Cmc01g0014981 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0014981
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty1-copia retrotransposon protein
Location	CMiso1.1chr01: 12205687 .. 12207645 (-)
RNA-Seq Expression	Cmc01g0014981
Synteny	Cmc01g0014981

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGATCAAGACCTTCAACAAAATCCTACCGGACCTGTCTAAACTTGAGCCACTCGACGGAACAAACTACCGCCGTTGGTCCCAAAAGTTGCTAATCTTCTTTGAGCAACTAGAAGTCGATTATGTCCTCACTACAGATCTCCCGACATCTGACCCCCCAACTACCACGTCAACATCCTCTGATCCAGAATCATCTACGGGGCCTCTTACAACTGTCGCTGTCACTGATCAAGTAAAGAAGGACCAAGTGATTGATCCTGAAAAATATGCAATGGATAACAAGACCGTTCGAGGACACTTGTTAAACCATATGTCTAACCCGATGTTTGACCTCTTCATAGTCCAAAAATCTGCCAAGGACATCTGGAGCACCCTGGAATCACGGTATGGAGGAGATGATGCTGGACGGAAAAAATATGTAGTTGGAAAATGGCTACAATTCCAGATGACTGACGACAAACCAATCGTGGAACAAATACATGAGTACGAGAACTTGGTGGCAAACGTCCTGTCTGAAGGCATGAAGATGTGCGAAATACTTCAAGCAAATGTCCTGTTGGAAAAATTTCCTCCATCCTGGAATGACTACCGTAATCATCTCAAGCACAAGAAGAAGGATCTAAAGCTCCAGGAACTCATCAGTCATATGCGCACGGAAGAAGCCAACAGACTGAAAGATAAGTTAGCCTCCCAAAATTTAAATTTAGTTAATGCTAACTTAGTCGAATCATCCTTTGTGAACAGAGACAGAACGAAGCAGGAAAAAGGACATAAAGGGAAAAACTCAGAGAAGAGACAATTCAAGACTAATGGGGGACAAATTAAGAAGAAAAAGCTGGTTTGCTACGTGTGCGGAAAGGAAGGGCACAAATCATACCAATGCAACCAGAGGAAAGGGAGGCCAAGTCAGAAACCAACACCTCAAGCCAATCTAGCAGAGCAAGACAGTGAGATCATAGCAGCCATAGTAGAAGCCAATCTGATAGAAAACAAGACGGACTGGATTCTCGACACTAGAGCCTCGAGACACTTCTGCACCAATCGTGAACTACTCCATGACTACGAAGACACTGCCGATGGAGAATGCGTGTTCATGGGAAACTCAGCCACTGCAGGAGTAATCGGGAAAGGAAAGGTTATTTTAAAGTTAACTTCTGGCAAAACTTTATCTTTAAGTAATGTTCTATATGTCCCTTCCCTACGTAGGAACCTGGTGTTTGGGAGTTTATTGAATCGGGTCGGGCTTAAAATTGTGCTAGAAGGTAACAAAGTTGTCCTCACCAAAAATAGAGATTTTATCGGTAAGGGGTATCTGTCTAATGGTTTATTTGTGCTAAACACGATTTCTATGAATGCAAATGCTTCCAGTTCTGCTTACTTGATTGAATCTGCAAACTTATGGCATGGTAGACTAGGACATGTGAACTTTGCATCAATTAGAAAACTTAAAGACTTGAGACTCATTAATACCTCTGAGACGCATGAAACTGGTAAATGTCCTGTTTGCATAGAAAGTAAATTCCATAAGAAGCCCTTCAAACCAGTTGAATATAGAACTACTAAGCTGTTAGAATTAATTCACTCAGATCTAGCCGACTTTAGAACCACTGCTAGTAGAGGTGGTAAAAACTACTATGTATCCTTTGTTGATGATTACTCTAGATTCACTAAGATATACCTGATAAAAACAAAAAATGAAGCTGTCAGTATGTTCGTAAAATTCAAGGCAGAATCTGAGAATCAGTTAGGAAAAAGGATAAAAAGATTAAGATCAGATAGAGATGGTGAGTATTCCGATAAAACTCTTAAAGAATTTTGTGAATCAAATGGTATCATCCATGAATTTACTGCTCCTTACTCACCACAACAAAATGGCATAGCAGAACGAAAAAATAGAACTCTTAAAGAAATGATGAATGCCATGTTATTAAGCTCCGATTTATCTGATAATATGTGA

mRNA sequence

ATGTCGATCAAGACCTTCAACAAAATCCTACCGGACCTGTCTAAACTTGAGCCACTCGACGGAACAAACTACCGCCGTTGGTCCCAAAAGTTGCTAATCTTCTTTGAGCAACTAGAAGTCGATTATGTCCTCACTACAGATCTCCCGACATCTGACCCCCCAACTACCACGTCAACATCCTCTGATCCAGAATCATCTACGGGGCCTCTTACAACTGTCGCTGTCACTGATCAAGTAAAGAAGGACCAAGTGATTGATCCTGAAAAATATGCAATGGATAACAAGACCGTTCGAGGACACTTGTTAAACCATATGTCTAACCCGATGTTTGACCTCTTCATAGTCCAAAAATCTGCCAAGGACATCTGGAGCACCCTGGAATCACGGTATGGAGGAGATGATGCTGGACGGAAAAAATATGTAGTTGGAAAATGGCTACAATTCCAGATGACTGACGACAAACCAATCGTGGAACAAATACATGAGTACGAGAACTTGGTGGCAAACGTCCTGTCTGAAGGCATGAAGATGTGCGAAATACTTCAAGCAAATGTCCTGTTGGAAAAATTTCCTCCATCCTGGAATGACTACCGTAATCATCTCAAGCACAAGAAGAAGGATCTAAAGCTCCAGGAACTCATCAGTCATATGCGCACGGAAGAAGCCAACAGACTGAAAGATAAGTTAGCCTCCCAAAATTTAAATTTAGTTAATGCTAACTTAGTCGAATCATCCTTTGTGAACAGAGACAGAACGAAGCAGGAAAAAGGACATAAAGGGAAAAACTCAGAGAAGAGACAATTCAAGACTAATGGGGGACAAATTAAGAAGAAAAAGCTGGTTTGCTACGTGTGCGGAAAGGAAGGGCACAAATCATACCAATGCAACCAGAGGAAAGGGAGGCCAAGTCAGAAACCAACACCTCAAGCCAATCTAGCAGAGCAAGACAGTGAGATCATAGCAGCCATAGTAGAAGCCAATCTGATAGAAAACAAGACGGACTGGATTCTCGACACTAGAGCCTCGAGACACTTCTGCACCAATCGTGAACTACTCCATGACTACGAAGACACTGCCGATGGAGAATGCGTGTTCATGGGAAACTCAGCCACTGCAGGAGTAATCGGGAAAGGAAAGGTTATTTTAAAGTTAACTTCTGGCAAAACTTTATCTTTAAGTAATGTTCTATATGTCCCTTCCCTACGTAGGAACCTGGTGTTTGGGAGTTTATTGAATCGGGTCGGGCTTAAAATTGTGCTAGAAGGTAACAAAGTTGTCCTCACCAAAAATAGAGATTTTATCGGTAAGGGGTATCTGTCTAATGGTTTATTTGTGCTAAACACGATTTCTATGAATGCAAATGCTTCCAGTTCTGCTTACTTGATTGAATCTGCAAACTTATGGCATGGTAGACTAGGACATGTGAACTTTGCATCAATTAGAAAACTTAAAGACTTGAGACTCATTAATACCTCTGAGACGCATGAAACTGGTAAATGTCCTGTTTGCATAGAAAGTAAATTCCATAAGAAGCCCTTCAAACCAGTTGAATATAGAACTACTAAGCTGTTAGAATTAATTCACTCAGATCTAGCCGACTTTAGAACCACTGCTAGTAGAGGTGGTAAAAACTACTATGTATCCTTTGTTGATGATTACTCTAGATTCACTAAGATATACCTGATAAAAACAAAAAATGAAGCTGTCAGTATGTTCGTAAAATTCAAGGCAGAATCTGAGAATCAGTTAGGAAAAAGGATAAAAAGATTAAGATCAGATAGAGATGGTGAGTATTCCGATAAAACTCTTAAAGAATTTTGTGAATCAAATGGTATCATCCATGAATTTACTGCTCCTTACTCACCACAACAAAATGGCATAGCAGAACGAAAAAATAGAACTCTTAAAGAAATGATGAATGCCATGTTATTAAGCTCCGATTTATCTGATAATATGTGA

Coding sequence (CDS)

ATGTCGATCAAGACCTTCAACAAAATCCTACCGGACCTGTCTAAACTTGAGCCACTCGACGGAACAAACTACCGCCGTTGGTCCCAAAAGTTGCTAATCTTCTTTGAGCAACTAGAAGTCGATTATGTCCTCACTACAGATCTCCCGACATCTGACCCCCCAACTACCACGTCAACATCCTCTGATCCAGAATCATCTACGGGGCCTCTTACAACTGTCGCTGTCACTGATCAAGTAAAGAAGGACCAAGTGATTGATCCTGAAAAATATGCAATGGATAACAAGACCGTTCGAGGACACTTGTTAAACCATATGTCTAACCCGATGTTTGACCTCTTCATAGTCCAAAAATCTGCCAAGGACATCTGGAGCACCCTGGAATCACGGTATGGAGGAGATGATGCTGGACGGAAAAAATATGTAGTTGGAAAATGGCTACAATTCCAGATGACTGACGACAAACCAATCGTGGAACAAATACATGAGTACGAGAACTTGGTGGCAAACGTCCTGTCTGAAGGCATGAAGATGTGCGAAATACTTCAAGCAAATGTCCTGTTGGAAAAATTTCCTCCATCCTGGAATGACTACCGTAATCATCTCAAGCACAAGAAGAAGGATCTAAAGCTCCAGGAACTCATCAGTCATATGCGCACGGAAGAAGCCAACAGACTGAAAGATAAGTTAGCCTCCCAAAATTTAAATTTAGTTAATGCTAACTTAGTCGAATCATCCTTTGTGAACAGAGACAGAACGAAGCAGGAAAAAGGACATAAAGGGAAAAACTCAGAGAAGAGACAATTCAAGACTAATGGGGGACAAATTAAGAAGAAAAAGCTGGTTTGCTACGTGTGCGGAAAGGAAGGGCACAAATCATACCAATGCAACCAGAGGAAAGGGAGGCCAAGTCAGAAACCAACACCTCAAGCCAATCTAGCAGAGCAAGACAGTGAGATCATAGCAGCCATAGTAGAAGCCAATCTGATAGAAAACAAGACGGACTGGATTCTCGACACTAGAGCCTCGAGACACTTCTGCACCAATCGTGAACTACTCCATGACTACGAAGACACTGCCGATGGAGAATGCGTGTTCATGGGAAACTCAGCCACTGCAGGAGTAATCGGGAAAGGAAAGGTTATTTTAAAGTTAACTTCTGGCAAAACTTTATCTTTAAGTAATGTTCTATATGTCCCTTCCCTACGTAGGAACCTGGTGTTTGGGAGTTTATTGAATCGGGTCGGGCTTAAAATTGTGCTAGAAGGTAACAAAGTTGTCCTCACCAAAAATAGAGATTTTATCGGTAAGGGGTATCTGTCTAATGGTTTATTTGTGCTAAACACGATTTCTATGAATGCAAATGCTTCCAGTTCTGCTTACTTGATTGAATCTGCAAACTTATGGCATGGTAGACTAGGACATGTGAACTTTGCATCAATTAGAAAACTTAAAGACTTGAGACTCATTAATACCTCTGAGACGCATGAAACTGGTAAATGTCCTGTTTGCATAGAAAGTAAATTCCATAAGAAGCCCTTCAAACCAGTTGAATATAGAACTACTAAGCTGTTAGAATTAATTCACTCAGATCTAGCCGACTTTAGAACCACTGCTAGTAGAGGTGGTAAAAACTACTATGTATCCTTTGTTGATGATTACTCTAGATTCACTAAGATATACCTGATAAAAACAAAAAATGAAGCTGTCAGTATGTTCGTAAAATTCAAGGCAGAATCTGAGAATCAGTTAGGAAAAAGGATAAAAAGATTAAGATCAGATAGAGATGGTGAGTATTCCGATAAAACTCTTAAAGAATTTTGTGAATCAAATGGTATCATCCATGAATTTACTGCTCCTTACTCACCACAACAAAATGGCATAGCAGAACGAAAAAATAGAACTCTTAAAGAAATGATGAATGCCATGTTATTAAGCTCCGATTTATCTGATAATATGTGA

Protein sequence

MSIKTFNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTSSDPESSTGPLTTVAVTDQVKKDQVIDPEKYAMDNKTVRGHLLNHMSNPMFDLFIVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPIVEQIHEYENLVANVLSEGMKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNLVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTNGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTRASRHFCTNRELLHDYEDTADGECVFMGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVFGSLLNRVGLKIVLEGNKVVLTKNRDFIGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKDLRLINTSETHETGKCPVCIESKFHKKPFKPVEYRTTKLLELIHSDLADFRTTASRGGKNYYVSFVDDYSRFTKIYLIKTKNEAVSMFVKFKAESENQLGKRIKRLRSDRDGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSDLSDNM

Homology

[Close]

BLAST of Cmc01g0014981 vs. NCBI nr
Match: TYK04394.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 1250.0 bits (3233), Expect = 0.0e+00
Identity = 631/652 (96.78%), Postives = 641/652 (98.31%), Query Frame = 0


Query: 1   MSIKTFNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
           MSIKT NKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SDPESSTGPLTTVAVTDQVKKDQVIDPEKYAMDNKTVRGHLLNHMSNPMFDLFIVQKSAK 120
           SDPESSTGPLT VAVTDQVKKDQVIDPEKYA DNKTVRGHLLNHMS+PMFDLF+VQKSAK
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPIVEQIHEYENLVANVLSEGMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKP++EQIHEYENLVANVLSEGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVMEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNLVNAN 240
           LQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLN VNAN
Sbjct: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNSVNAN 240

Query: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQFKTNGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300
           LVESSFVNRDRTKQEKGHKGKNSEKRQFKT GGQIKKKKLVCYVCGKEGHKSYQCNQRKG
Sbjct: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300

Query: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTRASRHFCTNRELLHDYEDTAD 360
           RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDT ASRHFCTNRELLHDYEDTAD
Sbjct: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD 360

Query: 361 GECVFMGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVFGSLLNRVGLKIVL 420
           GECVFMGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLV GSLLNR GLKIVL
Sbjct: 361 GECVFMGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVL 420

Query: 421 EGNKVVLTKNRDFIGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASI 480
           EG+KVVLTKN DF+GKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASI
Sbjct: 421 EGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASI 480

Query: 481 RKLKDLRLINTSETHETGKCPVCIESKFHKKPFKPVEYRTTKLLELIHSDLADFRTTASR 540
           RKLKD+RLINTSETHETGKCP+CIESKFHKKPFKPVEYRTT+LLELIHSDLADFRTTASR
Sbjct: 481 RKLKDMRLINTSETHETGKCPICIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASR 540

Query: 541 GGKNYYVSFVDDYSRFTKIYLIKTKNEAVSMFVKFKAESENQLGKRIKRLRSDRDGEYSD 600
           GGKNYYVSFVDDYSRFTKIYLI+TKNEAVSMFVKFKAESENQLGKRIKRLRSDR GEYSD
Sbjct: 541 GGKNYYVSFVDDYSRFTKIYLIRTKNEAVSMFVKFKAESENQLGKRIKRLRSDRGGEYSD 600

Query: 601 KTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSDLSDNM 653
           KTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSS LSDNM
Sbjct: 601 KTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNM 652

[Close]

BLAST of Cmc01g0014981 vs. NCBI nr
Match: TYK27931.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 1243.0 bits (3215), Expect = 0.0e+00
Identity = 628/652 (96.32%), Postives = 638/652 (97.85%), Query Frame = 0


Query: 1   MSIKTFNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
           MSIKT NKILPDLSKLEPLDGTNYRRWSQKLLIFF+QLEVDYVLTTDLPTSDPPTTTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFKQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SDPESSTGPLTTVAVTDQVKKDQVIDPEKYAMDNKTVRGHLLNHMSNPMFDLFIVQKSAK 120
           SDPESSTGPLT VAVTDQVKKDQVIDPEKYA DNKTVRGHLLNHMS+PMFDLF+VQKSAK
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPIVEQIHEYENLVANVLSEGMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKP+VEQIHEYENLV NVLSEGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVTNVLSEGMKMCEI 180

Query: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNLVNAN 240
           LQANVLLEKFPPSWNDYRNHLKHKKKDLKL ELISHMRTEEANRLKDKLASQNLN VNAN
Sbjct: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLKLHELISHMRTEEANRLKDKLASQNLNSVNAN 240

Query: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQFKTNGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300
           LVESSFVNRDRTKQEKGHKGKNSEKRQFKT GGQIKKKKLVCYVCGKEGHKSYQCNQRKG
Sbjct: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300

Query: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTRASRHFCTNRELLHDYEDTAD 360
           RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDT ASRHFCTNRELLHDYEDTAD
Sbjct: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD 360

Query: 361 GECVFMGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVFGSLLNRVGLKIVL 420
           GECVFMGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLV GSLLNR GLKIVL
Sbjct: 361 GECVFMGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVL 420

Query: 421 EGNKVVLTKNRDFIGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASI 480
           EG+KVVLTKN DF+GKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASI
Sbjct: 421 EGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASI 480

Query: 481 RKLKDLRLINTSETHETGKCPVCIESKFHKKPFKPVEYRTTKLLELIHSDLADFRTTASR 540
           RKLKD+RLINTSETHETGKC +CIESKFHKKPFKPVEYRTT+LLELIHSDLADFRTTASR
Sbjct: 481 RKLKDMRLINTSETHETGKCSICIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASR 540

Query: 541 GGKNYYVSFVDDYSRFTKIYLIKTKNEAVSMFVKFKAESENQLGKRIKRLRSDRDGEYSD 600
           GGKNYYVSFVDDYSRFTKIYLI+TKNEAVSMFVKFKAESENQLGKRIKRLRSDR GEYSD
Sbjct: 541 GGKNYYVSFVDDYSRFTKIYLIRTKNEAVSMFVKFKAESENQLGKRIKRLRSDRGGEYSD 600

Query: 601 KTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSDLSDNM 653
           KTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSS LSDNM
Sbjct: 601 KTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNM 652

[Close]

BLAST of Cmc01g0014981 vs. NCBI nr
Match: KAA0036643.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 1242.6 bits (3214), Expect = 0.0e+00
Identity = 628/652 (96.32%), Postives = 639/652 (98.01%), Query Frame = 0


Query: 1   MSIKTFNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
           MSIKT NKILPDLSKLEPL+GTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLNGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SDPESSTGPLTTVAVTDQVKKDQVIDPEKYAMDNKTVRGHLLNHMSNPMFDLFIVQKSAK 120
           SDPESSTGPLT VAVTDQVKKDQVIDPEKYA DNKTVRGHLLNHMS+PMFDLF+VQKSAK
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPIVEQIHEYENLVANVLSEGMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKP+VEQIHEYENLVANVLSEGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNLVNAN 240
           LQANVLLEKFPPSWNDYRNHLKHKKKDL+L ELISHMRTEEANRLKDKLASQNLN VNAN
Sbjct: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLRLPELISHMRTEEANRLKDKLASQNLNSVNAN 240

Query: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQFKTNGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300
           LVESSFVNRDRTKQEKGHKGKNSEKRQFKT GGQIKKKKLVCYVCGKEGHKSYQCNQRKG
Sbjct: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300

Query: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTRASRHFCTNRELLHDYEDTAD 360
           RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDT ASRHFCTNRELLHDYEDTAD
Sbjct: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD 360

Query: 361 GECVFMGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVFGSLLNRVGLKIVL 420
           GECVFMGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLV GSLLNR GLKIVL
Sbjct: 361 GECVFMGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVL 420

Query: 421 EGNKVVLTKNRDFIGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASI 480
           EG+KVVLTKN DF+GKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASI
Sbjct: 421 EGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASI 480

Query: 481 RKLKDLRLINTSETHETGKCPVCIESKFHKKPFKPVEYRTTKLLELIHSDLADFRTTASR 540
           RKLKD+RLINTSETHETGKC +CIESKFHKKPFKPVEYRTT+LLELIHSDLADFRTTASR
Sbjct: 481 RKLKDMRLINTSETHETGKCSICIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASR 540

Query: 541 GGKNYYVSFVDDYSRFTKIYLIKTKNEAVSMFVKFKAESENQLGKRIKRLRSDRDGEYSD 600
           GGKNYYVSFVDDYSRFTKIYLI+TKNEAVSMFVKFKAESENQLGKRIKRLRSDR GEYSD
Sbjct: 541 GGKNYYVSFVDDYSRFTKIYLIRTKNEAVSMFVKFKAESENQLGKRIKRLRSDRGGEYSD 600

Query: 601 KTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSDLSDNM 653
           KTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSS LSDNM
Sbjct: 601 KTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNM 652

[Close]

BLAST of Cmc01g0014981 vs. NCBI nr
Match: KAA0056761.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 1241.1 bits (3210), Expect = 0.0e+00
Identity = 626/652 (96.01%), Postives = 638/652 (97.85%), Query Frame = 0


Query: 1   MSIKTFNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
           MSIKT NKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SDPESSTGPLTTVAVTDQVKKDQVIDPEKYAMDNKTVRGHLLNHMSNPMFDLFIVQKSAK 120
           SDPESSTGPLT VAVTDQVKKDQVIDPEKYA DNKTVRGHLLNHMS+PMFDLF+VQKSAK
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPIVEQIHEYENLVANVLSEGMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQFQM DDKP+VEQIHEYENLVANVLSEGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMNDDKPVVEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNLVNAN 240
           LQANVLLEKFPPSWNDYRNHLKHKKKDL+L ELISHMRTEEANRLKDKLASQNLN VNAN
Sbjct: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLRLPELISHMRTEEANRLKDKLASQNLNSVNAN 240

Query: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQFKTNGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300
           LVESSFVNRDRTKQEKGHKGKNSEKRQFKT GGQIKKKKLVCYVCGKEGHKSYQCNQRKG
Sbjct: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300

Query: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTRASRHFCTNRELLHDYEDTAD 360
           RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDT ASRHFCTNRELLHDYEDTAD
Sbjct: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD 360

Query: 361 GECVFMGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVFGSLLNRVGLKIVL 420
           GECVFMGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLV GSLLNR GLKIVL
Sbjct: 361 GECVFMGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVL 420

Query: 421 EGNKVVLTKNRDFIGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASI 480
           EG+KVVLTKN DF+GKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASI
Sbjct: 421 EGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASI 480

Query: 481 RKLKDLRLINTSETHETGKCPVCIESKFHKKPFKPVEYRTTKLLELIHSDLADFRTTASR 540
           RKLKD+RLINTSETHETGKC +CIESKFHKKPFKPVEYRTT+LLELIHSDLADFRTTASR
Sbjct: 481 RKLKDMRLINTSETHETGKCSICIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASR 540

Query: 541 GGKNYYVSFVDDYSRFTKIYLIKTKNEAVSMFVKFKAESENQLGKRIKRLRSDRDGEYSD 600
           GGKNYYVSFVDDYSR+TKIYLI+TKNEAVSMF+KFKAESENQLGKRIKRLRSDR GEYSD
Sbjct: 541 GGKNYYVSFVDDYSRYTKIYLIRTKNEAVSMFIKFKAESENQLGKRIKRLRSDRGGEYSD 600

Query: 601 KTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSDLSDNM 653
           KTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSS LSDNM
Sbjct: 601 KTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNM 652

[Close]

BLAST of Cmc01g0014981 vs. NCBI nr
Match: TYK06518.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 1241.1 bits (3210), Expect = 0.0e+00
Identity = 626/652 (96.01%), Postives = 638/652 (97.85%), Query Frame = 0


Query: 1   MSIKTFNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
           MSIKT NKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SDPESSTGPLTTVAVTDQVKKDQVIDPEKYAMDNKTVRGHLLNHMSNPMFDLFIVQKSAK 120
           SDPESSTGPLT VAVTDQVKKDQVIDPEKYA DNKTVRGHLLNHMS+PMFDLF+VQKSAK
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPIVEQIHEYENLVANVLSEGMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQFQM DDKP+VEQIHEYENLVANVLSEGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMNDDKPVVEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNLVNAN 240
           LQANVLLEKFPPSWNDYRNHLKHKKKDL+L ELISHMRTEEANRLKDKLASQNLN VNAN
Sbjct: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLRLPELISHMRTEEANRLKDKLASQNLNSVNAN 240

Query: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQFKTNGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300
           LVESSFVNRDRTKQEKGHKGKNSEKRQFKT GGQIKKKKLVCYVCGKEGHKSYQCNQRKG
Sbjct: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300

Query: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTRASRHFCTNRELLHDYEDTAD 360
           RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDT ASRHFCTNRELLHDYEDTAD
Sbjct: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD 360

Query: 361 GECVFMGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVFGSLLNRVGLKIVL 420
           GECVFMGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLV GSLLNR GLKIVL
Sbjct: 361 GECVFMGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVL 420

Query: 421 EGNKVVLTKNRDFIGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASI 480
           EG+KVVLTKN DF+GKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASI
Sbjct: 421 EGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASI 480

Query: 481 RKLKDLRLINTSETHETGKCPVCIESKFHKKPFKPVEYRTTKLLELIHSDLADFRTTASR 540
           RKLKD+RLINTSETHETGKC +CIESKFHKKPFKPVEYRTT+LLELIHSDLADFRTTASR
Sbjct: 481 RKLKDMRLINTSETHETGKCSICIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASR 540

Query: 541 GGKNYYVSFVDDYSRFTKIYLIKTKNEAVSMFVKFKAESENQLGKRIKRLRSDRDGEYSD 600
           GGKNYYVSFVDDYSR+TKIYLI+TKNEAVSMF+KFKAESENQLGKRIKRLRSDR GEYSD
Sbjct: 541 GGKNYYVSFVDDYSRYTKIYLIRTKNEAVSMFIKFKAESENQLGKRIKRLRSDRGGEYSD 600

Query: 601 KTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSDLSDNM 653
           KTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSS LSDNM
Sbjct: 601 KTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNM 652

[Close]

BLAST of Cmc01g0014981 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 5.3e-63
Identity = 168/578 (29.07%), Postives = 285/578 (49.31%), Query Frame = 0


Query: 80  KKDQVIDPEKYAMDNKTVRGHLLNHMSNPMFDLFIVQKSAKDIWSTLESRYGGDDAGRKK 139
           KK   +  E +A  ++     +  H+S+ + +  I + +A+ IW+ LES Y       K 
Sbjct: 42  KKPDTMKAEDWADLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKL 101

Query: 140 YVVGKWLQFQMTDDKPIVEQIHEYENLVANVLSEGMKMCEILQANVLLEKFPPSWNDYRN 199
           Y+  +     M++    +  ++ +  L+  + + G+K+ E  +A +LL   P S+++   
Sbjct: 102 YLKKQLYALHMSEGTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLAT 161

Query: 200 HLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNLVNANLVESSFVNRDRTKQEKGHK 259
            + H K  ++L+++ S +   E  R K +   Q L      + E    +  R+    G  
Sbjct: 162 TILHGKTTIELKDVTSALLLNEKMRKKPENQGQAL------ITEGRGRSYQRSSNNYGRS 221

Query: 260 GKNSEKRQFKTNGGQIKKKKLVCYVCGKEGHKSYQC-NQRKGR----PSQKPTPQANLAE 319
           G   + +       + K +   CY C + GH    C N RKG+      +     A + +
Sbjct: 222 GARGKSK------NRSKSRVRNCYNCNQPGHFKRDCPNPRKGKGETSGQKNDDNTAAMVQ 281

Query: 320 QDSEIIAAIVE----ANLIENKTDWILDTRASRHFCTNRELLHDYEDTADGECVFMGNSA 379
            +  ++  I E     +L   +++W++DT AS H    R+L   Y    D   V MGN++
Sbjct: 282 NNDNVVLFINEEEECMHLSGPESEWVVDTAASHHATPVRDLFCRYV-AGDFGTVKMGNTS 341

Query: 380 TAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVFGSLLNRVGLKIVLEGNKVVLTKN 439
            + + G G + +K   G TL L +V +VP LR NL+ G  L+R G +      K  LTK 
Sbjct: 342 YSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKG 401

Query: 440 RDFIGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKDLRLIN 499
              I KG     L+  N        +++   I S +LWH R+GH++   ++ L    LI+
Sbjct: 402 SLVIAKGVARGTLYRTNAEICQGELNAAQDEI-SVDLWHKRMGHMSEKGLQILAKKSLIS 461

Query: 500 TSETHETGKCPVCIESKFHKKPFKPVEYRTTKLLELIHSDLADFRTTASRGGKNYYVSFV 559
            ++      C  C+  K H+  F+    R   +L+L++SD+       S GG  Y+V+F+
Sbjct: 462 YAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFI 521

Query: 560 DDYSRFTKIYLIKTKNEAVSMFVKFKAESENQLGKRIKRLRSDRDGEYSDKTLKEFCESN 619
           DD SR   +Y++KTK++   +F KF A  E + G+++KRLRSD  GEY+ +  +E+C S+
Sbjct: 522 DDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSH 581

Query: 620 GIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSDL 649
           GI HE T P +PQ NG+AER NRT+ E + +ML  + L
Sbjct: 582 GIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKL 605

[Close]

BLAST of Cmc01g0014981 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 8.0e-35
Identity = 170/671 (25.34%), Postives = 281/671 (41.88%), Query Frame = 0


Query: 12  DLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTSSDPESSTGPLT 71
           ++S +  L  TNY  WS+++   F+  E+   L  D  T  PP T  T + P  +     
Sbjct: 19  NMSNVTKLTSTNYLMWSRQVHALFDGYELAGFL--DGSTPMPPATIGTDAVPRVNP---- 78

Query: 72  TVAVTDQVKKDQVIDPEKYAMDNKTVRGHLLNHMSNPMFDLFIVQKSAKDIWSTLESRYG 131
                         D  ++   +K +   +L  +S  +        +A  IW TL   Y 
Sbjct: 79  --------------DYTRWRRQDKLIYSAILGAISMSVQPAVSRATTAAQIWETLRKIYA 138

Query: 132 GDDAGRKKYVVGKWLQFQMTDDKPIVEQIHEYENLVANVLSEGMKMCEILQANVLLEKFP 191
               G         L+F           I  ++ L   +L + M   E  Q   +LE  P
Sbjct: 139 NPSYGHVTQ-----LRF-----------ITRFDQLA--LLGKPMDHDE--QVERVLENLP 198

Query: 192 PSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNLVNANLVESSFVNRDR 251
             +    + +  K     L E+   +   E+  L   L S  +  + AN+V     N +R
Sbjct: 199 DDYKPVIDQIAAKDTPPSLTEIHERLINRESKLL--ALNSAEVVPITANVVTHRNTNTNR 258

Query: 252 TKQEKG------------------HKGKNSEKRQFKTNGGQIKKKKLVCYVCGKEGHKSY 311
            +  +G                    G  S+ RQ K   G+       C +C  +GH + 
Sbjct: 259 NQNNRGDNRNYNNNNNRSNSWQPSSSGSRSDNRQPKPYLGR-------CQICSVQGHSAK 318

Query: 312 QC-----------NQRKGRPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTRAS 371
           +C            Q+   P     P+ANLA             N   N  +W+LD+ A+
Sbjct: 319 RCPQLHQFQSTTNQQQSTSPFTPWQPRANLA------------VNSPYNANNWLLDSGAT 378

Query: 372 RHFCTNRELLHDYEDTADGECVFMGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLR 431
            H  ++   L  ++    G+ V + + +T  +   G   L  TS ++L L+ VLYVP++ 
Sbjct: 379 HHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLP-TSSRSLDLNKVLYVPNIH 438

Query: 432 RNLVFGSLL---NRVG---------LKIVLEGNKVVLTKNRDFIGKGYLSNGLFVLNTIS 491
           +NL+    L   NRV          +K +  G  ++  K +D + +  +++       +S
Sbjct: 439 KNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASS----QAVS 498

Query: 492 MNANASSSAYLIESANLWHGRLGHVNFA---SIRKLKDLRLINTSETHETGKCPVCIESK 551
           M A+  S A    + + WH RLGH + A   S+     L ++N S  H+   C  C  +K
Sbjct: 499 MFASPCSKA----THSSWHSRLGHPSLAILNSVISNHSLPVLNPS--HKLLSCSDCFINK 558

Query: 552 FHKKPFKPVEYRTTKLLELIHSDLADFRTTASRGGKNYYVSFVDDYSRFTKIYLIKTKNE 611
            HK PF      ++K LE I+SD+       S     YYV FVD ++R+T +Y +K K++
Sbjct: 559 SHKVPFSNSTITSSKPLEYIYSDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQ 614

Query: 612 AVSMFVKFKAESENQLGKRIKRLRSDRDGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGI 639
               F+ FK+  EN+   RI  L SD  GE+    L+++   +GI H  + P++P+ NG+
Sbjct: 619 VKDTFIIFKSLVENRFQTRIGTLYSDNGGEF--VVLRDYLSQHGISHFTSPPHTPEHNGL 614

[Close]

BLAST of Cmc01g0014981 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 149.8 bits (377), Expect = 1.0e-34
Identity = 133/589 (22.58%), Postives = 267/589 (45.33%), Query Frame = 0


Query: 75  VTDQVKKDQVIDPEKYAMDNKTVRGHLLNHMSNPMFDLFIVQKSAKDIWSTLESRYGGDD 134
           V D +  ++V D  K A   +  +  ++ ++S+   +      +A+ I   L++ Y    
Sbjct: 35  VVDGLMPNEVDDSWKKA--ERCAKSTIIEYLSDSFLNFATSDITARQILENLDAVYERKS 94

Query: 135 AGRKKYVVGKWLQFQMTDDKPIVEQIHEYENLVANVLSEGMKMCEILQANVLLEKFPPSW 194
              +  +  + L  +++ +  ++   H ++ L++ +L+ G K+ E+ + + LL   P  +
Sbjct: 95  LASQLALRKRLLSLKLSSEMSLLSHFHIFDELISELLAAGAKIEEMDKISHLLITLPSCY 154

Query: 195 NDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNLVNANLVESSFVNRDRTKQ 254
           +     ++   ++      + +   ++  ++K+     +  ++NA +V +   N +  K 
Sbjct: 155 DGIITAIETLSEENLTLAFVKNRLLDQEIKIKNDHNDTSKKVMNA-IVHN---NNNTYKN 214

Query: 255 EKGHKGKNSEKRQFKTNGGQIKKKKLVCYVCGKEGHKSYQC------NQRKGRPSQKPTP 314
                     K+ FK N     K K+ C+ CG+EGH    C         K + ++K   
Sbjct: 215 NLFKNRVTKPKKIFKGN----SKYKVKCHHCGREGHIKKDCFHYKRILNNKNKENEKQV- 274

Query: 315 QANLAEQDSEIIAAIVEANLIENKTDWILDTRASRHFCTNRELLHDYEDTADGECVFMGN 374
           Q   +   + ++  +   ++++N   ++LD+ AS H   +  L  D  +      + +  
Sbjct: 275 QTATSHGIAFMVKEVNNTSVMDN-CGFVLDSGASDHLINDESLYTDSVEVVPPLKIAVAK 334

Query: 375 SATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVFGSLLNRVGLKIVLEGNKVVLT 434
                +    + I++L +   ++L +VL+      NL+    L   G+ I  + + V ++
Sbjct: 335 QGEF-IYATKRGIVRLRNDHEITLEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTIS 394

Query: 435 KNRDFIGKGY-LSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLK--- 494
           KN   + K   + N + V+N  + + NA        +  LWH R GH++   + ++K   
Sbjct: 395 KNGLMVVKNSGMLNNVPVINFQAYSINAKHK----NNFRLWHERFGHISDGKLLEIKRKN 454

Query: 495 ---DLRLINTSETHETGKCPVCIESKFHKKPFKPVEYRT--TKLLELIHSDLADFRTTAS 554
              D  L+N  E      C  C+  K  + PFK ++ +T   + L ++HSD+    T  +
Sbjct: 455 MFSDQSLLNNLEL-SCEICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVT 514

Query: 555 RGGKNYYVSFVDDYSRFTKIYLIKTKNEAVSMFVKFKAESENQLGKRIKRLRSDRDGEYS 614
              KNY+V FVD ++ +   YLIK K++  SMF  F A+SE     ++  L  D   EY 
Sbjct: 515 LDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYL 574

Query: 615 DKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSDL 649
              +++FC   GI +  T P++PQ NG++ER  RT+ E    M+  + L
Sbjct: 575 SNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKL 605

[Close]

BLAST of Cmc01g0014981 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.0e-33
Identity = 156/660 (23.64%), Postives = 284/660 (43.03%), Query Frame = 0


Query: 12  DLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTSSDPESSTGPLT 71
           ++S +  L  TNY  WS+++   F+  E+   L  D  T+ PP T  T + P  +     
Sbjct: 19  NMSNVTKLTSTNYLMWSRQVHALFDGYELAGFL--DGSTTMPPATIGTDAAPRVNP---- 78

Query: 72  TVAVTDQVKKDQVIDPEKYAMDNKTVRGHLLNHMSNPMFDLFIVQKSAKDIWSTLESRYG 131
                         D  ++   +K +   +L  +S  +        +A  IW TL   Y 
Sbjct: 79  --------------DYTRWKRQDKLIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYA 138

Query: 132 GDDAG---RKKYVVGKWLQFQMTDDKPIVEQIHEYENLVANVLSEGMKMCEILQANVLLE 191
               G   + +  + +W +   T D  +   +  ++ L   +L + M   E  Q   +LE
Sbjct: 139 NPSYGHVTQLRTQLKQWTKGTKTIDDYMQGLVTRFDQLA--LLGKPMDHDE--QVERVLE 198

Query: 192 KFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNLVNANLVE----- 251
             P  +    + +  K     L E+   +   E+  L   ++S  +  + AN V      
Sbjct: 199 NLPEEYKPVIDQIAAKDTPPTLTEIHERLLNHESKIL--AVSSATVIPITANAVSHRNTT 258

Query: 252 --SSFVNRDRTKQEKGHKGKNSEK------RQFKTNGGQIKKKKLVCYVCGKEGHKSYQC 311
             ++  N +R  +       N+ K        F  N  Q K     C +CG +GH + +C
Sbjct: 259 TTNNNNNGNRNNRYDNRNNNNNSKPWQQSSTNFHPNNNQSKPYLGKCQICGVQGHSAKRC 318

Query: 312 NQRKG-----RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTRASRHFCTNRE 371
           +Q +         Q P+P      + +  + +   +N      +W+LD+ A+ H  ++  
Sbjct: 319 SQLQHFLSSVNSQQPPSPFTPWQPRANLALGSPYSSN------NWLLDSGATHHITSDFN 378

Query: 372 LLHDYEDTADGECVFMGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLV-FGS 431
            L  ++    G+ V + + +T  +   G   L  T  + L+L N+LYVP++ +NL+    
Sbjct: 379 NLSLHQPYTGGDDVMVADGSTIPISHTGSTSLS-TKSRPLNLHNILYVPNIHKNLISVYR 438

Query: 432 LLNRVGLKI-----------VLEGNKVVLTKNRDFIGKGYLSNGLFVLNTISMNANASSS 491
           L N  G+ +           +  G  ++  K +D + +  +++       +S+ A+ SS 
Sbjct: 439 LCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASS----QPVSLFASPSSK 498

Query: 492 AYLIESANLWHGRLGHVNFASIRK-LKDLRLINTSETHETGKCPVCIESKFHKKPFKPVE 551
           A    + + WH RLGH   + +   + +  L   + +H+   C  C+ +K +K PF    
Sbjct: 499 A----THSSWHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQST 558

Query: 552 YRTTKLLELIHSDLADFRTTASRGGKNYYVSFVDDYSRFTKIYLIKTKNEAVSMFVKFKA 611
             +T+ LE I+SD+       S     YYV FVD ++R+T +Y +K K++    F+ FK 
Sbjct: 559 INSTRPLEYIYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKN 618

Query: 612 ESENQLGKRIKRLRSDRDGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKE 638
             EN+   RI    SD  GE+    L E+   +GI H  + P++P+ NG++ERK+R + E
Sbjct: 619 LLENRFQTRIGTFYSDNGGEF--VALWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVE 634

[Close]

BLAST of Cmc01g0014981 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.7e-13
Identity = 69/241 (28.63%), Postives = 113/241 (46.89%), Query Frame = 0


Query: 427 LTKNRDF--IGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRK-L 486
           + K+ DF  + K YL        TI+ N N S S        L H  LGH NF SI+K L
Sbjct: 553 IVKHGDFYWLSKKYLIPSHISKLTIN-NVNKSKSVNKYPYP-LIHRMLGHANFRSIQKSL 612

Query: 487 KDLRLINTSETH------ETGKCPVCIESKF----HKKPFKPVEYRTTKLLELIHSDLAD 546
           K   +    E+        T +CP C+  K     H K  +     + +  + +H+D+  
Sbjct: 613 KKNAVTYLKESDIEWSNASTYQCPDCLIGKSTKHRHVKGSRLKYQESYEPFQYLHTDIFG 672

Query: 547 FRTTASRGGKNYYVSFVDDYSRFTKIYLIKTKNE--AVSMFVKFKAESENQLGKRIKRLR 606
                 +   +Y++SF D+ +RF  +Y +  + E   +++F    A  +NQ   R+  ++
Sbjct: 673 PVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQ 732

Query: 607 SDRDGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSDLSDN 653
            DR  EY++KTL +F  + GI   +T     + +G+AER NRTL      +L  S L ++
Sbjct: 733 MDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNH 791

[Close]

BLAST of Cmc01g0014981 vs. ExPASy TrEMBL
Match: A0A5D3BZI1 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00770 PE=4 SV=1)

HSP 1 Score: 1250.0 bits (3233), Expect = 0.0e+00
Identity = 631/652 (96.78%), Postives = 641/652 (98.31%), Query Frame = 0


Query: 1   MSIKTFNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
           MSIKT NKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SDPESSTGPLTTVAVTDQVKKDQVIDPEKYAMDNKTVRGHLLNHMSNPMFDLFIVQKSAK 120
           SDPESSTGPLT VAVTDQVKKDQVIDPEKYA DNKTVRGHLLNHMS+PMFDLF+VQKSAK
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPIVEQIHEYENLVANVLSEGMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKP++EQIHEYENLVANVLSEGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVMEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNLVNAN 240
           LQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLN VNAN
Sbjct: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNSVNAN 240

Query: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQFKTNGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300
           LVESSFVNRDRTKQEKGHKGKNSEKRQFKT GGQIKKKKLVCYVCGKEGHKSYQCNQRKG
Sbjct: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300

Query: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTRASRHFCTNRELLHDYEDTAD 360
           RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDT ASRHFCTNRELLHDYEDTAD
Sbjct: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD 360

Query: 361 GECVFMGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVFGSLLNRVGLKIVL 420
           GECVFMGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLV GSLLNR GLKIVL
Sbjct: 361 GECVFMGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVL 420

Query: 421 EGNKVVLTKNRDFIGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASI 480
           EG+KVVLTKN DF+GKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASI
Sbjct: 421 EGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASI 480

Query: 481 RKLKDLRLINTSETHETGKCPVCIESKFHKKPFKPVEYRTTKLLELIHSDLADFRTTASR 540
           RKLKD+RLINTSETHETGKCP+CIESKFHKKPFKPVEYRTT+LLELIHSDLADFRTTASR
Sbjct: 481 RKLKDMRLINTSETHETGKCPICIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASR 540

Query: 541 GGKNYYVSFVDDYSRFTKIYLIKTKNEAVSMFVKFKAESENQLGKRIKRLRSDRDGEYSD 600
           GGKNYYVSFVDDYSRFTKIYLI+TKNEAVSMFVKFKAESENQLGKRIKRLRSDR GEYSD
Sbjct: 541 GGKNYYVSFVDDYSRFTKIYLIRTKNEAVSMFVKFKAESENQLGKRIKRLRSDRGGEYSD 600

Query: 601 KTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSDLSDNM 653
           KTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSS LSDNM
Sbjct: 601 KTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNM 652

[Close]

BLAST of Cmc01g0014981 vs. ExPASy TrEMBL
Match: A0A5D3DWC4 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001190 PE=4 SV=1)

HSP 1 Score: 1243.0 bits (3215), Expect = 0.0e+00
Identity = 628/652 (96.32%), Postives = 638/652 (97.85%), Query Frame = 0


Query: 1   MSIKTFNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
           MSIKT NKILPDLSKLEPLDGTNYRRWSQKLLIFF+QLEVDYVLTTDLPTSDPPTTTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFKQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SDPESSTGPLTTVAVTDQVKKDQVIDPEKYAMDNKTVRGHLLNHMSNPMFDLFIVQKSAK 120
           SDPESSTGPLT VAVTDQVKKDQVIDPEKYA DNKTVRGHLLNHMS+PMFDLF+VQKSAK
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPIVEQIHEYENLVANVLSEGMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKP+VEQIHEYENLV NVLSEGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVTNVLSEGMKMCEI 180

Query: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNLVNAN 240
           LQANVLLEKFPPSWNDYRNHLKHKKKDLKL ELISHMRTEEANRLKDKLASQNLN VNAN
Sbjct: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLKLHELISHMRTEEANRLKDKLASQNLNSVNAN 240

Query: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQFKTNGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300
           LVESSFVNRDRTKQEKGHKGKNSEKRQFKT GGQIKKKKLVCYVCGKEGHKSYQCNQRKG
Sbjct: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300

Query: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTRASRHFCTNRELLHDYEDTAD 360
           RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDT ASRHFCTNRELLHDYEDTAD
Sbjct: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD 360

Query: 361 GECVFMGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVFGSLLNRVGLKIVL 420
           GECVFMGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLV GSLLNR GLKIVL
Sbjct: 361 GECVFMGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVL 420

Query: 421 EGNKVVLTKNRDFIGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASI 480
           EG+KVVLTKN DF+GKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASI
Sbjct: 421 EGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASI 480

Query: 481 RKLKDLRLINTSETHETGKCPVCIESKFHKKPFKPVEYRTTKLLELIHSDLADFRTTASR 540
           RKLKD+RLINTSETHETGKC +CIESKFHKKPFKPVEYRTT+LLELIHSDLADFRTTASR
Sbjct: 481 RKLKDMRLINTSETHETGKCSICIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASR 540

Query: 541 GGKNYYVSFVDDYSRFTKIYLIKTKNEAVSMFVKFKAESENQLGKRIKRLRSDRDGEYSD 600
           GGKNYYVSFVDDYSRFTKIYLI+TKNEAVSMFVKFKAESENQLGKRIKRLRSDR GEYSD
Sbjct: 541 GGKNYYVSFVDDYSRFTKIYLIRTKNEAVSMFVKFKAESENQLGKRIKRLRSDRGGEYSD 600

Query: 601 KTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSDLSDNM 653
           KTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSS LSDNM
Sbjct: 601 KTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNM 652

[Close]

BLAST of Cmc01g0014981 vs. ExPASy TrEMBL
Match: A0A5A7T166 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3921G00120 PE=4 SV=1)

HSP 1 Score: 1242.6 bits (3214), Expect = 0.0e+00
Identity = 628/652 (96.32%), Postives = 639/652 (98.01%), Query Frame = 0


Query: 1   MSIKTFNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
           MSIKT NKILPDLSKLEPL+GTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLNGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SDPESSTGPLTTVAVTDQVKKDQVIDPEKYAMDNKTVRGHLLNHMSNPMFDLFIVQKSAK 120
           SDPESSTGPLT VAVTDQVKKDQVIDPEKYA DNKTVRGHLLNHMS+PMFDLF+VQKSAK
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPIVEQIHEYENLVANVLSEGMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKP+VEQIHEYENLVANVLSEGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNLVNAN 240
           LQANVLLEKFPPSWNDYRNHLKHKKKDL+L ELISHMRTEEANRLKDKLASQNLN VNAN
Sbjct: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLRLPELISHMRTEEANRLKDKLASQNLNSVNAN 240

Query: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQFKTNGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300
           LVESSFVNRDRTKQEKGHKGKNSEKRQFKT GGQIKKKKLVCYVCGKEGHKSYQCNQRKG
Sbjct: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300

Query: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTRASRHFCTNRELLHDYEDTAD 360
           RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDT ASRHFCTNRELLHDYEDTAD
Sbjct: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD 360

Query: 361 GECVFMGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVFGSLLNRVGLKIVL 420
           GECVFMGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLV GSLLNR GLKIVL
Sbjct: 361 GECVFMGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVL 420

Query: 421 EGNKVVLTKNRDFIGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASI 480
           EG+KVVLTKN DF+GKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASI
Sbjct: 421 EGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASI 480

Query: 481 RKLKDLRLINTSETHETGKCPVCIESKFHKKPFKPVEYRTTKLLELIHSDLADFRTTASR 540
           RKLKD+RLINTSETHETGKC +CIESKFHKKPFKPVEYRTT+LLELIHSDLADFRTTASR
Sbjct: 481 RKLKDMRLINTSETHETGKCSICIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASR 540

Query: 541 GGKNYYVSFVDDYSRFTKIYLIKTKNEAVSMFVKFKAESENQLGKRIKRLRSDRDGEYSD 600
           GGKNYYVSFVDDYSRFTKIYLI+TKNEAVSMFVKFKAESENQLGKRIKRLRSDR GEYSD
Sbjct: 541 GGKNYYVSFVDDYSRFTKIYLIRTKNEAVSMFVKFKAESENQLGKRIKRLRSDRGGEYSD 600

Query: 601 KTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSDLSDNM 653
           KTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSS LSDNM
Sbjct: 601 KTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNM 652

[Close]

BLAST of Cmc01g0014981 vs. ExPASy TrEMBL
Match: A0A5D3C5T2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00500 PE=4 SV=1)

HSP 1 Score: 1241.1 bits (3210), Expect = 0.0e+00
Identity = 626/652 (96.01%), Postives = 638/652 (97.85%), Query Frame = 0


Query: 1   MSIKTFNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
           MSIKT NKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SDPESSTGPLTTVAVTDQVKKDQVIDPEKYAMDNKTVRGHLLNHMSNPMFDLFIVQKSAK 120
           SDPESSTGPLT VAVTDQVKKDQVIDPEKYA DNKTVRGHLLNHMS+PMFDLF+VQKSAK
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPIVEQIHEYENLVANVLSEGMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQFQM DDKP+VEQIHEYENLVANVLSEGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMNDDKPVVEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNLVNAN 240
           LQANVLLEKFPPSWNDYRNHLKHKKKDL+L ELISHMRTEEANRLKDKLASQNLN VNAN
Sbjct: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLRLPELISHMRTEEANRLKDKLASQNLNSVNAN 240

Query: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQFKTNGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300
           LVESSFVNRDRTKQEKGHKGKNSEKRQFKT GGQIKKKKLVCYVCGKEGHKSYQCNQRKG
Sbjct: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300

Query: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTRASRHFCTNRELLHDYEDTAD 360
           RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDT ASRHFCTNRELLHDYEDTAD
Sbjct: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD 360

Query: 361 GECVFMGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVFGSLLNRVGLKIVL 420
           GECVFMGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLV GSLLNR GLKIVL
Sbjct: 361 GECVFMGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVL 420

Query: 421 EGNKVVLTKNRDFIGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASI 480
           EG+KVVLTKN DF+GKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASI
Sbjct: 421 EGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASI 480

Query: 481 RKLKDLRLINTSETHETGKCPVCIESKFHKKPFKPVEYRTTKLLELIHSDLADFRTTASR 540
           RKLKD+RLINTSETHETGKC +CIESKFHKKPFKPVEYRTT+LLELIHSDLADFRTTASR
Sbjct: 481 RKLKDMRLINTSETHETGKCSICIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASR 540

Query: 541 GGKNYYVSFVDDYSRFTKIYLIKTKNEAVSMFVKFKAESENQLGKRIKRLRSDRDGEYSD 600
           GGKNYYVSFVDDYSR+TKIYLI+TKNEAVSMF+KFKAESENQLGKRIKRLRSDR GEYSD
Sbjct: 541 GGKNYYVSFVDDYSRYTKIYLIRTKNEAVSMFIKFKAESENQLGKRIKRLRSDRGGEYSD 600

Query: 601 KTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSDLSDNM 653
           KTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSS LSDNM
Sbjct: 601 KTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNM 652

[Close]

BLAST of Cmc01g0014981 vs. ExPASy TrEMBL
Match: A0A5A7UTD6 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold486G00390 PE=4 SV=1)

HSP 1 Score: 1241.1 bits (3210), Expect = 0.0e+00
Identity = 626/652 (96.01%), Postives = 638/652 (97.85%), Query Frame = 0


Query: 1   MSIKTFNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
           MSIKT NKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SDPESSTGPLTTVAVTDQVKKDQVIDPEKYAMDNKTVRGHLLNHMSNPMFDLFIVQKSAK 120
           SDPESSTGPLT VAVTDQVKKDQVIDPEKYA DNKTVRGHLLNHMS+PMFDLF+VQKSAK
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPIVEQIHEYENLVANVLSEGMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQFQM DDKP+VEQIHEYENLVANVLSEGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMNDDKPVVEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNLVNAN 240
           LQANVLLEKFPPSWNDYRNHLKHKKKDL+L ELISHMRTEEANRLKDKLASQNLN VNAN
Sbjct: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLRLPELISHMRTEEANRLKDKLASQNLNSVNAN 240

Query: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQFKTNGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300
           LVESSFVNRDRTKQEKGHKGKNSEKRQFKT GGQIKKKKLVCYVCGKEGHKSYQCNQRKG
Sbjct: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKG 300

Query: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTRASRHFCTNRELLHDYEDTAD 360
           RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDT ASRHFCTNRELLHDYEDTAD
Sbjct: 301 RPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTAD 360

Query: 361 GECVFMGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVFGSLLNRVGLKIVL 420
           GECVFMGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLV GSLLNR GLKIVL
Sbjct: 361 GECVFMGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVL 420

Query: 421 EGNKVVLTKNRDFIGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASI 480
           EG+KVVLTKN DF+GKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASI
Sbjct: 421 EGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASI 480

Query: 481 RKLKDLRLINTSETHETGKCPVCIESKFHKKPFKPVEYRTTKLLELIHSDLADFRTTASR 540
           RKLKD+RLINTSETHETGKC +CIESKFHKKPFKPVEYRTT+LLELIHSDLADFRTTASR
Sbjct: 481 RKLKDMRLINTSETHETGKCSICIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASR 540

Query: 541 GGKNYYVSFVDDYSRFTKIYLIKTKNEAVSMFVKFKAESENQLGKRIKRLRSDRDGEYSD 600
           GGKNYYVSFVDDYSR+TKIYLI+TKNEAVSMF+KFKAESENQLGKRIKRLRSDR GEYSD
Sbjct: 541 GGKNYYVSFVDDYSRYTKIYLIRTKNEAVSMFIKFKAESENQLGKRIKRLRSDRGGEYSD 600

Query: 601 KTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSDLSDNM 653
           KTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSS LSDNM
Sbjct: 601 KTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNM 652

[Close]

BLAST of Cmc01g0014981 vs. TAIR 10
Match: AT4G00980.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 93.6 bits (231), Expect = 6.3e-19
Identity = 70/284 (24.65%), Postives = 137/284 (48.24%), Query Frame = 0


Query: 15  KLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTSSDPESSTGPLTTVA 74
           K+   DG +Y  W+ ++ +F +QL++ YVL      S+P  +  +S  PE++   +T   
Sbjct: 194 KISRFDGKSYLYWASQMELFLKQLKLTYVL------SEPCPSIGSSQGPETNPREITRAD 253

Query: 75  VTDQVKKDQVIDPEKYAMDNKTVRGHLLNHMSNPMFDLFIVQ-KSAKDIWSTLESRYGGD 134
            T           +K+  D+     HL+N +S+ ++  +  + K AK++W  L+  Y  D
Sbjct: 254 ATG----------KKWLRDDYLCYTHLMNSLSDHLYRRYSQKFKHAKELWDELKWVYQCD 313

Query: 135 DAGRKKYVVGKWLQFQMTDDKPIVEQIHEYENLVANVLSEGMKMCEILQANVLLEKFPPS 194
           ++  K+  V K+++F+M +++PI+EQ+  +  +  +++S GM + E    + ++ KFPPS
Sbjct: 314 ESKSKRSQVRKYIEFRMVEERPILEQVQVFNKIADSIVSAGMFLDEAFHVSTIISKFPPS 373

Query: 195 WNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNLVNANLVE--SSFVNRDR 254
           W  +   L  +++ L +  L+  ++ EE                 ++ +E   S     R
Sbjct: 374 WRGFCTRLM-EEEYLPVWMLMERVKAEEELLRNGAKGVTYRPATGSSQMERTPSLGTTHR 433

Query: 255 TKQEKGHKGKNSEKRQFKTNGGQIKKKKLVCYVCGKEGHKSYQC 296
             Q  G K K  E+ +         +  +VC  CG++GH +  C
Sbjct: 434 GSQSVGWKRKEPERDE---------RVIIVCDNCGRKGHLAKHC 451

The following BLAST results are available for this feature:

BLAST of Cmc01g0014981 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK04394.1	0.0e+00	96.78	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK27931.1	0.0e+00	96.32	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0036643.1	0.0e+00	96.32	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0056761.1	0.0e+00	96.01	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK06518.1	0.0e+00	96.01	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc01g0014981 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	5.3e-63	29.07	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	8.0e-35	25.34	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	1.0e-34	22.58	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	2.0e-33	23.64	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q12491	1.7e-13	28.63	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc01g0014981 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BZI1	0.0e+00	96.78	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DWC4	0.0e+00	96.32	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7T166	0.0e+00	96.32	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3C5T2	0.0e+00	96.01	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UTD6	0.0e+00	96.01	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Cmc01g0014981 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G00980.1	6.3e-19	24.65	zinc knuckle (CCHC-type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 281..297 e-value: 0.0059 score: 25.0
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 282..297 score: 9.504374
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 442..507 e-value: 1.7E-11 score: 43.8
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 524..622 e-value: 3.8E-13 score: 49.6
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 511..652 score: 21.486469
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 95..224 e-value: 1.1E-17 score: 64.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 247..270
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 248..266
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 296..312
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 293..312
None	No IPR available	PANTHER	PTHR47592:SF5	OS08G0421300 PROTEIN	coord: 16..436
None	No IPR available	PANTHER	PTHR47592	PBF68 PROTEIN	coord: 16..436
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 516..652 e-value: 1.2E-32 score: 114.7
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 265..303
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 518..647

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0014981.1	Cmc01g0014981.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding