Cmc01g0014211 (gene) Melon (Charmono) v1.1

Overview
NameCmc01g0014211
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationCMiso1.1chr01: 11098141 .. 11098740 (+)
RNA-Seq ExpressionCmc01g0014211
SyntenyCmc01g0014211
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGTTCTGGGATCTGGCACTATTCATCTTACCCCATCATTTTCTCTGTCTTCTGTGTTATATTTGCCTAACTTATCCTATAATTTAATTTCTATTAGTCAACTTACTCATGACCTTAATTCTATTGTCTTGTTCTTTCCTGATTATTGCTTGTTTCAAGATTGTGTGACGAAGAAGATTATTGGTAGAGGATATGAGTTGGGAGGCCTTTATCTCTTTAATCACCAAGTACAGCAAGTTGTGGCGTGTCCTGTCGTTCCTTCTCCCTTTGAAGTTCATTATCGCTTGGGTCATCTATCTTTGTTCGTGTTGAAGAAACTTTATCCCGTATTTAGGTCTTTGTCCTCTTTAAATTGTGGTTCGTGTAAATTTGCTAAATTTCATCGTCTTAGTTTGAGTCCTCGAGTCAATAAACGAGCAAGTGCTCCATTTGAGTTAGTTCATTCTAATATTTGGGGTCCATGTCCAGTTGTATCTCAAACAAACTTTCGTTATTTTGTTACATTTATTGACGATCATTCTTGTCTAACTTGGTTATATTTAATGAAAAATCGTTCTAAGTTATTATCTCATTTTGTGTCTTTCATGCTTAAATAA

mRNA sequence

ATGTCTGTTCTGGGATCTGGCACTATTCATCTTACCCCATCATTTTCTCTGTCTTCTGTGTTATATTTGCCTAACTTATCCTATAATTTAATTTCTATTAGTCAACTTACTCATGACCTTAATTCTATTGTCTTGTTCTTTCCTGATTATTGCTTGTTTCAAGATTGTGTGACGAAGAAGATTATTGGTAGAGGATATGAGTTGGGAGGCCTTTATCTCTTTAATCACCAAGTACAGCAAGTTGTGGCGTGTCCTGTCGTTCCTTCTCCCTTTGAAGTTCATTATCGCTTGGGTCATCTATCTTTGTTCGTGTTGAAGAAACTTTATCCCGTATTTAGGTCTTTGTCCTCTTTAAATTGTGGTTCGTGTAAATTTGCTAAATTTCATCGTCTTAGTTTGAGTCCTCGAGTCAATAAACGAGCAAGTGCTCCATTTGAGTTAGTTCATTCTAATATTTGGGGTCCATGTCCAGTTGTATCTCAAACAAACTTTCGTTATTTTGTTACATTTATTGACGATCATTCTTGTCTAACTTGGTTATATTTAATGAAAAATCGTTCTAAGTTATTATCTCATTTTGTGTCTTTCATGCTTAAATAA

Coding sequence (CDS)

ATGTCTGTTCTGGGATCTGGCACTATTCATCTTACCCCATCATTTTCTCTGTCTTCTGTGTTATATTTGCCTAACTTATCCTATAATTTAATTTCTATTAGTCAACTTACTCATGACCTTAATTCTATTGTCTTGTTCTTTCCTGATTATTGCTTGTTTCAAGATTGTGTGACGAAGAAGATTATTGGTAGAGGATATGAGTTGGGAGGCCTTTATCTCTTTAATCACCAAGTACAGCAAGTTGTGGCGTGTCCTGTCGTTCCTTCTCCCTTTGAAGTTCATTATCGCTTGGGTCATCTATCTTTGTTCGTGTTGAAGAAACTTTATCCCGTATTTAGGTCTTTGTCCTCTTTAAATTGTGGTTCGTGTAAATTTGCTAAATTTCATCGTCTTAGTTTGAGTCCTCGAGTCAATAAACGAGCAAGTGCTCCATTTGAGTTAGTTCATTCTAATATTTGGGGTCCATGTCCAGTTGTATCTCAAACAAACTTTCGTTATTTTGTTACATTTATTGACGATCATTCTTGTCTAACTTGGTTATATTTAATGAAAAATCGTTCTAAGTTATTATCTCATTTTGTGTCTTTCATGCTTAAATAA

Protein sequence

MSVLGSGTIHLTPSFSLSSVLYLPNLSYNLISISQLTHDLNSIVLFFPDYCLFQDCVTKKIIGRGYELGGLYLFNHQVQQVVACPVVPSPFEVHYRLGHLSLFVLKKLYPVFRSLSSLNCGSCKFAKFHRLSLSPRVNKRASAPFELVHSNIWGPCPVVSQTNFRYFVTFIDDHSCLTWLYLMKNRSKLLSHFVSFMLK
Homology
BLAST of Cmc01g0014211 vs. NCBI nr
Match: XP_031744753.1 (uncharacterized protein LOC101212255 isoform X1 [Cucumis sativus])

HSP 1 Score: 343.6 bits (880), Expect = 1.2e-90
Identity = 167/195 (85.64%), Postives = 178/195 (91.28%), Query Frame = 0

Query: 2   SVLGSGTIHLTPSFSLSSVLYLPNLSYNLISISQLTHDLNSIVLFFPDYCLFQDCVTKKI 61
           SVLGSGTIHLTPSFSLSSVL+LPNLS+NLIS SQLTHDLN +V+FF  YCLFQD VTKKI
Sbjct: 368 SVLGSGTIHLTPSFSLSSVLHLPNLSFNLISTSQLTHDLNCVVMFFSGYCLFQDRVTKKI 427

Query: 62  IGRGYELGGLYLFNHQVQQVVACPVVPSPFEVHYRLGHLSLFVLKKLYPVFRSLSSLNCG 121
           IGRGYE GGLYLF+HQV Q VACPVVPSPFEVH RLGH SLFVLKKLYP FRSLSSLNC 
Sbjct: 428 IGRGYESGGLYLFDHQVSQAVACPVVPSPFEVHCRLGHPSLFVLKKLYPEFRSLSSLNCD 487

Query: 122 SCKFAKFHRLSLSPRVNKRASAPFELVHSNIWGPCPVVSQTNFRYFVTFIDDHSCLTWLY 181
           SC+FAKFHRLS SPRV+KRA APFELVHS+IWGPCPVVSQT FRYFVTF+DDHS LTWLY
Sbjct: 488 SCQFAKFHRLSSSPRVDKRAIAPFELVHSDIWGPCPVVSQTGFRYFVTFVDDHSRLTWLY 547

Query: 182 LMKNRSKLLSHFVSF 197
           LMKNRS+LLSHF +F
Sbjct: 548 LMKNRSELLSHFCAF 562

BLAST of Cmc01g0014211 vs. NCBI nr
Match: XP_031744754.1 (uncharacterized protein LOC101212255 isoform X2 [Cucumis sativus])

HSP 1 Score: 259.6 bits (662), Expect = 2.2e-65
Identity = 123/144 (85.42%), Postives = 131/144 (90.97%), Query Frame = 0

Query: 53  FQDCVTKKIIGRGYELGGLYLFNHQVQQVVACPVVPSPFEVHYRLGHLSLFVLKKLYPVF 112
           F+D VTKKIIGRGYE GGLYLF+HQV Q VACPVVPSPFEVH RLGH SLFVLKKLYP F
Sbjct: 404 FKDRVTKKIIGRGYESGGLYLFDHQVSQAVACPVVPSPFEVHCRLGHPSLFVLKKLYPEF 463

Query: 113 RSLSSLNCGSCKFAKFHRLSLSPRVNKRASAPFELVHSNIWGPCPVVSQTNFRYFVTFID 172
           RSLSSLNC SC+FAKFHRLS SPRV+KRA APFELVHS+IWGPCPVVSQT FRYFVTF+D
Sbjct: 464 RSLSSLNCDSCQFAKFHRLSSSPRVDKRAIAPFELVHSDIWGPCPVVSQTGFRYFVTFVD 523

Query: 173 DHSCLTWLYLMKNRSKLLSHFVSF 197
           DHS LTWLYLMKNRS+LLSHF +F
Sbjct: 524 DHSRLTWLYLMKNRSELLSHFCAF 547

BLAST of Cmc01g0014211 vs. NCBI nr
Match: XP_031744755.1 (uncharacterized protein LOC101212255 isoform X3 [Cucumis sativus])

HSP 1 Score: 259.6 bits (662), Expect = 2.2e-65
Identity = 123/144 (85.42%), Postives = 131/144 (90.97%), Query Frame = 0

Query: 53  FQDCVTKKIIGRGYELGGLYLFNHQVQQVVACPVVPSPFEVHYRLGHLSLFVLKKLYPVF 112
           F+D VTKKIIGRGYE GGLYLF+HQV Q VACPVVPSPFEVH RLGH SLFVLKKLYP F
Sbjct: 371 FKDRVTKKIIGRGYESGGLYLFDHQVSQAVACPVVPSPFEVHCRLGHPSLFVLKKLYPEF 430

Query: 113 RSLSSLNCGSCKFAKFHRLSLSPRVNKRASAPFELVHSNIWGPCPVVSQTNFRYFVTFID 172
           RSLSSLNC SC+FAKFHRLS SPRV+KRA APFELVHS+IWGPCPVVSQT FRYFVTF+D
Sbjct: 431 RSLSSLNCDSCQFAKFHRLSSSPRVDKRAIAPFELVHSDIWGPCPVVSQTGFRYFVTFVD 490

Query: 173 DHSCLTWLYLMKNRSKLLSHFVSF 197
           DHS LTWLYLMKNRS+LLSHF +F
Sbjct: 491 DHSRLTWLYLMKNRSELLSHFCAF 514

BLAST of Cmc01g0014211 vs. NCBI nr
Match: XP_031744756.1 (uncharacterized protein LOC101212255 isoform X4 [Cucumis sativus] >XP_031744757.1 uncharacterized protein LOC101212255 isoform X4 [Cucumis sativus])

HSP 1 Score: 259.6 bits (662), Expect = 2.2e-65
Identity = 123/144 (85.42%), Postives = 131/144 (90.97%), Query Frame = 0

Query: 53  FQDCVTKKIIGRGYELGGLYLFNHQVQQVVACPVVPSPFEVHYRLGHLSLFVLKKLYPVF 112
           F+D VTKKIIGRGYE GGLYLF+HQV Q VACPVVPSPFEVH RLGH SLFVLKKLYP F
Sbjct: 233 FKDRVTKKIIGRGYESGGLYLFDHQVSQAVACPVVPSPFEVHCRLGHPSLFVLKKLYPEF 292

Query: 113 RSLSSLNCGSCKFAKFHRLSLSPRVNKRASAPFELVHSNIWGPCPVVSQTNFRYFVTFID 172
           RSLSSLNC SC+FAKFHRLS SPRV+KRA APFELVHS+IWGPCPVVSQT FRYFVTF+D
Sbjct: 293 RSLSSLNCDSCQFAKFHRLSSSPRVDKRAIAPFELVHSDIWGPCPVVSQTGFRYFVTFVD 352

Query: 173 DHSCLTWLYLMKNRSKLLSHFVSF 197
           DHS LTWLYLMKNRS+LLSHF +F
Sbjct: 353 DHSRLTWLYLMKNRSELLSHFCAF 376

BLAST of Cmc01g0014211 vs. NCBI nr
Match: XP_031744758.1 (uncharacterized protein LOC101212255 isoform X5 [Cucumis sativus])

HSP 1 Score: 258.8 bits (660), Expect = 3.7e-65
Identity = 123/143 (86.01%), Postives = 130/143 (90.91%), Query Frame = 0

Query: 54  QDCVTKKIIGRGYELGGLYLFNHQVQQVVACPVVPSPFEVHYRLGHLSLFVLKKLYPVFR 113
           QD VTKKIIGRGYE GGLYLF+HQV Q VACPVVPSPFEVH RLGH SLFVLKKLYP FR
Sbjct: 28  QDRVTKKIIGRGYESGGLYLFDHQVSQAVACPVVPSPFEVHCRLGHPSLFVLKKLYPEFR 87

Query: 114 SLSSLNCGSCKFAKFHRLSLSPRVNKRASAPFELVHSNIWGPCPVVSQTNFRYFVTFIDD 173
           SLSSLNC SC+FAKFHRLS SPRV+KRA APFELVHS+IWGPCPVVSQT FRYFVTF+DD
Sbjct: 88  SLSSLNCDSCQFAKFHRLSSSPRVDKRAIAPFELVHSDIWGPCPVVSQTGFRYFVTFVDD 147

Query: 174 HSCLTWLYLMKNRSKLLSHFVSF 197
           HS LTWLYLMKNRS+LLSHF +F
Sbjct: 148 HSRLTWLYLMKNRSELLSHFCAF 170

BLAST of Cmc01g0014211 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.3e-16
Identity = 62/193 (32.12%), Postives = 96/193 (49.74%), Query Frame = 0

Query: 14  SFSLSSVLYLPNLSYNLISISQLTHDLNSIVLFFPDYCLFQDCVTKKIIGRGYELGGLY- 73
           S  L+ VLY+PN+  NLIS+ +L +     V FFP     +D  T   + +G     LY 
Sbjct: 363 SLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELYE 422

Query: 74  --LFNHQVQQVVACPVVPSPFEV-HYRLGHLSLFVLKKL-----YPVFR-SLSSLNCGSC 133
             + + Q   + A P   +     H RLGH SL +L  +      PV   S   L+C  C
Sbjct: 423 WPIASSQAVSMFASPCSKATHSSWHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDC 482

Query: 134 KFAKFHRLSLSPRVNKRASAPFELVHSNIWGPCPVVSQTNFRYFVTFIDDHSCLTWLYLM 193
              K H++  S      +S P E ++S++W   P++S  N+RY+V F+D  +  TWLY +
Sbjct: 483 FINKSHKVPFS-NSTITSSKPLEYIYSDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPL 542

Query: 194 KNRSKLLSHFVSF 197
           K +S++   F+ F
Sbjct: 543 KQKSQVKDTFIIF 553

BLAST of Cmc01g0014211 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.1e-14
Identity = 58/192 (30.21%), Postives = 97/192 (50.52%), Query Frame = 0

Query: 16  SLSSVLYLPNLSYNLISISQLTHDLNSIVLFFPDYCLFQDCVTKKIIGRGYELGGLYLFN 75
           +L ++LY+PN+  NLIS+ +L +     V FFP     +D  T   + +G     LY + 
Sbjct: 386 NLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWP 445

Query: 76  HQVQQVVACPVVPSPFEV----HYRLGHLSLFVLKKLYPVFRSLSSLN-------CGSCK 135
               Q V+    PS        H RLGH +  +L  +   + SLS LN       C  C 
Sbjct: 446 IASSQPVSLFASPSSKATHSSWHARLGHPAPSILNSVISNY-SLSVLNPSHKFLSCSDCL 505

Query: 136 FAKFHRLSLSPRVNKRASAPFELVHSNIWGPCPVVSQTNFRYFVTFIDDHSCLTWLYLMK 195
             K +++  S +    ++ P E ++S++W   P++S  N+RY+V F+D  +  TWLY +K
Sbjct: 506 INKSNKVPFS-QSTINSTRPLEYIYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYPLK 565

Query: 196 NRSKLLSHFVSF 197
            +S++   F++F
Sbjct: 566 QKSQVKETFITF 574

BLAST of Cmc01g0014211 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.5e-11
Identity = 54/187 (28.88%), Postives = 86/187 (45.99%), Query Frame = 0

Query: 17  LSSVLYLPNLSYNLISISQLTHDLNSIVLFFPDYCLFQDCVTKKIIGRGYELGGLYLFNH 76
           L  V ++P+L  NLIS   L  D          + L +  +   +I +G   G LY  N 
Sbjct: 350 LKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSL---VIAKGVARGTLYRTNA 409

Query: 77  QVQQ--VVACPVVPSPFEVHYRLGHLS-----LFVLKKLYPVFRSLSSLNCGSCKFAKFH 136
           ++ Q  + A     S    H R+GH+S     +   K L    +  +   C  C F K H
Sbjct: 410 EICQGELNAAQDEISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQH 469

Query: 137 RLSLSPRVNKRASAPFELVHSNIWGPCPVVSQTNFRYFVTFIDDHSCLTWLYLMKNRSKL 196
           R+S      ++ +   +LV+S++ GP  + S    +YFVTFIDD S   W+Y++K + ++
Sbjct: 470 RVSFQTSSERKLNI-LDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQV 529

BLAST of Cmc01g0014211 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 47.0 bits (110), Expect = 2.9e-04
Identity = 40/120 (33.33%), Postives = 56/120 (46.67%), Query Frame = 0

Query: 94  HYRLGHLS---LFVLKKLYPVFRSLSSLN--------CGSCKFAKFHRLSLSPRVNK-RA 153
           H R GH+S   L  +K+   +F   S LN        C  C   K  RL      +K   
Sbjct: 419 HERFGHISDGKLLEIKR-KNMFSDQSLLNNLELSCEICEPCLNGKQARLPFKQLKDKTHI 478

Query: 154 SAPFELVHSNIWGPCPVVSQTNFRYFVTFIDD--HSCLTWLYLMKNRSKLLSHFVSFMLK 200
             P  +VHS++ GP   V+  +  YFV F+D   H C+T  YL+K +S + S F  F+ K
Sbjct: 479 KRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVT--YLIKYKSDVFSMFQDFVAK 535

BLAST of Cmc01g0014211 vs. ExPASy TrEMBL
Match: A0A438H537 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_4131 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 6.0e-61
Identity = 118/194 (60.82%), Postives = 146/194 (75.26%), Query Frame = 0

Query: 3   VLGSGTIHLTPSFSLSSVLYLPNLSYNLISISQLTHDLNSIVLFFPDYCLFQDCVTKKII 62
           + GSGT+  T S +LSSVL LPNL++NLIS+S+LT DLN  V FFPD+C+FQD +TK+  
Sbjct: 369 IKGSGTMKPTSSITLSSVLNLPNLAFNLISVSKLTKDLNCSVSFFPDHCVFQDLMTKRTF 428

Query: 63  GRGYELGGLYLFNHQVQQVVACPVVPSPFEVHYRLGHLSLFVLKKLYPVFRSLSSLNCGS 122
           G+G+   GLY+ +  V + VAC    SP E H RLGH SL VLKKL P F +L SL+C S
Sbjct: 429 GKGHVSDGLYILDEWVPRPVACVSTASPVEAHCRLGHPSLPVLKKLCPQFDTLPSLDCES 488

Query: 123 CKFAKFHRLSLSPRVNKRASAPFELVHSNIWGPCPVVSQTNFRYFVTFIDDHSCLTWLYL 182
           C FAK HR SL PR+NKRA + FELVHS++WGPCPV SQT FRYFVTF+DD S +TW+Y 
Sbjct: 489 CHFAKHHRSSLGPRLNKRAESLFELVHSDVWGPCPVTSQTGFRYFVTFVDDFSRMTWIYF 548

Query: 183 MKNRSKLLSHFVSF 197
           MKNRS++ SHF +F
Sbjct: 549 MKNRSEVFSHFCAF 562

BLAST of Cmc01g0014211 vs. ExPASy TrEMBL
Match: A5AWD0 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_019194 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 1.3e-60
Identity = 117/194 (60.31%), Postives = 146/194 (75.26%), Query Frame = 0

Query: 3   VLGSGTIHLTPSFSLSSVLYLPNLSYNLISISQLTHDLNSIVLFFPDYCLFQDCVTKKII 62
           + GSGT+  T S +LSSVL LPNL++NLIS+S+LT +LN  V FFPD+C+FQD +TK+  
Sbjct: 370 IKGSGTVKPTSSITLSSVLNLPNLAFNLISVSKLTKNLNCSVSFFPDHCVFQDLMTKRTF 429

Query: 63  GRGYELGGLYLFNHQVQQVVACPVVPSPFEVHYRLGHLSLFVLKKLYPVFRSLSSLNCGS 122
           G+G+   GLY+ +  V + VAC    SP E H RLGH SL VLKKL P F +L SL+C S
Sbjct: 430 GKGHVSDGLYILDEWVPRPVACVSTASPVEAHCRLGHPSLPVLKKLCPQFDTLPSLDCES 489

Query: 123 CKFAKFHRLSLSPRVNKRASAPFELVHSNIWGPCPVVSQTNFRYFVTFIDDHSCLTWLYL 182
           C FAK HR SL PR+NKRA + FELVHS++WGPCPV SQT FRYFVTF+DD S +TW+Y 
Sbjct: 490 CHFAKHHRSSLGPRLNKRAESLFELVHSDVWGPCPVTSQTGFRYFVTFVDDFSRMTWIYF 549

Query: 183 MKNRSKLLSHFVSF 197
           MKNRS++ SHF +F
Sbjct: 550 MKNRSEVFSHFCAF 563

BLAST of Cmc01g0014211 vs. ExPASy TrEMBL
Match: A0A438GAA6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2601 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 1.3e-60
Identity = 117/194 (60.31%), Postives = 146/194 (75.26%), Query Frame = 0

Query: 3   VLGSGTIHLTPSFSLSSVLYLPNLSYNLISISQLTHDLNSIVLFFPDYCLFQDCVTKKII 62
           + GSGT+  T S +LSSVL LPNL++NLIS+S+LT +LN  V FFPD+C+FQD +TK+  
Sbjct: 309 IKGSGTVKPTSSITLSSVLNLPNLAFNLISVSKLTKNLNCSVSFFPDHCVFQDLMTKRTF 368

Query: 63  GRGYELGGLYLFNHQVQQVVACPVVPSPFEVHYRLGHLSLFVLKKLYPVFRSLSSLNCGS 122
           G+G+   GLY+ +  V + VAC    SP E H RLGH SL VLKKL P F +L SL+C S
Sbjct: 369 GKGHVSDGLYILDEWVPRPVACVSTASPVEAHCRLGHPSLPVLKKLCPQFDTLPSLDCES 428

Query: 123 CKFAKFHRLSLSPRVNKRASAPFELVHSNIWGPCPVVSQTNFRYFVTFIDDHSCLTWLYL 182
           C FAK HR SL PR+NKRA + FELVHS++WGPCPV SQT FRYFVTF+DD S +TW+Y 
Sbjct: 429 CHFAKHHRSSLGPRLNKRAESLFELVHSDVWGPCPVTSQTGFRYFVTFVDDFSRMTWIYF 488

Query: 183 MKNRSKLLSHFVSF 197
           MKNRS++ SHF +F
Sbjct: 489 MKNRSEVFSHFCAF 502

BLAST of Cmc01g0014211 vs. ExPASy TrEMBL
Match: B0FBS2 (Uncharacterized protein OS=Vitis hybrid cultivar OX=241073 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 1.3e-60
Identity = 117/194 (60.31%), Postives = 146/194 (75.26%), Query Frame = 0

Query: 3   VLGSGTIHLTPSFSLSSVLYLPNLSYNLISISQLTHDLNSIVLFFPDYCLFQDCVTKKII 62
           + GSGT+  T S +LSSVL LPNL++NLIS+S+LT +LN  V FFPD+C+FQD +TK+  
Sbjct: 370 IKGSGTVKPTSSITLSSVLNLPNLAFNLISVSKLTKNLNCSVSFFPDHCVFQDLMTKRTF 429

Query: 63  GRGYELGGLYLFNHQVQQVVACPVVPSPFEVHYRLGHLSLFVLKKLYPVFRSLSSLNCGS 122
           G+G+   GLY+ +  V + VAC    SP E H RLGH SL VLKKL P F +L SL+C S
Sbjct: 430 GKGHVSDGLYILDEWVPRPVACVSTASPVEAHCRLGHPSLPVLKKLCPQFDTLPSLDCES 489

Query: 123 CKFAKFHRLSLSPRVNKRASAPFELVHSNIWGPCPVVSQTNFRYFVTFIDDHSCLTWLYL 182
           C FAK HR SL PR+NKRA + FELVHS++WGPCPV SQT FRYFVTF+DD S +TW+Y 
Sbjct: 490 CHFAKHHRSSLGPRLNKRAESLFELVHSDVWGPCPVTSQTGFRYFVTFVDDFSRMTWIYF 549

Query: 183 MKNRSKLLSHFVSF 197
           MKNRS++ SHF +F
Sbjct: 550 MKNRSEVFSHFCAF 563

BLAST of Cmc01g0014211 vs. ExPASy TrEMBL
Match: A0A438DZQ8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_3537 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 3.9e-60
Identity = 116/194 (59.79%), Postives = 145/194 (74.74%), Query Frame = 0

Query: 3   VLGSGTIHLTPSFSLSSVLYLPNLSYNLISISQLTHDLNSIVLFFPDYCLFQDCVTKKII 62
           + GSGT+  T S +LSSVL LPNL++NLIS+S+LT +LN  V FFPD+C+FQD +TK+  
Sbjct: 369 IKGSGTVKPTSSITLSSVLNLPNLAFNLISVSKLTKNLNCSVSFFPDHCVFQDLMTKRTF 428

Query: 63  GRGYELGGLYLFNHQVQQVVACPVVPSPFEVHYRLGHLSLFVLKKLYPVFRSLSSLNCGS 122
           G+G+   GLY+ +  V + VAC    SP E H RLGH SL VLKKL P F +L SL+C S
Sbjct: 429 GKGHVSDGLYILDEWVPRPVACVSTASPVEAHCRLGHPSLPVLKKLCPQFDTLPSLDCES 488

Query: 123 CKFAKFHRLSLSPRVNKRASAPFELVHSNIWGPCPVVSQTNFRYFVTFIDDHSCLTWLYL 182
           C FAK HR SL PR+NKR  + FELVHS++WGPCPV SQT FRYFVTF+DD S +TW+Y 
Sbjct: 489 CHFAKHHRSSLGPRLNKRVESLFELVHSDVWGPCPVTSQTGFRYFVTFVDDFSRMTWIYF 548

Query: 183 MKNRSKLLSHFVSF 197
           MKNRS++ SHF +F
Sbjct: 549 MKNRSEVFSHFCAF 562

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_031744753.11.2e-9085.64uncharacterized protein LOC101212255 isoform X1 [Cucumis sativus][more]
XP_031744754.12.2e-6585.42uncharacterized protein LOC101212255 isoform X2 [Cucumis sativus][more]
XP_031744755.12.2e-6585.42uncharacterized protein LOC101212255 isoform X3 [Cucumis sativus][more]
XP_031744756.12.2e-6585.42uncharacterized protein LOC101212255 isoform X4 [Cucumis sativus] >XP_031744757.... [more]
XP_031744758.13.7e-6586.01uncharacterized protein LOC101212255 isoform X5 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Q9ZT944.3e-1632.12Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Q94HW21.1e-1430.21Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
P109785.5e-1128.88Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P041462.9e-0433.33Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
Match NameE-valueIdentityDescription
A0A438H5376.0e-6160.82Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A5AWD01.3e-6060.31Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_019194 PE=4 SV=1[more]
A0A438GAA61.3e-6060.31Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
B0FBS21.3e-6060.31Uncharacterized protein OS=Vitis hybrid cultivar OX=241073 PE=4 SV=1[more]
A0A438DZQ83.9e-6059.79Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 136..197
e-value: 2.4E-8
score: 35.5
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 140..187

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc01g0014211.1Cmc01g0014211.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding