNFIDTMKSEFEMSLVGKLSCFLGLQIKQRSECIFISQKKYAKN 433
           +YVDDI+  G   TL+N  I  + S F M  +G +  FLG+QIK     +F+SQ KYA+ 
Sbjct: 5   LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 434 IVKNFGLDQSQYKRTPTTTHAKITEDI-VGIAVDHKLYRSMIGSLLYLTASRPDIAYAVG 493
           I+ N G+   +   TP     K+   +      D   +RS++G+L YLT +RPDI+YAV 
Sbjct: 65  ILNNAGMLDCKPMSTPLP--LKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVN 124

Query: 494 I-----------------------------------------------------CARKST 543
           I                                                       R+ST
Sbjct: 125 IVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRST 184

[Close]

BLAST of Cmc01g0015821 vs. ExPASy TrEMBL
Match: A0A5D3DIW3 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G002070 PE=4 SV=1)

HSP 1 Score: 835.1 bits (2156), Expect = 1.9e-238
Identity = 434/488 (88.93%), Postives = 437/488 (89.55%), Query Frame = 0


Query: 9   FLAEAVNTTCHIHNRITIRSGTNVTLYELWKGRKLNVKYFHIFGSTCYILADREYHQKWD 68
           FLAEAVNTTCHIHNRITIRSGTNVTLYELWKGRKLNVKYFHIFGSTCYILADREYHQKWD
Sbjct: 378 FLAEAVNTTCHIHNRITIRSGTNVTLYELWKGRKLNVKYFHIFGSTCYILADREYHQKWD 437

Query: 69  AKSEHGLFLGYSQNRRAYRVFNNRTELVMETINVVVDDYNNNDKQIDDEEDEASEETIAP 128
           AKSEHGLFLGYSQNRRAYRVFNNRTE+VMETINVVVDDYNNNDKQIDDEEDEASEETIAP
Sbjct: 438 AKSEHGLFLGYSQNRRAYRVFNNRTEMVMETINVVVDDYNNNDKQIDDEEDEASEETIAP 497

Query: 129 TSTPIVVPKEDTEVTNIELSPNSISKRATAEGTLTILSSHVQKNHPLSSIIGDPSAGIIA 188
           TSTPIVVPKEDTE TNIELSP SISKRAT EGTLTILSSHV+KNHPLSSIIGDPSAGIIA
Sbjct: 498 TSTPIVVPKEDTEATNIELSPKSISKRATTEGTLTILSSHVRKNHPLSSIIGDPSAGIIA 557

Query: 189 RRKDKVDYLKMIADLCYTSAIEPTSVELLQFKRKNVWTLVPKLDEANIIGTKWIFKNKTD 248
           RRKDK                     ELLQFKRKNVWTLVPKLDEANIIGTKWIFKNKTD
Sbjct: 558 RRKDKA-----------------MQEELLQFKRKNVWTLVPKLDEANIIGTKWIFKNKTD 617

Query: 249 ESGCVIRNKARLVAQGYAQVEGVDFDETFAPVAKLEAIRLLLSISCFQNFKLYQMDVKSA 308
           ESGCVIRNKARLVAQGYAQVEGVDFDETFAPVAKLEAIRLLL              V S 
Sbjct: 618 ESGCVIRNKARLVAQGYAQVEGVDFDETFAPVAKLEAIRLLLRF------------VDSE 677

Query: 309 FLNGYLNEEVYYIYKLNKALYGLKQAPRAWYECLTMYLGEKGYSREETDKTLFINRTSTH 368
           F          YIYKLNKALYGLKQAPRAWYECLTMYLGEKGYSREETDKTLFINRTSTH
Sbjct: 678 F--------PQYIYKLNKALYGLKQAPRAWYECLTMYLGEKGYSREETDKTLFINRTSTH 737

