Cmc01g0015531 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0015531
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Integrase catalytic domain-containing protein
Location	CMiso1.1chr01: 13145456 .. 13145854 (-)
RNA-Seq Expression	Cmc01g0015531
Synteny	Cmc01g0015531

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTCAAAATGACATTTTTAAATGGTGATTTAGATGAAGAAATCTACATGCAACAACCTAAAGGGTTTGTTTTCCTCGATCAAGAAAAGAAAGTTTGCAAATTAATTAGGTCTCTTTATGGACTAAAACAAGCACCAAAACAATGGCTTGAAAGATTTGACAGTGTAATGATGGCCAATGGGTTTAAAATCAATGAATGTGACAAATGTGTATATGTCAAAAACAATGAGAATGACCATGTCATTGTGTGCCTATATGTTGATGATATGCTAATTATTGGTAGCAATATCAACATTATTAAGACTACCAAACAAATGTTGGCCAATAAATTTAAGATGAAAGACATGGGTGTCGTAGATGTTATTCTAGATATTAAAATTTTTAAAACCCCATAA

mRNA sequence

ATGGATGTCAAAATGACATTTTTAAATGGTGATTTAGATGAAGAAATCTACATGCAACAACCTAAAGGGTTTGTTTTCCTCGATCAAGAAAAGAAAGTTTGCAAATTAATTAGGTCTCTTTATGGACTAAAACAAGCACCAAAACAATGGCTTGAAAGATTTGACAGTGTAATGATGGCCAATGGGTTTAAAATCAATGAATGTGACAAATGTGTATATGTCAAAAACAATGAGAATGACCATGTCATTGTGTGCCTATATGTTGATGATATGCTAATTATTGGTAGCAATATCAACATTATTAAGACTACCAAACAAATGTTGGCCAATAAATTTAAGATGAAAGACATGGGTGTCGTAGATGTTATTCTAGATATTAAAATTTTTAAAACCCCATAA

Coding sequence (CDS)

ATGGATGTCAAAATGACATTTTTAAATGGTGATTTAGATGAAGAAATCTACATGCAACAACCTAAAGGGTTTGTTTTCCTCGATCAAGAAAAGAAAGTTTGCAAATTAATTAGGTCTCTTTATGGACTAAAACAAGCACCAAAACAATGGCTTGAAAGATTTGACAGTGTAATGATGGCCAATGGGTTTAAAATCAATGAATGTGACAAATGTGTATATGTCAAAAACAATGAGAATGACCATGTCATTGTGTGCCTATATGTTGATGATATGCTAATTATTGGTAGCAATATCAACATTATTAAGACTACCAAACAAATGTTGGCCAATAAATTTAAGATGAAAGACATGGGTGTCGTAGATGTTATTCTAGATATTAAAATTTTTAAAACCCCATAA

Protein sequence

MDVKMTFLNGDLDEEIYMQQPKGFVFLDQEKKVCKLIRSLYGLKQAPKQWLERFDSVMMANGFKINECDKCVYVKNNENDHVIVCLYVDDMLIIGSNINIIKTTKQMLANKFKMKDMGVVDVILDIKIFKTP

Homology

[Close]

BLAST of Cmc01g0015531 vs. NCBI nr
Match: RVW42300.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 202.6 bits (514), Expect = 2.1e-48
Identity = 94/131 (71.76%), Postives = 114/131 (87.02%), Query Frame = 0


Query: 1   MDVKMTFLNGDLDEEIYMQQPKGFVFLDQEKKVCKLIRSLYGLKQAPKQWLERFDSVMMA 60
           MDVK  FLNG+LDEEIYM QP+GF+   QE+KVCKL++SLYGLKQAPKQW E+FD+ M++
Sbjct: 650 MDVKTAFLNGELDEEIYMDQPEGFIAPGQERKVCKLVKSLYGLKQAPKQWHEKFDNAMIS 709

Query: 61  NGFKINECDKCVYVKNNENDHVIVCLYVDDMLIIGSNINIIKTTKQMLANKFKMKDMGVV 120
           NGFKINECDKCVYVKN +  +VIVCLYVDDMLIIGS+ N+IK TKQML+++F MKD+GV 
Sbjct: 710 NGFKINECDKCVYVKNTQKGYVIVCLYVDDMLIIGSDTNMIKMTKQMLSSRFDMKDLGVA 769

Query: 121 DVILDIKIFKT 132
           D+IL IK+ KT
Sbjct: 770 DIILGIKVSKT 780

[Close]

BLAST of Cmc01g0015531 vs. NCBI nr
Match: RVW67960.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 201.1 bits (510), Expect = 6.1e-48
Identity = 94/131 (71.76%), Postives = 113/131 (86.26%), Query Frame = 0


Query: 1   MDVKMTFLNGDLDEEIYMQQPKGFVFLDQEKKVCKLIRSLYGLKQAPKQWLERFDSVMMA 60
           MDVK  FLNG+LDEEIYM QP+GF+   QE KVCKL++SLYGLKQAPKQW E+FD+ M++
Sbjct: 765 MDVKTAFLNGELDEEIYMDQPEGFIAPGQEGKVCKLVKSLYGLKQAPKQWHEKFDNAMIS 824

Query: 61  NGFKINECDKCVYVKNNENDHVIVCLYVDDMLIIGSNINIIKTTKQMLANKFKMKDMGVV 120
           NGFKINECDKCVYVKN +  +VIVCLYVDDMLIIGS+ N+IK TKQML+++F MKD+GV 
Sbjct: 825 NGFKINECDKCVYVKNTQKGYVIVCLYVDDMLIIGSDTNMIKMTKQMLSSRFDMKDLGVA 884

Query: 121 DVILDIKIFKT 132
           D+IL IK+ KT
Sbjct: 885 DIILGIKVSKT 895

[Close]

BLAST of Cmc01g0015531 vs. NCBI nr
Match: CAN66626.1 (hypothetical protein VITISV_001861 [Vitis vinifera])

HSP 1 Score: 201.1 bits (510), Expect = 6.1e-48
Identity = 94/131 (71.76%), Postives = 114/131 (87.02%), Query Frame = 0


Query: 1   MDVKMTFLNGDLDEEIYMQQPKGFVFLDQEKKVCKLIRSLYGLKQAPKQWLERFDSVMMA 60
           MDVK  FLNG+LDEEIYM Q +GF+   QE+KVCKL++SLYGLKQAPKQW E+FD+ M++
Sbjct: 57  MDVKXAFLNGELDEEIYMDQLEGFIAPGQERKVCKLVKSLYGLKQAPKQWHEKFDNAMIS 116

Query: 61  NGFKINECDKCVYVKNNENDHVIVCLYVDDMLIIGSNINIIKTTKQMLANKFKMKDMGVV 120
           NGFKINECDKCVYVKNN+  +VIVCLYVDDMLIIGS+ N+IK TKQML+++F MKD+GV 
Sbjct: 117 NGFKINECDKCVYVKNNQKGYVIVCLYVDDMLIIGSDTNMIKMTKQMLSSRFDMKDLGVA 176

Query: 121 DVILDIKIFKT 132
           D+IL IK+ KT
Sbjct: 177 DIILGIKVSKT 187

[Close]

BLAST of Cmc01g0015531 vs. NCBI nr
Match: RVW97088.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 197.6 bits (501), Expect = 6.8e-47
Identity = 94/131 (71.76%), Postives = 114/131 (87.02%), Query Frame = 0


Query: 1   MDVKMTFLNGDLDEEIYMQQPKGFVFLDQEKKVCKLIRSLYGLKQAPKQWLERFDSVMMA 60
           MDVK  FLNGDLDEEIYM+QP+GF  L QEKKVCKL++SLYGLKQAPKQW E+FD+VM++
Sbjct: 737 MDVKTAFLNGDLDEEIYMEQPEGFSALGQEKKVCKLVKSLYGLKQAPKQWHEKFDNVMLS 796

Query: 61  NGFKINECDKCVYVKNNENDHVIVCLYVDDMLIIGSNINIIKTTKQMLANKFKMKDMGVV 120
           +GFKINECDKCVYVK+ E+ +VIVCLYVDDMLI+GS+  +I +TK ML ++F MKDMG+ 
Sbjct: 797 HGFKINECDKCVYVKDTEHGYVIVCLYVDDMLIVGSDDKMITSTKNMLNSRFDMKDMGLA 856

Query: 121 DVILDIKIFKT 132
           DVIL IKI +T
Sbjct: 857 DVILGIKIKRT 867

[Close]

BLAST of Cmc01g0015531 vs. NCBI nr
Match: RVW82452.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 196.1 bits (497), Expect = 2.0e-46
Identity = 93/131 (70.99%), Postives = 113/131 (86.26%), Query Frame = 0


Query: 1   MDVKMTFLNGDLDEEIYMQQPKGFVFLDQEKKVCKLIRSLYGLKQAPKQWLERFDSVMMA 60
           MDVK  FLNGDLDEEIYM+QP+GF  L QEKKVCKL++SLYGLKQ PKQW E+FD+VM++
Sbjct: 150 MDVKTAFLNGDLDEEIYMEQPEGFSALGQEKKVCKLVKSLYGLKQTPKQWHEKFDNVMLS 209

Query: 61  NGFKINECDKCVYVKNNENDHVIVCLYVDDMLIIGSNINIIKTTKQMLANKFKMKDMGVV 120
           +GFKINECDKCVYVK+ E+ +VIVCLYVDDMLI+GS+  +I +TK ML ++F MKDMG+ 
Sbjct: 210 HGFKINECDKCVYVKDTEHGYVIVCLYVDDMLIVGSDDKMITSTKNMLNSRFDMKDMGLA 269

Query: 121 DVILDIKIFKT 132
           DVIL IKI +T
Sbjct: 270 DVILGIKIKRT 280

[Close]

BLAST of Cmc01g0015531 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.5e-28
Identity = 65/131 (49.62%), Postives = 88/131 (67.18%), Query Frame = 0


Query: 1    MDVKMTFLNGDLDEEIYMQQPKGFVFLDQEKKVCKLIRSLYGLKQAPKQWLERFDSVMMA 60
            +DVK  FL+GDL+EEIYM+QP+GF    ++  VCKL +SLYGLKQAP+QW  +FDS M +
Sbjct: 921  LDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKS 980

Query: 61   NGFKINECDKCVYVKN-NENDHVIVCLYVDDMLIIGSNINIIKTTKQMLANKFKMKDMGV 120
              +     D CVY K  +EN+ +I+ LYVDDMLI+G +  +I   K  L+  F MKD+G 
Sbjct: 981  QTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGP 1040

Query: 121  VDVILDIKIFK 131
               IL +KI +
Sbjct: 1041 AQQILGMKIVR 1051

[Close]

BLAST of Cmc01g0015531 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 95.9 bits (237), Expect = 3.6e-19
Identity = 51/130 (39.23%), Postives = 77/130 (59.23%), Query Frame = 0


Query: 1    MDVKMTFLNGDLDEEIYMQQPKGFVFLDQEKKVCKLIRSLYGLKQAPKQWLERFDSVMMA 60
            MDVK  FLNG L EEIYM+ P+G         VCKL +++YGLKQA + W E F+  +  
Sbjct: 1001 MDVKTAFLNGTLKEEIYMRLPQGISC--NSDNVCKLNKAIYGLKQAARCWFEVFEQALKE 1060

Query: 61   NGFKINECDKCVYV--KNNENDHVIVCLYVDDMLIIGSNINIIKTTKQMLANKFKMKDMG 120
              F  +  D+C+Y+  K N N+++ V LYVDD++I   ++  +   K+ L  KF+M D+ 
Sbjct: 1061 CEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLN 1120

Query: 121  VVDVILDIKI 129
             +   + I+I
Sbjct: 1121 EIKHFIGIRI 1128

[Close]

BLAST of Cmc01g0015531 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 9.0e-18
Identity = 46/132 (34.85%), Postives = 74/132 (56.06%), Query Frame = 0


Query: 1    MDVKMTFLNGDLDEEIYMQQPKGFVFLDQEKKVCKLIRSLYGLKQAPKQWLERFDSVMMA 60
            +DV   FL G L +++YM QP GF+  D+   VCKL ++LYGLKQAP+ W     + ++ 
Sbjct: 1064 LDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLT 1123

Query: 61   NGFKINECDKCVYVKNNENDHVIVCLYVDDMLIIGSNINIIKTTKQMLANKFKMKDMGVV 120
             GF  +  D  ++V       V + +YVDD+LI G++  ++  T   L+ +F +KD   +
Sbjct: 1124 IGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEEL 1183

Query: 121  DVILDIKIFKTP 133
               L I+  + P
Sbjct: 1184 HYFLGIEAKRVP 1195

[Close]

BLAST of Cmc01g0015531 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.4e-17
Identity = 45/132 (34.09%), Postives = 75/132 (56.82%), Query Frame = 0


Query: 1    MDVKMTFLNGDLDEEIYMQQPKGFVFLDQEKKVCKLIRSLYGLKQAPKQWLERFDSVMMA 60
            +DV   FL G L +E+YM QP GFV  D+   VC+L +++YGLKQAP+ W     + ++ 
Sbjct: 1047 LDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLT 1106

Query: 61   NGFKINECDKCVYVKNNENDHVIVCLYVDDMLIIGSNINIIKTTKQMLANKFKMKDMGVV 120
             GF  +  D  ++V       + + +YVDD+LI G++  ++K T   L+ +F +K+   +
Sbjct: 1107 VGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDL 1166

Query: 121  DVILDIKIFKTP 133
               L I+  + P
Sbjct: 1167 HYFLGIEAKRVP 1178

[Close]

BLAST of Cmc01g0015531 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 88.6 bits (218), Expect = 5.8e-17
Identity = 47/131 (35.88%), Postives = 72/131 (54.96%), Query Frame = 0


Query: 1   MDVKMTFLNGDLDEEIYMQQPKGFVFLDQEKKVCKLIRSLYGLKQAPKQWLERFDSVMMA 60
           MDV   FLN  +DE IY++QP GFV       V +L   +YGLKQAP  W E  ++ +  
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 61  NGFKINECDKCVYVKNNENDHVIVCLYVDDMLIIGSNINIIKTTKQMLANKFKMKDMGVV 120
            GF  +E +  +Y ++  +  + + +YVDD+L+   +  I    KQ L   + MKD+G V
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 121 DVILDIKIFKT 132
           D  L + I ++
Sbjct: 121 DKFLGLNIHQS 131

[Close]

BLAST of Cmc01g0015531 vs. ExPASy TrEMBL
Match: A0A438E3U6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_3747 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 1.0e-48
Identity = 94/131 (71.76%), Postives = 114/131 (87.02%), Query Frame = 0


Query: 1   MDVKMTFLNGDLDEEIYMQQPKGFVFLDQEKKVCKLIRSLYGLKQAPKQWLERFDSVMMA 60
           MDVK  FLNG+LDEEIYM QP+GF+   QE+KVCKL++SLYGLKQAPKQW E+FD+ M++
Sbjct: 650 MDVKTAFLNGELDEEIYMDQPEGFIAPGQERKVCKLVKSLYGLKQAPKQWHEKFDNAMIS 709

Query: 61  NGFKINECDKCVYVKNNENDHVIVCLYVDDMLIIGSNINIIKTTKQMLANKFKMKDMGVV 120
           NGFKINECDKCVYVKN +  +VIVCLYVDDMLIIGS+ N+IK TKQML+++F MKD+GV 
Sbjct: 710 NGFKINECDKCVYVKNTQKGYVIVCLYVDDMLIIGSDTNMIKMTKQMLSSRFDMKDLGVA 769

Query: 121 DVILDIKIFKT 132
           D+IL IK+ KT
Sbjct: 770 DIILGIKVSKT 780

[Close]

BLAST of Cmc01g0015531 vs. ExPASy TrEMBL
Match: A0A438G6X1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1536 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 3.0e-48
Identity = 94/131 (71.76%), Postives = 113/131 (86.26%), Query Frame = 0


Query: 1   MDVKMTFLNGDLDEEIYMQQPKGFVFLDQEKKVCKLIRSLYGLKQAPKQWLERFDSVMMA 60
           MDVK  FLNG+LDEEIYM QP+GF+   QE KVCKL++SLYGLKQAPKQW E+FD+ M++
Sbjct: 765 MDVKTAFLNGELDEEIYMDQPEGFIAPGQEGKVCKLVKSLYGLKQAPKQWHEKFDNAMIS 824

Query: 61  NGFKINECDKCVYVKNNENDHVIVCLYVDDMLIIGSNINIIKTTKQMLANKFKMKDMGVV 120
           NGFKINECDKCVYVKN +  +VIVCLYVDDMLIIGS+ N+IK TKQML+++F MKD+GV 
Sbjct: 825 NGFKINECDKCVYVKNTQKGYVIVCLYVDDMLIIGSDTNMIKMTKQMLSSRFDMKDLGVA 884

Query: 121 DVILDIKIFKT 132
           D+IL IK+ KT
Sbjct: 885 DIILGIKVSKT 895

[Close]

BLAST of Cmc01g0015531 vs. ExPASy TrEMBL
Match: A5AED7 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_001861 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 3.0e-48
Identity = 94/131 (71.76%), Postives = 114/131 (87.02%), Query Frame = 0


Query: 1   MDVKMTFLNGDLDEEIYMQQPKGFVFLDQEKKVCKLIRSLYGLKQAPKQWLERFDSVMMA 60
           MDVK  FLNG+LDEEIYM Q +GF+   QE+KVCKL++SLYGLKQAPKQW E+FD+ M++
Sbjct: 57  MDVKXAFLNGELDEEIYMDQLEGFIAPGQERKVCKLVKSLYGLKQAPKQWHEKFDNAMIS 116

Query: 61  NGFKINECDKCVYVKNNENDHVIVCLYVDDMLIIGSNINIIKTTKQMLANKFKMKDMGVV 120
           NGFKINECDKCVYVKNN+  +VIVCLYVDDMLIIGS+ N+IK TKQML+++F MKD+GV 
Sbjct: 117 NGFKINECDKCVYVKNNQKGYVIVCLYVDDMLIIGSDTNMIKMTKQMLSSRFDMKDLGVA 176

Query: 121 DVILDIKIFKT 132
           D+IL IK+ KT
Sbjct: 177 DIILGIKVSKT 187

[Close]

BLAST of Cmc01g0015531 vs. ExPASy TrEMBL
Match: A0A2N9FGP9 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14225 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 8.6e-48
Identity = 94/131 (71.76%), Postives = 114/131 (87.02%), Query Frame = 0


Query: 1   MDVKMTFLNGDLDEEIYMQQPKGFVFLDQEKKVCKLIRSLYGLKQAPKQWLERFDSVMMA 60
           MDVK  FLNG+LDEEIYM+QP+GF+   +EKKVC+L++SLYGLKQAPKQW E+FD+ MM+
Sbjct: 475 MDVKTAFLNGELDEEIYMEQPEGFIVPGKEKKVCRLVKSLYGLKQAPKQWHEKFDNAMMS 534

Query: 61  NGFKINECDKCVYVKNNENDHVIVCLYVDDMLIIGSNINIIKTTKQMLANKFKMKDMGVV 120
           NGF+INECDKCVYVKN  + +VIVCLYVDDMLI+GSN +IIK TK+ML +KF MKD+GV 
Sbjct: 535 NGFRINECDKCVYVKNTTSGYVIVCLYVDDMLIMGSNNDIIKATKRMLNSKFDMKDLGVA 594

Query: 121 DVILDIKIFKT 132
           DVIL IKI +T
Sbjct: 595 DVILGIKITRT 605

[Close]

BLAST of Cmc01g0015531 vs. ExPASy TrEMBL
Match: A0A2N9GUH4 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30816 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 8.6e-48
Identity = 94/131 (71.76%), Postives = 114/131 (87.02%), Query Frame = 0


Query: 1   MDVKMTFLNGDLDEEIYMQQPKGFVFLDQEKKVCKLIRSLYGLKQAPKQWLERFDSVMMA 60
           MDVK  FLNG+LDEEIYM+QP+GF+   +EKKVC+L++SLYGLKQAPKQW E+FD+ MM+
Sbjct: 334 MDVKTAFLNGELDEEIYMEQPEGFIVPGKEKKVCRLVKSLYGLKQAPKQWHEKFDNAMMS 393

Query: 61  NGFKINECDKCVYVKNNENDHVIVCLYVDDMLIIGSNINIIKTTKQMLANKFKMKDMGVV 120
           NGF+INECDKCVYVKN  + +VIVCLYVDDMLI+GSN +IIK TK+ML +KF MKD+GV 
Sbjct: 394 NGFRINECDKCVYVKNTTSGYVIVCLYVDDMLIMGSNNDIIKATKRMLNSKFDMKDLGVA 453

Query: 121 DVILDIKIFKT 132
           DVIL IKI +T
Sbjct: 454 DVILGIKITRT 464

[Close]

BLAST of Cmc01g0015531 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 89.4 bits (220), Expect = 2.4e-18
Identity = 47/135 (34.81%), Postives = 76/135 (56.30%), Query Frame = 0


Query: 1   MDVKMTFLNGDLDEEIYMQQPKGFVFLDQE----KKVCKLIRSLYGLKQAPKQWLERFDS 60
           +D+   FLNGDLDEEIYM+ P G+     +      VC L +S+YGLKQA +QW  +F  
Sbjct: 193 LDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSV 252

Query: 61  VMMANGFKINECDKCVYVKNNENDHVIVCLYVDDMLIIGSNINIIKTTKQMLANKFKMKD 120
            ++  GF  +  D   ++K      + V +YVDD++I  +N   +   K  L + FK++D
Sbjct: 253 TLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRD 312

Query: 121 MGVVDVILDIKIFKT 132
           +G +   L ++I ++
Sbjct: 313 LGPLKYFLGLEIARS 327

The following BLAST results are available for this feature:

BLAST of Cmc01g0015531 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW42300.1	2.1e-48	71.76	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW67960.1	6.1e-48	71.76	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
CAN66626.1	6.1e-48	71.76	hypothetical protein VITISV_001861 [Vitis vinifera]	[more]
RVW97088.1	6.8e-47	71.76	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW82452.1	2.0e-46	70.99	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]

BLAST of Cmc01g0015531 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.5e-28	49.62	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	3.6e-19	39.23	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	9.0e-18	34.85	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	3.4e-17	34.09	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P25600	5.8e-17	35.88	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc01g0015531 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438E3U6	1.0e-48	71.76	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438G6X1	3.0e-48	71.76	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A5AED7	3.0e-48	71.76	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Vitis vinifera...	[more]
A0A2N9FGP9	8.6e-48	71.76	Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB...	[more]
A0A2N9GUH4	8.6e-48	71.76	Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB...	[more]

BLAST of Cmc01g0015531 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.4e-18	34.81	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..129 e-value: 3.4E-40 score: 138.2
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 1..129
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0015531.1	Cmc01g0015531.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006633	fatty acid biosynthetic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0004315	3-oxoacyl-[acyl-carrier-protein] synthase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding