Cmc01g0014341 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0014341
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrotransposon protein
Location	CMiso1.1chr01: 11259450 .. 11260171 (+)
RNA-Seq Expression	Cmc01g0014341
Synteny	Cmc01g0014341

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAAGAACAAGAGGGGGATTGGAAGCCACTCAATATGTGGATGTTGAAGAGATGGTTGCGATTCTTTTGCATATTGTAGCACACGATGTTAAGAATAAGGTAGCTCGACGATATTTTGCAAGGTCTGATGAAACAGTGTCAAGACACCTCAATGTTGTTCTTAACGCAGTTCTTAGACTCCATGAAATCCTTCTTAAGCAACCTGATCCAGTGACCCATTCATGTTCACACGAGAAGTGGCGATGGTTTCAGGTATATAATTGGCCCGCCACTACTTTGCAGTGGATATGTGCTTCTGTGAATTGACAAATAAAATGTCTTTTATCCCTTGACAGAATTGTCTAGGTGCATTAGATGGTACACACATCAAAGTGAATGTAAGTATGAGTGATCACCCAAGGTATAGGTCTAGAAAGGGTGACATTACCACAAATGTACTTGGTGTGTGTTCGCAAAATGGTGAGTACATATTTGTCATGCCTGGATGGGAAGGGTCTGCATCAGATTCGAGAGTACTTAGAGATGTAGTGTCACGACCTACTGGTCTAAAAGTCCCAAAGGGTAAGATGATGCATTCTTCTCCCCACACAGTGGTGTTAGACCATATGCTCATTTAATATGGTATACCCTAATAATTCATTATGGGTGCAACATGGGCAGGTTACTACTACTTGTGTGATGCTGGTTATCTAAATGCTGAAGGATTCTTCGCTCCATAA

mRNA sequence

ATGTTAAGAACAAGAGGGGGATTGGAAGCCACTCAATATGTGGATGTTGAAGAGATGGTTGCGATTCTTTTGCATATTGTAGCACACGATGTTAAGAATAAGGTAGCTCGACGATATTTTGCAAGGTCTGATGAAACAGTGTCAAGACACCTCAATGTTGTTCTTAACGCAGTTCTTAGACTCCATGAAATCCTTCTTAAGCAACCTGATCCAGTGACCCATTCATGTTCACACGAGAAGTGGCGATGGTTTCAGAATTGTCTAGGTGCATTAGATGGTACACACATCAAAGTGAATGTAAGTATGAGTGATCACCCAAGGTATAGGTCTAGAAAGGGTGACATTACCACAAATGTACTTGGTGTGTGTTCGCAAAATGGTGAGTACATATTTGTCATGCCTGGATGGGAAGGGTCTGCATCAGATTCGAGAGTACTTAGAGATGTAGTGTCACGACCTACTGGTCTAAAAGTCCCAAAGGGTTACTACTACTTGTGTGATGCTGGTTATCTAAATGCTGAAGGATTCTTCGCTCCATAA

Coding sequence (CDS)

ATGTTAAGAACAAGAGGGGGATTGGAAGCCACTCAATATGTGGATGTTGAAGAGATGGTTGCGATTCTTTTGCATATTGTAGCACACGATGTTAAGAATAAGGTAGCTCGACGATATTTTGCAAGGTCTGATGAAACAGTGTCAAGACACCTCAATGTTGTTCTTAACGCAGTTCTTAGACTCCATGAAATCCTTCTTAAGCAACCTGATCCAGTGACCCATTCATGTTCACACGAGAAGTGGCGATGGTTTCAGAATTGTCTAGGTGCATTAGATGGTACACACATCAAAGTGAATGTAAGTATGAGTGATCACCCAAGGTATAGGTCTAGAAAGGGTGACATTACCACAAATGTACTTGGTGTGTGTTCGCAAAATGGTGAGTACATATTTGTCATGCCTGGATGGGAAGGGTCTGCATCAGATTCGAGAGTACTTAGAGATGTAGTGTCACGACCTACTGGTCTAAAAGTCCCAAAGGGTTACTACTACTTGTGTGATGCTGGTTATCTAAATGCTGAAGGATTCTTCGCTCCATAA

Protein sequence

MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNVSMSDHPRYRSRKGDITTNVLGVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP

Homology

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BLAST of Cmc01g0014341 vs. NCBI nr
Match: XP_008463037.1 (PREDICTED: uncharacterized protein LOC103501276 [Cucumis melo])

HSP 1 Score: 378.3 bits (970), Expect = 3.8e-101
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLR 60
           MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLR
Sbjct: 1   MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLR 60

Query: 61  LHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNVSMSDHPRYRSRKGDITTNVL 120
           LHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNVSMSDHPRYRSRKGDITTNVL
Sbjct: 61  LHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNVSMSDHPRYRSRKGDITTNVL 120

Query: 121 GVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP 180
           GVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP
Sbjct: 121 GVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP 179

[Close]

BLAST of Cmc01g0014341 vs. NCBI nr
Match: KAA0050107.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 346.7 bits (888), Expect = 1.2e-91
Identity = 164/179 (91.62%), Postives = 169/179 (94.41%), Query Frame = 0


Query: 1   MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLR 60
           MLRT+GGLEATQYVDVEEMVAI LHIVAHDVKN+VARR+FARS ETVSRH N VLNAVLR
Sbjct: 12  MLRTKGGLEATQYVDVEEMVAIFLHIVAHDVKNRVARRHFARSGETVSRHFNAVLNAVLR 71

Query: 61  LHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNVSMSDHPRYRSRKGDITTNVL 120
           LHEILLKQPDPVTHSCSHEK+RWFQNCLGAL GTHIKVNVSMSD PRYRSRKGDITTNVL
Sbjct: 72  LHEILLKQPDPVTHSCSHEKYRWFQNCLGALAGTHIKVNVSMSDRPRYRSRKGDITTNVL 131

Query: 121 GVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP 180
           GVCSQNGE+IFVMPGWEGSASDSRVLRD VSRPT LKVPKGYYYLCDAGY NAEGF AP
Sbjct: 132 GVCSQNGEFIFVMPGWEGSASDSRVLRDAVSRPTSLKVPKGYYYLCDAGYPNAEGFLAP 190

[Close]

BLAST of Cmc01g0014341 vs. NCBI nr
Match: KAA0048191.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 332.8 bits (852), Expect = 1.8e-87
Identity = 160/188 (85.11%), Postives = 166/188 (88.30%), Query Frame = 0


Query: 1   MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLR 60
           MLRTRGGLEATQYVDVEEM AI LHIVAHDVKN+VARR+FARSD TVSRH NVVLNAVLR
Sbjct: 12  MLRTRGGLEATQYVDVEEMTAIFLHIVAHDVKNRVARRHFARSDATVSRHFNVVLNAVLR 71

Query: 61  LHEILLKQPDPVTHSCSHEKWRWFQ---------NCLGALDGTHIKVNVSMSDHPRYRSR 120
           +HEILLKQPD VTHSCSHEKWRWFQ           + ALDGTHIKVNVSMSDHPRYRSR
Sbjct: 72  IHEILLKQPDQVTHSCSHEKWRWFQVYNWPATTLQSICALDGTHIKVNVSMSDHPRYRSR 131

Query: 121 KGDITTNVLGVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYL 180
           K DITTNVLG+CSQNGE+IFVMPGWEGSASDSRVLRDVVSRP GLKVPKGYYYLCDA YL
Sbjct: 132 KSDITTNVLGLCSQNGEFIFVMPGWEGSASDSRVLRDVVSRPIGLKVPKGYYYLCDASYL 191

[Close]

BLAST of Cmc01g0014341 vs. NCBI nr
Match: KAA0065306.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 331.6 bits (849), Expect = 4.1e-87
Identity = 158/179 (88.27%), Postives = 164/179 (91.62%), Query Frame = 0


Query: 1   MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLR 60
           MLRT+GGLEATQYVDVEEM+AI LHIVAHDVKN+V RR+FARS ETVSRH     NAVLR
Sbjct: 12  MLRTKGGLEATQYVDVEEMIAIFLHIVAHDVKNRVTRRHFARSGETVSRH----FNAVLR 71

Query: 61  LHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNVSMSDHPRYRSRKGDITTNVL 120
           LHEILLKQPDPVT+SCSHEKWRWFQ CLGALDGTHIKVNVSMSD PRYRSRKGDITTNVL
Sbjct: 72  LHEILLKQPDPVTYSCSHEKWRWFQKCLGALDGTHIKVNVSMSDRPRYRSRKGDITTNVL 131

Query: 121 GVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP 180
           GVC QNGE+IFVMPGWEGSASDSRVLRD VSR TGLKVPKGYYYLCDAGY NAEGF AP
Sbjct: 132 GVCLQNGEFIFVMPGWEGSASDSRVLRDAVSRLTGLKVPKGYYYLCDAGYPNAEGFLAP 186

[Close]

BLAST of Cmc01g0014341 vs. NCBI nr
Match: TYK08067.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 308.1 bits (788), Expect = 4.8e-80
Identity = 151/179 (84.36%), Postives = 156/179 (87.15%), Query Frame = 0


Query: 1   MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLR 60
           MLRTRGGLEATQYVDVEEM AI LHIVAHDVKN+VARR+FARSD TVSRH NVVLNAVLR
Sbjct: 12  MLRTRGGLEATQYVDVEEMTAIFLHIVAHDVKNRVARRHFARSDATVSRHFNVVLNAVLR 71

Query: 61  LHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNVSMSDHPRYRSRKGDITTNVL 120
           +HEILLKQPD VTHSC             ALDGTHIKVNVSMSDHPRYRSRK DITTNVL
Sbjct: 72  IHEILLKQPDQVTHSC-------------ALDGTHIKVNVSMSDHPRYRSRKSDITTNVL 131

Query: 121 GVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP 180
           G+CSQNGE+IFVMPGWEGSASDSRVLRDVVSRP GLKVPKGYYYLCDA YLN EGF AP
Sbjct: 132 GLCSQNGEFIFVMPGWEGSASDSRVLRDVVSRPIGLKVPKGYYYLCDASYLNVEGFLAP 177

[Close]

BLAST of Cmc01g0014341 vs. ExPASy TrEMBL
Match: A0A1S3CJV8 (uncharacterized protein LOC103501276 OS=Cucumis melo OX=3656 GN=LOC103501276 PE=3 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 1.8e-101
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLR 60
           MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLR
Sbjct: 1   MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLR 60

Query: 61  LHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNVSMSDHPRYRSRKGDITTNVL 120
           LHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNVSMSDHPRYRSRKGDITTNVL
Sbjct: 61  LHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNVSMSDHPRYRSRKGDITTNVL 120

Query: 121 GVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP 180
           GVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP
Sbjct: 121 GVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP 179

[Close]

BLAST of Cmc01g0014341 vs. ExPASy TrEMBL
Match: A0A5A7U6W3 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001210 PE=3 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 5.9e-92
Identity = 164/179 (91.62%), Postives = 169/179 (94.41%), Query Frame = 0


Query: 1   MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLR 60
           MLRT+GGLEATQYVDVEEMVAI LHIVAHDVKN+VARR+FARS ETVSRH N VLNAVLR
Sbjct: 12  MLRTKGGLEATQYVDVEEMVAIFLHIVAHDVKNRVARRHFARSGETVSRHFNAVLNAVLR 71

Query: 61  LHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNVSMSDHPRYRSRKGDITTNVL 120
           LHEILLKQPDPVTHSCSHEK+RWFQNCLGAL GTHIKVNVSMSD PRYRSRKGDITTNVL
Sbjct: 72  LHEILLKQPDPVTHSCSHEKYRWFQNCLGALAGTHIKVNVSMSDRPRYRSRKGDITTNVL 131

Query: 121 GVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP 180
           GVCSQNGE+IFVMPGWEGSASDSRVLRD VSRPT LKVPKGYYYLCDAGY NAEGF AP
Sbjct: 132 GVCSQNGEFIFVMPGWEGSASDSRVLRDAVSRPTSLKVPKGYYYLCDAGYPNAEGFLAP 190

[Close]

BLAST of Cmc01g0014341 vs. ExPASy TrEMBL
Match: A0A5A7U3R2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G001010 PE=3 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 8.9e-88
Identity = 160/188 (85.11%), Postives = 166/188 (88.30%), Query Frame = 0


Query: 1   MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLR 60
           MLRTRGGLEATQYVDVEEM AI LHIVAHDVKN+VARR+FARSD TVSRH NVVLNAVLR
Sbjct: 12  MLRTRGGLEATQYVDVEEMTAIFLHIVAHDVKNRVARRHFARSDATVSRHFNVVLNAVLR 71

Query: 61  LHEILLKQPDPVTHSCSHEKWRWFQ---------NCLGALDGTHIKVNVSMSDHPRYRSR 120
           +HEILLKQPD VTHSCSHEKWRWFQ           + ALDGTHIKVNVSMSDHPRYRSR
Sbjct: 72  IHEILLKQPDQVTHSCSHEKWRWFQVYNWPATTLQSICALDGTHIKVNVSMSDHPRYRSR 131

Query: 121 KGDITTNVLGVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYL 180
           K DITTNVLG+CSQNGE+IFVMPGWEGSASDSRVLRDVVSRP GLKVPKGYYYLCDA YL
Sbjct: 132 KSDITTNVLGLCSQNGEFIFVMPGWEGSASDSRVLRDVVSRPIGLKVPKGYYYLCDASYL 191

[Close]

BLAST of Cmc01g0014341 vs. ExPASy TrEMBL
Match: A0A5A7VG45 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00220 PE=3 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 2.0e-87
Identity = 158/179 (88.27%), Postives = 164/179 (91.62%), Query Frame = 0


Query: 1   MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLR 60
           MLRT+GGLEATQYVDVEEM+AI LHIVAHDVKN+V RR+FARS ETVSRH     NAVLR
Sbjct: 12  MLRTKGGLEATQYVDVEEMIAIFLHIVAHDVKNRVTRRHFARSGETVSRH----FNAVLR 71

Query: 61  LHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNVSMSDHPRYRSRKGDITTNVL 120
           LHEILLKQPDPVT+SCSHEKWRWFQ CLGALDGTHIKVNVSMSD PRYRSRKGDITTNVL
Sbjct: 72  LHEILLKQPDPVTYSCSHEKWRWFQKCLGALDGTHIKVNVSMSDRPRYRSRKGDITTNVL 131

Query: 121 GVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP 180
           GVC QNGE+IFVMPGWEGSASDSRVLRD VSR TGLKVPKGYYYLCDAGY NAEGF AP
Sbjct: 132 GVCLQNGEFIFVMPGWEGSASDSRVLRDAVSRLTGLKVPKGYYYLCDAGYPNAEGFLAP 186

[Close]

BLAST of Cmc01g0014341 vs. ExPASy TrEMBL
Match: A0A5D3C7X6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002160 PE=3 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 2.3e-80
Identity = 151/179 (84.36%), Postives = 156/179 (87.15%), Query Frame = 0


Query: 1   MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLR 60
           MLRTRGGLEATQYVDVEEM AI LHIVAHDVKN+VARR+FARSD TVSRH NVVLNAVLR
Sbjct: 12  MLRTRGGLEATQYVDVEEMTAIFLHIVAHDVKNRVARRHFARSDATVSRHFNVVLNAVLR 71

Query: 61  LHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNVSMSDHPRYRSRKGDITTNVL 120
           +HEILLKQPD VTHSC             ALDGTHIKVNVSMSDHPRYRSRK DITTNVL
Sbjct: 72  IHEILLKQPDQVTHSC-------------ALDGTHIKVNVSMSDHPRYRSRKSDITTNVL 131

Query: 121 GVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP 180
           G+CSQNGE+IFVMPGWEGSASDSRVLRDVVSRP GLKVPKGYYYLCDA YLN EGF AP
Sbjct: 132 GLCSQNGEFIFVMPGWEGSASDSRVLRDVVSRPIGLKVPKGYYYLCDASYLNVEGFLAP 177

[Close]

BLAST of Cmc01g0014341 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 134.0 bits (336), Expect = 1.2e-31
Identity = 67/179 (37.43%), Postives = 107/179 (59.78%), Query Frame = 0


Query: 1   MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLR 60
           +L+TRG L  T  + +E  +AI L I+ H+++ +  +  F  S ET+SRH N VLNAV+ 
Sbjct: 59  LLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYSGETISRHFNNVLNAVIA 118

Query: 61  LHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNVSMSDHPRYRSRKGDITTNVL 120
           + +    QP+  + +  ++   +F++C+G +D  HI V V + +   +R+  G +T NVL
Sbjct: 119 ISKDFF-QPNSNSDTLENDD-PYFKDCVGVVDSFHIPVMVGVDEQGPFRNGNGLLTQNVL 178

Query: 121 GVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP 180
              S +  + +V+ GWEGSASD +VL   ++R   L+VP+G YY+ D  Y N  GF AP
Sbjct: 179 AASSFDLRFNYVLAGWEGSASDQQVLNAALTRRNKLQVPQGKYYIVDNKYPNLPGFIAP 235

[Close]

BLAST of Cmc01g0014341 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 91.7 bits (226), Expect = 6.6e-19
Identity = 55/187 (29.41%), Postives = 84/187 (44.92%), Query Frame = 0


Query: 1   MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLR 60
           ML+T   L+ T  + +EE VA+ L I  H+   +     F R+ ETV R    VL A   
Sbjct: 83  MLQTNYDLQPTLNISIEESVAMFLRICGHNEVYRDVGLRFGRNQETVQRKFREVLTATEL 142

Query: 61  LHEILLKQPD-------PVTHSCSHEKWRWFQNCLGALDGTHIKVNVSMSDHPRYRSRKG 120
           L    ++ P        P         W +F   +GA+DGTH+ V V       Y +R  
Sbjct: 143 LACDYIRTPTRQELYRIPERLQVDQRYWPYFSGFVGAMDGTHVCVKVKPDLQGMYWNRHD 202

Query: 121 DITTNVLGVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKG-YYYLCDAGYLN 180
           + + N++ +C     + ++  G  GS  D+ VL+      +   +P    YYL D+GY N
Sbjct: 203 NASLNIMAICDLKMLFTYIWNGAPGSCYDTAVLQIAQQSDSEFPLPPSEKYYLVDSGYPN 262

[Close]

BLAST of Cmc01g0014341 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 85.9 bits (211), Expect = 3.6e-17
Identity = 37/79 (46.84%), Postives = 57/79 (72.15%), Query Frame = 0


Query: 83  WFQNCLGALDGTHIKVNVSMSDHPRYRSRKGDITTNVLGVCSQNGEYIFVMPGWEGSASD 142
           +F++C+GA+D THI   VS    P +R+RKGDI+ N+L  C+ + E+++V+ GWEGSA D
Sbjct: 21  YFKDCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLSGWEGSAHD 80

Query: 143 SRVLRDVVSRPTG-LKVPK 161
           S+VL D ++R +  L VP+
Sbjct: 81  SKVLNDALTRNSNRLPVPE 99

[Close]

BLAST of Cmc01g0014341 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-10
Identity = 56/181 (30.94%), Postives = 83/181 (45.86%), Query Frame = 0


Query: 1   MLRTRGGLEATQYVDVEEMVAILLHIVA-HDVKNKVARRYFARSDETVSRHLNVVLNAVL 60
           +L  + GL+++  + ++E VAI L I A +D +  +A R F  + ET+ R  + VL A+ 
Sbjct: 41  ILHGKYGLQSSTNISLDESVAIFLIICASNDTQRDIALR-FGHAQETIWRKFHDVLKAME 100

Query: 61  RLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNVSMSDHPRYRSRKGDITTNV 120
           RL  +   +P  V      E+ R   N L   D T           P      G  + NV
Sbjct: 101 RL-AVEYIRPRKV------EELRAISNRL--QDDTRY--------WPFLMDLLGIASFNV 160

Query: 121 LGVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKV-PKGYYYLCDAGYLNAEGFFA 180
           L +C  +  + +   G  GS  D+RVL   +S      V P   YYL D+GY N  G+ A
Sbjct: 161 LAICDLDMLFTYCFVGMAGSTHDARVLSAAISDDPLFHVPPDSKYYLVDSGYANKRGYLA 203

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BLAST of Cmc01g0014341 vs. TAIR 10
Match: AT5G35695.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 1.9e-05
Identity = 22/51 (43.14%), Postives = 29/51 (56.86%), Query Frame = 0


Query: 129 YIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP 180
           +I+V+ GWEGSA DSRVL D + +          +YL D G+ N   F AP
Sbjct: 25  FIYVLSGWEGSAHDSRVLSDALRK----------FYLVDCGFANRLNFLAP 65

The following BLAST results are available for this feature:

BLAST of Cmc01g0014341 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008463037.1	3.8e-101	100.00	PREDICTED: uncharacterized protein LOC103501276 [Cucumis melo]	[more]
KAA0050107.1	1.2e-91	91.62	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
KAA0048191.1	1.8e-87	85.11	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0065306.1	4.1e-87	88.27	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK08067.1	4.8e-80	84.36	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc01g0014341 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc01g0014341 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CJV8	1.8e-101	100.00	uncharacterized protein LOC103501276 OS=Cucumis melo OX=3656 GN=LOC103501276 PE=...	[more]
A0A5A7U6W3	5.9e-92	91.62	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5A7U3R2	8.9e-88	85.11	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VG45	2.0e-87	88.27	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3C7X6	2.3e-80	84.36	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Cmc01g0014341 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	1.2e-31	37.43	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT1G43722.1	6.6e-19	29.41	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G28950.1	3.6e-17	46.84	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G28730.1	1.5e-10	30.94	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G35695.1	1.9e-05	43.14	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027806	Harbinger transposase-derived nuclease domain	PFAM	PF13359	DDE_Tnp_4	coord: 91..174 e-value: 1.1E-11 score: 44.6
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 1..173
None	No IPR available	PANTHER	PTHR22930:SF216	OS11G0577650 PROTEIN	coord: 1..173

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0014341.1	Cmc01g0014341.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0046872	metal ion binding