Query: 369 LIVAQIYVDDIIFGGFPKTLVNNFIDTMKSEFEMSLVGKLSCFLGLQIKQRSECIFISQK 428
           LIVAQIYVDDIIFGGFPKTLVNNFIDT+KSEFEMSLVGKLSCFLGLQIKQRSE IFISQK
Sbjct: 738 LIVAQIYVDDIIFGGFPKTLVNNFIDTIKSEFEMSLVGKLSCFLGLQIKQRSESIFISQK 797

Query: 429 KYAKNIVKNFGLDQSQYKRTPTTTHAKITEDIVGIAVDHKLYRSMIGSLLYLTASRPDIA 488
           KYAKNIVKNFGLDQSQYKRTPTTTHAKITEDIVGIAVDHKLYRSMIGSLLYLTASRPDIA
Sbjct: 798 KYAKNIVKNFGLDQSQYKRTPTTTHAKITEDIVGIAVDHKLYRSMIGSLLYLTASRPDIA 828

Query: 489 YAVGICAR 497
           YAVGICAR
Sbjct: 858 YAVGICAR 828

[Close]

BLAST of Cmc01g0015821 vs. ExPASy TrEMBL
Match: Q84VH6 (Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1)

HSP 1 Score: 731.1 bits (1886), Expect = 3.9e-207
Identity = 381/697 (54.66%), Postives = 473/697 (67.86%), Query Frame = 0


Query: 11   AEAVNTTCHIHNRITIRSGTNVTLYELWKGRKLNVKYFHIFGSTCYILADREYHQKWDAK 70
            AEA+NT C+IHNR+T+R GT  TLYE+WKGRK  VK+FHIFGS CYILADRE  +K D K
Sbjct: 883  AEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPTVKHFHIFGSPCYILADREQRRKMDPK 942

Query: 71   SEHGLFLGYSQNRRAYRVFNNRTELVMETINVVVDDYNNNDKQIDDEEDEASEETIAPTS 130
            S+ G+FLGYS N RAYRVFN+RT  VME+INVVVDD     K+  +E+   S + +A T+
Sbjct: 943  SDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLTPARKKDVEEDVRTSGDNVADTA 1002

Query: 131  TPIVVPKEDTEVTNIELSPNSISKRATAEGTLTILSSHVQKNHPLSSIIGDPSAGIIARR 190
                   E+++    E + N   KR          S  +QK HP   IIGDP+ G+  R 
Sbjct: 1003 KS-AENAENSDSATDEPNINQPDKRP---------SIRIQKMHPKELIIGDPNRGVTTRS 1062

Query: 191  KDKVDYLKMIADLCYTSAIEPTSV---------------ELLQFKRKNVWTLVPKLDEAN 250
            ++    ++++++ C+ S IEP +V               EL QFKR  VW LVP+ +  N
Sbjct: 1063 RE----IEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTN 1122

Query: 251  IIGTKWIFKNKTDESGCVIRNKARLVAQGYAQVEGVDFDETFAPVAKLEAIRLLLSISCF 310
            +IGTKWIFKNKT+E G + RNKARLVAQGY Q+EGVDFDETFAPVA+LE+IRLLL ++C 
Sbjct: 1123 VIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACI 1182

Query: 311  QNFKLYQMDVKSAFLNGYLNEEVY--------------YIYKLNKALYGLKQAPRAWYEC 370
              FKLYQMDVKSAFLNGYLNEE Y              ++Y+L KALYGLKQAPRAWYE 
Sbjct: 1183 LKFKLYQMDVKSAFLNGYLNEEAYVEQPKGFVDPTHPDHVYRLKKALYGLKQAPRAWYER 1242

Query: 371  LTMYLGEKGYSREETDKTLFINRTSTHLIVAQIYVDDIIFGGFPKTLVNNFIDTMKSEFE 430
            LT +L ++GY +   DKTLF+ + + +L++AQIYVDDI+FGG    ++ +F+  M+SEFE
Sbjct: 1243 LTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFE 1302

Query: 431  MSLVGKLSCFLGLQIKQRSECIFISQKKYAKNIVKNFGLDQSQYKRTPTTTHAKITEDIV 490
            MSLVG+L+ FLGLQ+KQ  + IF+SQ KYAKNIVK FG++ + +KRTP  TH K+++D  
Sbjct: 1303 MSLVGELTYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEA 1362

Query: 491  GIAVDHKLYRSMIGSLLYLTASRPDIAYAVGICA-------------------------- 550
            G +VD  LYRSMIGSLLYLTASRPDI YAVG+CA                          
Sbjct: 1363 GTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSD 1422

Query: 551  ---------------------------RKSTSGGCFFLGNNLVSWFSKKKNCISLSTAEA 610
                                       RKSTSGGCF+LGNNL+SWFSKK+NC+SLSTAEA
Sbjct: 1423 YGIMYCHCSGSMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEA 1482

Query: 611  EYIVAGIEFTQLIWMKNMLNEYGIIQDVMTLYCDNMSAIDISKNPVQHSRTKHIDIRHHF 626
            EYI AG   +QL+WMK ML EY + QDVMTLYCDNMSAI+ISKNPVQHSRTKHIDIRHH+
Sbjct: 1483 EYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHY 1542

[Close]

BLAST of Cmc01g0015821 vs. ExPASy TrEMBL
Match: Q84VI4 (Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1)

HSP 1 Score: 729.9 bits (1883), Expect = 8.7e-207
Identity = 379/697 (54.38%), Postives = 477/697 (68.44%), Query Frame = 0


Query: 11   AEAVNTTCHIHNRITIRSGTNVTLYELWKGRKLNVKYFHIFGSTCYILADREYHQKWDAK 70
            AEA+NT C+IHNR+T+R GT  TLYE+WKGRK +VK+FHIFGS CYILADRE  +K D K
Sbjct: 880  AEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPSVKHFHIFGSPCYILADREQRRKMDPK 939

Query: 71   SEHGLFLGYSQNRRAYRVFNNRTELVMETINVVVDDYNNNDKQIDDEEDEASEETIAPTS 130
            S+ G+FLGYS N RAYRVFN+RT  VME+INVVVDD +   K+  +E+   S + +A  +
Sbjct: 940  SDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLSPARKKDVEEDVRTSGDNVADAA 999

Query: 131  TPIVVPKEDTEVTNIELSPNSISKRATAEGTLTILSSHVQKNHPLSSIIGDPSAGIIARR 190
                   E+++    E + N   KR+         S+ +QK HP   IIGDP+ G+  R 
Sbjct: 1000 KS-GENAENSDSATDESNINQPDKRS---------STRIQKMHPKELIIGDPNRGVTTRS 1059

Query: 191  KDKVDYLKMIADLCYTSAIEPTSV---------------ELLQFKRKNVWTLVPKLDEAN 250
            ++    ++++++ C+ S IEP +V               EL QFKR  VW LVP+ +  N
Sbjct: 1060 RE----VEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTN 1119

Query: 251  IIGTKWIFKNKTDESGCVIRNKARLVAQGYAQVEGVDFDETFAPVAKLEAIRLLLSISCF 310
            +IGTKWIFKNKT+E G + RNKARLVAQGY Q+EGVDFDETFAPVA+LE+IRLLL ++C 
Sbjct: 1120 VIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACI 1179

Query: 311  QNFKLYQMDVKSAFLNGYLNEEVY--------------YIYKLNKALYGLKQAPRAWYEC 370
              FKLYQMDVKSAFLNGYLNEEVY              ++Y+L KALYGLKQAPRAWYE 
Sbjct: 1180 LKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYER 1239

Query: 371  LTMYLGEKGYSREETDKTLFINRTSTHLIVAQIYVDDIIFGGFPKTLVNNFIDTMKSEFE 430
            LT +L ++GY +   DKTLF+ + + +L++AQIYVDDI+FGG    ++ +F+  M+SEFE
Sbjct: 1240 LTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFE 1299

Query: 431  MSLVGKLSCFLGLQIKQRSECIFISQKKYAKNIVKNFGLDQSQYKRTPTTTHAKITEDIV 490
            MSLVG+L+ FLGLQ+KQ  + IF+SQ +YAKNIVK FG++ + +KRTP  TH K+++D  
Sbjct: 1300 MSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEA 1359

Query: 491  GIAVDHKLYRSMIGSLLYLTASRPDIAYAVGICA-------------------------- 550
            G +VD  LYRSMIGSLLYLTASRPDI YAVG+CA                          
Sbjct: 1360 GTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSD 1419

Query: 551  ---------------------------RKSTSGGCFFLGNNLVSWFSKKKNCISLSTAEA 610
                                       RKSTSGGCF+LGNNL+SWFSKK+NC+SLSTAEA
Sbjct: 1420 YGIMYCHCSNPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEA 1479

Query: 611  EYIVAGIEFTQLIWMKNMLNEYGIIQDVMTLYCDNMSAIDISKNPVQHSRTKHIDIRHHF 626
            EYI AG   +QL+WMK ML EY + QDVMTLYCDNMSAI+ISKNPVQHSRTKHIDIRHH+
Sbjct: 1480 EYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHY 1539

[Close]

BLAST of Cmc01g0015821 vs. ExPASy TrEMBL
Match: A0A392LWM0 (Gag-pol polyprotein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0000112 PE=4 SV=1)

HSP 1 Score: 729.2 bits (1881), Expect = 1.5e-206
Identity = 380/698 (54.44%), Postives = 476/698 (68.19%), Query Frame = 0


Query: 11   AEAVNTTCHIHNRITIRSGTNVTLYELWKGRKLNVKYFHIFGSTCYILADREYHQKWDAK 70
            AEA+NT C+IHNR+T+RSGT+ TLYELWKGRK  VK+FH+FGS CYILADRE  +K D K
Sbjct: 613  AEAMNTACYIHNRVTLRSGTSTTLYELWKGRKPTVKHFHVFGSKCYILADREPRRKLDPK 672

Query: 71   SEHGLFLGYSQNRRAYRVFNNRTELVMETINVVVDDYNNNDKQIDDEED-EASEETIAPT 130
            SE G+FLGYS N RAYRV N+RT+++ME+INVVVDD   + K  D E D   S++ +  T
Sbjct: 673  SEEGIFLGYSTNSRAYRVMNSRTKVIMESINVVVDD-TTSAKTYDVEPDVTTSDDPVEET 732

Query: 131  STPIVVPKEDTEVTNIELSPNSISKRATAEGTLTILSSHVQKNHPLSSIIGDPSAGIIAR 190
                  P+ D E +  +L+P  ++K         + S  +QKNHP   IIG P+ GI  R
Sbjct: 733  E-----PESDDEASTSDLAP--VNK---------VPSIRIQKNHPKDLIIGSPTQGITTR 792

Query: 191  RKDKVDYLKMIADLCYTSAIEPTSV---------------ELLQFKRKNVWTLVPKLDEA 250
            R +     + I++ C+ S IEP +V               EL QFKR  VW LVP+    
Sbjct: 793  RSN-----ENISNACFVSKIEPKNVKEALTDEFWIEAMQEELTQFKRSEVWDLVPRPCNV 852

Query: 251  NIIGTKWIFKNKTDESGCVIRNKARLVAQGYAQVEGVDFDETFAPVAKLEAIRLLLSISC 310
            N+IGTKW+++NK+DE+G V RNKARLVAQGY+QVEG+DFDETFAPVA+LE+IRLL+ ++C
Sbjct: 853  NVIGTKWVYRNKSDENGVVTRNKARLVAQGYSQVEGLDFDETFAPVARLESIRLLIGVAC 912

Query: 311  FQNFKLYQMDVKSAFLNGYLNEEVY--------------YIYKLNKALYGLKQAPRAWYE 370
               FKLYQMDVKSAFLNGYL+EEVY              ++YKL KALYGLKQAPRAWYE
Sbjct: 913  ILRFKLYQMDVKSAFLNGYLHEEVYVEQPKGFIDPSYPDHVYKLKKALYGLKQAPRAWYE 972

Query: 371  CLTMYLGEKGYSREETDKTLFINRTSTHLIVAQIYVDDIIFGGFPKTLVNNFIDTMKSEF 430
             LT++L  +GY +   DKTLF+   + +L++AQIYVDDI+FGG    +V +F+  M+SEF
Sbjct: 973  RLTIFLVSQGYRKGGNDKTLFVKEKNGNLMIAQIYVDDIVFGGMSNEMVQHFVQQMQSEF 1032

Query: 431  EMSLVGKLSCFLGLQIKQRSECIFISQKKYAKNIVKNFGLDQSQYKRTPTTTHAKITEDI 490
            EMSLVG+L+ FLGLQ+KQ  + IF+SQ KYAKNIVK FG++ + YKRTP  TH K+T D 
Sbjct: 1033 EMSLVGELTYFLGLQVKQMEDTIFVSQSKYAKNIVKKFGMESAAYKRTPAATHLKLTRDE 1092

Query: 491  VGIAVDHKLYRSMIGSLLYLTASRPDIAYAVGICA------------------------- 550
             G+ VD  +Y+SMIGSLLYLTASRPDI +AVG+CA                         
Sbjct: 1093 KGVNVDQSMYKSMIGSLLYLTASRPDITFAVGVCARYQAEPKMSHLIQVKRILKYINGTS 1152

Query: 551  ----------------------------RKSTSGGCFFLGNNLVSWFSKKKNCISLSTAE 610
                                        RKSTSGGCFFLGNNL+SWFSKK+NC+SLSTAE
Sbjct: 1153 DYGILYSQTKNSNLVGYCDADWAGSADDRKSTSGGCFFLGNNLISWFSKKQNCVSLSTAE 1212

Query: 611  AEYIVAGIEFTQLIWMKNMLNEYGIIQDVMTLYCDNMSAIDISKNPVQHSRTKHIDIRHH 626
            AEYI AG   +QL+WMK ML +Y + QDVMTL+CDN+SAI+ISKNP+QHSRTKHIDIRHH
Sbjct: 1213 AEYIAAGSSCSQLLWMKQMLKDYNVPQDVMTLFCDNLSAINISKNPIQHSRTKHIDIRHH 1272

[Close]

BLAST of Cmc01g0015821 vs. ExPASy TrEMBL
Match: Q84VI2 (Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1)

HSP 1 Score: 729.2 bits (1881), Expect = 1.5e-206
Identity = 379/697 (54.38%), Postives = 477/697 (68.44%), Query Frame = 0


Query: 11   AEAVNTTCHIHNRITIRSGTNVTLYELWKGRKLNVKYFHIFGSTCYILADREYHQKWDAK 70
            AEA+NT C+IHNR+T+R GT  TLYE+WKGRK +VK+FHIFGS CYILADRE  +K D K
Sbjct: 882  AEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPSVKHFHIFGSPCYILADREQRRKMDPK 941

Query: 71   SEHGLFLGYSQNRRAYRVFNNRTELVMETINVVVDDYNNNDKQIDDEEDEASEETIAPTS 130
            S+ G+FLGYS N RAYRVFN+RT  VME+INVVVDD +   K+  +E+   S + +A  +
Sbjct: 942  SDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLSPARKKDVEEDVRTSGDNVADAA 1001

Query: 131  TPIVVPKEDTEVTNIELSPNSISKRATAEGTLTILSSHVQKNHPLSSIIGDPSAGIIARR 190
                   E+++    E + N   KR+         S+ +QK HP   IIGDP+ G+  R 
Sbjct: 1002 KS-GENAENSDSATDESNINQPDKRS---------STRIQKMHPKELIIGDPNRGVTTRS 1061

Query: 191  KDKVDYLKMIADLCYTSAIEPTSV---------------ELLQFKRKNVWTLVPKLDEAN 250
            ++    ++++++ C+ S IEP +V               EL QFKR  VW LVP+ +  N
Sbjct: 1062 RE----VEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTN 1121

Query: 251  IIGTKWIFKNKTDESGCVIRNKARLVAQGYAQVEGVDFDETFAPVAKLEAIRLLLSISCF 310
            +IGTKWIFKNKT+E G + RNKARLVAQGY Q+EGVDFDETFAPVA+LE+IRLLL ++C 
Sbjct: 1122 VIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACI 1181

Query: 311  QNFKLYQMDVKSAFLNGYLNEEVY--------------YIYKLNKALYGLKQAPRAWYEC 370
              FKLYQMDVKSAFLNGYLNEEVY              ++Y+L KALYGLKQAPRAWYE 
Sbjct: 1182 LKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYER 1241

Query: 371  LTMYLGEKGYSREETDKTLFINRTSTHLIVAQIYVDDIIFGGFPKTLVNNFIDTMKSEFE 430
            LT +L ++GY +   DKTLF+ + + +L++AQIYVDDI+FGG    ++ +F+  M+SEFE
Sbjct: 1242 LTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFE 1301

Query: 431  MSLVGKLSCFLGLQIKQRSECIFISQKKYAKNIVKNFGLDQSQYKRTPTTTHAKITEDIV 490
            MSLVG+L+ FLGLQ+KQ  + IF+SQ +YAKNIVK FG++ + +KRTP  TH K+++D  
Sbjct: 1302 MSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEA 1361

Query: 491  GIAVDHKLYRSMIGSLLYLTASRPDIAYAVGICA-------------------------- 550
            G +VD K YRSMIGSLLYLTASRPDI YAVG+CA                          
Sbjct: 1362 GTSVDQKPYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSD 1421

Query: 551  ---------------------------RKSTSGGCFFLGNNLVSWFSKKKNCISLSTAEA 610
                                       RKSTSGGCF+LGNNL+SWFSKK+NC+SLSTAEA
Sbjct: 1422 YGIMYCHCSSSMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEA 1481

Query: 611  EYIVAGIEFTQLIWMKNMLNEYGIIQDVMTLYCDNMSAIDISKNPVQHSRTKHIDIRHHF 626
            EYI AG   +QL+WMK ML EY + QDVMTLYCDNMSAI+ISKNPVQHSRTKHIDIRHH+
Sbjct: 1482 EYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHY 1541

[Close]

BLAST of Cmc01g0015821 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 240.7 bits (613), Expect = 3.1e-63
Identity = 154/477 (32.29%), Postives = 233/477 (48.85%), Query Frame = 0


Query: 187 IARRKDKVDYLKMIADLCYTSAIEPTSVELLQFKRKNVWTLVPKLDEANIIGTKWIFKNK 246
           IA+ K+   Y +    L +  A++    E+   +  + W +         IG KW++K K
Sbjct: 80  IAKAKEPSTYNEAKEFLVWCGAMDD---EIGAMETTHTWEICTLPPNKKPIGCKWVYKIK 139

Query: 247 TDESGCVIRNKARLVAQGYAQVEGVDFDETFAPVAKLEAIRLLLSISCFQNFKLYQMDVK 306
            +  G + R KARLVA+GY Q EG+DF ETF+PV KL +++L+L+IS   NF L+Q+D+ 
Sbjct: 140 YNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDIS 199

Query: 307 SAFLNGYLNEEVYY------------------IYKLNKALYGLKQAPRAWYECLTMYLGE 366
           +AFLNG L+EE+Y                   +  L K++YGLKQA R W+   ++ L  
Sbjct: 200 NAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIG 259

Query: 367 KGYSREETDKTLFINRTSTHLIVAQIYVDDIIFGGFPKTLVNNFIDTMKSEFEMSLVGKL 426
            G+ +  +D T F+  T+T  +   +YVDDII        V+     +KS F++  +G L
Sbjct: 260 FGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPL 319

Query: 427 SCFLGLQIKQRSECIFISQKKYAKNIVKNFGLDQSQYKRTPTTTHAKITEDIVGIAVDHK 486
             FLGL+I + +  I I Q+KYA +++   GL   +    P       +    G  VD K
Sbjct: 320 KYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAK 379

Query: 487 LYRSMIGSLLYLTASRPDIAYAVGICA--------------------------------- 546
            YR +IG L+YL  +R DI++AV   +                                 
Sbjct: 380 AYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSS 439

Query: 547 --------------------RKSTSGGCFFLGNNLVSWFSKKKNCISLSTAEAEYIVAGI 592
                               R+ST+G C FLG +L+SW SKK+  +S S+AEAEY     
Sbjct: 440 QAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSF 499

[Close]

BLAST of Cmc01g0015821 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 99.0 bits (245), Expect = 1.5e-20
Identity = 67/223 (30.04%), Postives = 99/223 (44.39%), Query Frame = 0


Query: 374 IYVDDIIFGGFPKTLVNNFIDTMKSEFEMSLVGKLSCFLGLQIKQRSECIFISQKKYAKN 433
           +YVDDI+  G   TL+N  I  + S F M  +G +  FLG+QIK     +F+SQ KYA+ 
Sbjct: 5   LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 434 IVKNFGLDQSQYKRTPTTTHAKITEDI-VGIAVDHKLYRSMIGSLLYLTASRPDIAYAVG 493
           I+ N G+   +   TP     K+   +      D   +RS++G+L YLT +RPDI+YAV 
Sbjct: 65  ILNNAGMLDCKPMSTPLP--LKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVN 124

Query: 494 I-----------------------------------------------------CARKST 543
           I                                                       R+ST
Sbjct: 125 IVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRST 184

[Close]

BLAST of Cmc01g0015821 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 73.9 bits (180), Expect = 5.0e-13
Identity = 35/79 (44.30%), Postives = 48/79 (60.76%), Query Frame = 0


Query: 215 ELLQFKRKNVWTLVPKLDEANIIGTKWIFKNKTDESGCVIRNKARLVAQGYAQVEGVDFD 274
           EL    R   W LVP     NI+G KW+FK K    G + R KARLVA+G+ Q EG+ F 
Sbjct: 47  ELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFV 106

Query: 275 ETFAPVAKLEAIRLLLSIS 294
           ET++PV +   IR +L+++
Sbjct: 107 ETYSPVVRTATIRTILNVA 125

The following BLAST results are available for this feature:

BLAST of Cmc01g0015821 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK23179.1	4.0e-238	88.93	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
AAO73529.1	8.1e-207	54.66	gag-pol polyprotein [Glycine max]	[more]
AAO73521.1	1.8e-206	54.38	gag-pol polyprotein [Glycine max]	[more]
AAO73523.1	3.1e-206	54.38	gag-pol polyprotein [Glycine max]	[more]
MCH79363.1	3.1e-206	54.44	gag-pol polyprotein [Trifolium medium]	[more]

BLAST of Cmc01g0015821 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.1e-76	27.59	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.9e-70	32.92	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	1.3e-66	33.33	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	5.0e-66	32.91	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P92519	2.0e-19	30.04	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc01g0015821 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DIW3	1.9e-238	88.93	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G...	[more]
Q84VH6	3.9e-207	54.66	Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1	[more]
Q84VI4	8.7e-207	54.38	Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1	[more]
A0A392LWM0	1.5e-206	54.44	Gag-pol polyprotein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0000112 PE=...	[more]
Q84VI2	1.5e-206	54.38	Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1	[more]

BLAST of Cmc01g0015821 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	3.1e-63	32.29	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	1.5e-20	30.04	DNA/RNA polymerases superfamily protein	[more]
ATMG00820.1	5.0e-13	44.30	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 223..450 e-value: 4.9E-62 score: 209.7
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 9..104 coord: 231..497
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 486..617 e-value: 6.88969E-61 score: 197.306
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 222..585

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0015821.1	Cmc01g0015821.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding