Cmc01g0014101 (gene) Melon (Charmono) v1.1

Overview
NameCmc01g0014101
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrotransposon protein
LocationCMiso1.1chr01: 10995864 .. 11001919 (-)
RNA-Seq ExpressionCmc01g0014101
SyntenyCmc01g0014101
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTATCCTCTATGTTAATGTCAAGCCCACGTTTGGCTCACGGTCTAAAACAATGGGATTAAGAGAGGGGGTAAATAGGCGGTTTAATTTTTTTACAAAAAAAAAAAAGAAAAAAACCTTTCTCCTCCTAATTTCTTCTCAATCTTTCATAGTCTCTCTCATCTCTTCTTCTTCGCGCATCAAACCCTAGTCGCTCTTGATCTCCTTGCGTCTTCATCTCTTCTAATTTCTCTTCTGTCTCTTTTTCTTTTTCTCATACAAAGAAGCAAGGTGAGAGAAAATGGACTTTTTTTGTAATTTTTTAATACTTTATTTATTCTATTCTTTTTGTTCCTTCCTTCTTTTTTTTTTTTTTTTGAATCTTTGTTGTCCTTTTTTTTTCAATCCTTTGTTCCATTTTTTTTGTTGAATCTTTGTTTTTCCATTCTTTTTGTTAAATCCTTTATTCCATTTTTTTTTTGTTGAAGCTTTGCTGTTCTATTTTTTTTGTTGAACCTTTGCTGGTTTTTTTTTTTTGAATCTTTGCTTCTTTTTTGTTCAATCCTTTGTTTCATTTTTTTTGTTGAATCTCTGCTAAGGTTTTTTTTTGTGTATTTTTTTCATGCATCTTTATCTTTGTTATAAGATTTTATGGGCGGATCTATGTTTTTTTTTTAAAATTTTTTAATCCTTTGTTTGTTCTAATTATTTTTGTTCTTTCCATTTGTTTTGTTTGTTCGATCTTATATGATTCTTTTGTGTTTCTTTTTTTATCTGCCTTTTTTCCCTTCTTGTTTTGTAAATACAATTTTTGTTTTTTTAATTTTTGGAGATACTATTCTATTTAATTCTTTTTTTTTCTATTACCAGATCTGAAAATTTTTTGGATAGAAATGATATTGCAAATCATGCAGTGGCTTGCCTTATTTTGCAGATGTCAAGAACAAGGATTTATGGAAGTTCCTACGGTATCTACTCCAAGAAAGAGAAGTTGGAGCTTGAAGGTGATCAATACAAGTGTAAGTTATATCTACACTTAGTTTCTCTTTTGGATTTTTTTTTTCATGATGACTAACTTAATTTTGTGATGTTTCTTTTTTGTGTCTACCCTTTGAAAATACATCGCAATTTTAGTTAAGGCACAAAAACGATGCTCCTAACCCATTTTTCACTTACGAATCTAATAATAATGATCTAACATTATATTTCATGTGTGCATTGCATTAACATTATATTGATCTTGAATTTTTAGTTATGTGAAGCTTAGATGTTCATTAACCATTTATTTTAAAACATCAAACTTTAATTTTTTATTCATTTGCAATTGTGGAACATTTTGGTTATCTGTTTGTTTTAAAACATCAAGTTTTGATATTTTGATTACTTTTCTAAATCAAAGTTTATAAATAAGTTTGTGTAGTCTTAGTGTTTGAGTTTTAAAATATTTTGGTACCTTGATTTGTTTATTTGTTAGTTGAGAAATTTAATTTTGACAAAACTGATTTGATAGTGGATAAAACTGATTTGATAGTGTTGACAATTTGATAGTGGATAATAGTTGAGAAAGATTTAAATTTAGAAATCTTTTTTTTTTATTTATATATAGGATAGTTGTATTTGTATTAAAAAAATTTAATGCTTGCTTTTGGGAGTTGAGGCATTTAATTTTTTGAAAATCTTAATTTTATTTTATTTGTATATAATACATAGTAATTATTATTTTTTTCATTTATCAATGGTGGTTGAGTGATTTGAAAGGAAAAATTTATTAGTTCACACTCATTTGTTTTAAATAGAGCATTTCTCCCTCATTTCTAAACACACAACCTCTTTGTTTTGTTTCTAAAATTTACTTTTTTTGAGGTTGAGGTCATAACATGCTCCCATATGTTTGAGTGGTAACTATTTTACATTTATTTTATATAGACTTTGTTTTATATATATATATATTTTTTTTTTCTTATACTATTATTTTTCTTCTTTTTCCATTGTTCATTGATATTTTATTTGGGTATGTATATTTTACTTTGTTAATGTAGATTTTTCTTTTTACTTTGTTAATGTGGTTTTTACTTTGTTTTCCAACTATCAAGAAGTAAGCTGAATTATATTAGTTCCACTTATCTCATCTCATTGACGGTTTTTTTTTTTTTTGTAGGTTTGTCTTAGCCTTGCCTTGCATAGTCACACCATCACGTAATGTGCTCTTTTCTTTCCTACATTTGTATATGGACTTTTGTGTTTTTTATTTCTTTGTTAGTACATTCATGTTTTGTATATTATGATTGTGTTATATTTGTCAAATTATTTAGTTTAACTTTTAAGAATACTATGAAATTTAATTTGTAATATTATTTTTTCATTTTTAAGTTAATTTATATTGTTCATTTGTTGTGATAAAATATAAGGGTTACACATGTTTTTTTATGAACAAAAAAGTCACTTAAAACAATACCAATAATTCTGATTATTTTATAGAAACAAATGGGATGAGTATTACTTTTTCTTAACCTAAACAAATGATTGATGCGATATTTGCTAGTTATATAAAGATTTATACAAAATTGAATTTTAAAAATGATTGGCTTTAACCTATTTTAAAAAATCAAAAATATATTATAAAATTTAATATTTAATTTTAGAAAACTGATATGTCATAAAAAAAGATTAAAGAAGAAATCAAATTTATTACTGTGATTTTTGTAAATGAAAGGTAAATTAACAACTTATTATTAACTTCTAAAACGTTGATAAATTTGTAACAAAGCAATATGTTAAAACTTTTGTTTGTAAATTATTAAAAAAAGATAATCTACAAAGCAAGTTTTTTTTTTCTTTTTTTTTTAAAGATATCATTGTCTTTTCTAAAATCAAAACTAAATAACAAAAAAAAACTTGTTTTACTTCATAACTAAATTAAGTTACATAAATTGAGAAAACGAAAACAATTTCTTAAAACTTTTGTTTTTAAGAAAATAATCGTAAAATAAGATAATCTAGTATCTTTTAAAGCAATTCTAAATTAAAATTAAGTAAATCTCACAATTTATTTTAAAAGACATCATTGTCCTTATTTTTAAAATCAAAACTAAGTCAAGAAAATTTACAAACTTCATAGCTAAATTATATAGATAATGAGTTACATAATTAAAAAGCAAAAATAATTATTTAAAATTTTTGTTTTTAAGAAAATAAATTGTAAAGATAATGCTAAATTAAAATCAATTAAGACACCATTGGCTTTTCTAAAATTAAAACTAAATCAAGAAAAATTTTAAAATTCATAACGAAATTAGATAGAACAAAGAGTTAATTAATTAAAAAAAAAAGCAAAAGCAATTTTTTAAAACTTTTTTTTCGAAGAAACAATTGTAAAAGAAAATAATCTTGTATTCTTTTTAAAAAGCAATGCTAAATTAAAATCAAGTAAGTCTCACAATTTTGTTTACATAATTAAAAAAAAAACAAAAAAACCTCGTGTACTAGGAACTCAATTGTGTTTGTTTTGTCAGGAACTTATCGTTAATTTAAGTACTAAAATAGCATGGACATAGAACCAAACGAGTTGATTGCAATACTTACTATCATTTTCACAACACAACAACAATGGATGCTAATGTTCAATATGATAATGAGACTTGGAGACAAAAGAATAGAAAACCAATCACCACACCTAAGATACCAAATTAGGCAACTTAACTTTTTTCGTCTAATTCATGAAAGTGATATAGCTTGTCGAGAGAGTACACAGATGGATCGAAGATGTTTTACTATCTTGTGTACTATGTTAAGAACAAGAAAGGGATTAGAAGCCACTCAATATGTGGATGTTGAAGAGATGGTTGCGATTTTTTTGCATATTGTAGCACACGATGTTAAGAATAGGGTAGCTCGACGACATTGTGCAAGGTCTGGTGAAACAGTGTCAAGACACTTCAATGCTGTTCTTAACGCAGTTCTTAGACTCCATGAAATCCTTCTTAAGCAACCTGATCCAGTGACCCATTCATGTTCGCATGAGAAGTGGCGATGGTTTCAGGTATATAATCGGCCCGCCACTACTTTACAGTGGATATGTGCTTCTGTGAATTGACGAATAAAATGTTTTTTGCCCCTTGACAGAATTGTCTAGGTGCATTAGATGGTACACACATCAAAGTGAATGTAAGTATGAGTGATTGTCCAAGGTATAGGTTTAGAAAGGGTGACATTACCACAAATGTACTTGGTGTGTGTTCGTAAAATGATGAGTTCGTATTTGTCATGCCTGAATGGGAAGAGTCTGCATCTGATTCGAGAGTACTTAGAGATGCAGTGTCACGACCTACTGGTCTAAAAGTCCCAAAGGGTAAGATGATGCATTTTCTTCTCCCCACACAGTGGTGTTATACCATATGCTCATTTAATATGGTGTACCCTAATAATTCATTATGGGTACAACATGGGAAGGTTACTACTACTTGTGTGATGCTGGTTATCCAAATGTTGAAGGATTCCTCGCTTCATACTGAGATCAACGTTACCATCTAACCGAATGGCCTGGAGGAAACCCACCAAAATGCCCGAAAGAGCTATTTAACATGAGGCATTCCTCTGCTAGAAACGTTATTGAAAGGGCATTTGGATCATTGAAGGGTCGGTGGGCCATTCTACGAGGGAGATCTTATTACCCCGTTAACATACAATGTAAAATAATAACAGCATGTTGCCTCTTACATAACTTGATACATAGAGAAATGGGTTCAGAGGCAACATTTGAAGAGCCACATCTTGGTGAAGGTGATTCAAGCGAGATGAACATTGAGAATATAAACTTCGTGGAAACAACTAATGTCTGGACTGAATGAAGGGATAATCTTGCAAACCAAATGTTTGAGGATTGGAATAATGTATGACTAATATATGTAGTTTAGTTTCCTATATAATTTTGTTTTATCACATGATCTGTACTTGAACTATATTTTTTTTGTGTAATTGGAGTCAGAAATACATAGGGTTTCCTCTAAATTATGAGAACTAAGTTGTCTATATGTCAATCTATAGATTTTGTATTCATTGACTTTTATAATATTCATGTACTAATTTAGATGGCATCGACAAATTCAAAAGCCACTAAGCATCGGTGGACAACCATTGAGGATGAGGTGTTAGTTGAGTGCTTACTACAACTAGTGGAGGAAGGTGGCTGGAGGGCTGATAATGGAACATTCAAACTGGGATATTTGGTATAAGTACAAAAACTAATGAAAGAAAAAATTCCTGGAAGCAACATACAAGTGACTCCAAATTTAGAGTCGAGAGTAAAAATTTTAAAGAAGCAGTACACTGCCATAGCAGAGATGATGGGGCCAGCTTGTAGTGGGTTTGGCTGAAATGAGGGACAAAAGTGCATTGAGGCAGAGAAACCCGTGTTCGATGATTGGGTTAAGGTAAGAAGATGAATATAATTCATACTTTCTATAAAAGTAAAATATAATATACTTATATATGTTAACTCCATGTAGGGACACCCCAATGCTCAAGGCCTACTAAATAAACCATTTCCTTACTTCTATGACTTGGAAGTTGTGTTTGGTAGAGATAGGGCTACTGGTGGTAGATGTAAGACACCTGTTGAAATGAGCTCACAGACTGCAAGAGATACTGAGGAAGATGACATGGACATTAATCTTGAAGACTTTGATATTCCAAATCCACATGGACTCGAGCCACCTTCGGGGGAGGACATGCCATCTACTCCAACAAGTATGGCGCATGATGCGGGATCATCTAGGCCAAGTAAGAAAAGACGATCATATTCAGGAGACCTTATGGACACGTTTCGCGCAAGTATGCGAGAAACTTCCAAGGAAATTGGAAAGATTGCTACATGGCAGAGAGAAAAAATGGAAATAGAATCATCCCTACACAAACGATTATATGCTGAATTACAGACTATTCCTGGAATGGACGTGGATGATTGTTTAATTGTAGCCGAGTCTCTATTACCTGATCCCACGATGTTGCACGCATTCCTTGACTACCCAGCAGAATGGAAGTATAGAAAATGCATGCGTATTTTAGGAAGGCAACCATAA

mRNA sequence

GTTTATCCTCTATGTTAATGTCAAGCCCACGTTTGGCTCACGGTCTAAAACAATGGGATTAAGAGAGGGGGTAAATAGGCGGTTTAATTTTTTTACAAAAAAAAAAAAGAAAAAAACCTTTCTCCTCCTAATTTCTTCTCAATCTTTCATAGTCTCTCTCATCTCTTCTTCTTCGCGCATCAAACCCTAGTCGCTCTTGATCTCCTTGCGTCTTCATCTCTTCTAATTTCTCTTCTGTCTCTTTTTCTTTTTCTCATACAAAGAAGCAAGATGTCAAGAACAAGGATTTATGGAAGTTCCTACGGTATCTACTCCAAGAAAGAGAAGTTGGAGCTTGAAGGTGATCAATACAAGTGTTTGTCTTAGCCTTGCCTTGCATAGTCACACCATCACATGGCATCGACAAATTCAAAAGCCACTAAGCATCGGTGGACAACCATTGAGGATGAGGTGTTAGTTGAGTGCTTACTACAACTAGTGGAGGAAGGTGGCTGGAGGGCTGATAATGGAACATTCAAACTGGGATATTTGGTATAAGTACAAAAACTAATGAAAGAAAAAATTCCTGGAAGCAACATACAAGTGACTCCAAATTTAGAGTCGAGAGTAAAAATTTTAAAGAAGCAGTACACTGCCATAGCAGAGATGATGGGGCCAGCTTGTAGTGGGTTTGGCTGAAATGAGGGACAAAAGTGCATTGAGGCAGAGAAACCCGTGTTCGATGATTGGGTTAAGGGACACCCCAATGCTCAAGGCCTACTAAATAAACCATTTCCTTACTTCTATGACTTGGAAGTTGTGTTTGGTAGAGATAGGGCTACTGGTGGTAGATGTAAGACACCTGTTGAAATGAGCTCACAGACTGCAAGAGATACTGAGGAAGATGACATGGACATTAATCTTGAAGACTTTGATATTCCAAATCCACATGGACTCGAGCCACCTTCGGGGGAGGACATGCCATCTACTCCAACAAGTATGGCGCATGATGCGGGATCATCTAGGCCAAGTAAGAAAAGACGATCATATTCAGGAGACCTTATGGACACGTTTCGCGCAAGTATGCGAGAAACTTCCAAGGAAATTGGAAAGATTGCTACATGGCAGAGAGAAAAAATGGAAATAGAATCATCCCTACACAAACGATTATATGCTGAATTACAGACTATTCCTGGAATGGACGTGGATGATTGTTTAATTGTAGCCGAGTCTCTATTACCTGATCCCACGATGTTGCACGCATTCCTTGACTACCCAGCAGAATGGAAGTATAGAAAATGCATGCGTATTTTAGGAAGGCAACCATAA

Coding sequence (CDS)

ATGAGCTCACAGACTGCAAGAGATACTGAGGAAGATGACATGGACATTAATCTTGAAGACTTTGATATTCCAAATCCACATGGACTCGAGCCACCTTCGGGGGAGGACATGCCATCTACTCCAACAAGTATGGCGCATGATGCGGGATCATCTAGGCCAAGTAAGAAAAGACGATCATATTCAGGAGACCTTATGGACACGTTTCGCGCAAGTATGCGAGAAACTTCCAAGGAAATTGGAAAGATTGCTACATGGCAGAGAGAAAAAATGGAAATAGAATCATCCCTACACAAACGATTATATGCTGAATTACAGACTATTCCTGGAATGGACGTGGATGATTGTTTAATTGTAGCCGAGTCTCTATTACCTGATCCCACGATGTTGCACGCATTCCTTGACTACCCAGCAGAATGGAAGTATAGAAAATGCATGCGTATTTTAGGAAGGCAACCATAA

Protein sequence

MSSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKRRSYSGDLMDTFRASMRETSKEIGKIATWQREKMEIESSLHKRLYAELQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRILGRQP
Homology
[Close]
BLAST of Cmc01g0014101 vs. NCBI nr
Match: KAA0065306.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 295.0 bits (754), Expect = 3.6e-76
Identity = 145/152 (95.39%), Postives = 146/152 (96.05%), Query Frame = 0 

Query: 1   MSSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKRRSY 60
           + SQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAG  RPSKKRR Y
Sbjct: 396 IGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGLCRPSKKRRPY 455

Query: 61  SGDLMDTFRASMRETSKEIGKIATWQREKMEIESSLHKRLYAELQTIPGMDVDDCLIVAE 120
           SGDLMDTFRASMRETSKEIGKIA WQREKMEIESSLHKRLY ELQTIPGMDVDDCLIVAE
Sbjct: 456 SGDLMDTFRASMRETSKEIGKIAAWQREKMEIESSLHKRLYTELQTIPGMDVDDCLIVAE 515

Query: 121 SLLPDPTMLHAFLDYPAEWKYRKCMRILGRQP 153
           SLLPDPTMLHAFLDYPAEWKYRKCMRILGRQP
Sbjct: 516 SLLPDPTMLHAFLDYPAEWKYRKCMRILGRQP 547

[Close]
BLAST of Cmc01g0014101 vs. NCBI nr
Match: KAA0050106.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 294.3 bits (752), Expect = 6.1e-76
Identity = 144/149 (96.64%), Postives = 146/149 (97.99%), Query Frame = 0 

Query: 4   QTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKRRSYSGD 63
           +TARD EEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKRRSYSGD
Sbjct: 113 KTARDIEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKRRSYSGD 172

Query: 64  LMDTFRASMRETSKEIGKIATWQREKMEIESSLHKRLYAELQTIPGMDVDDCLIVAESLL 123
           LMDTFRASMRETSKEIGKIA WQREKMEIESSLHKRLY +LQTIPGMDVDDCLIVAESLL
Sbjct: 173 LMDTFRASMRETSKEIGKIAAWQREKMEIESSLHKRLYVDLQTIPGMDVDDCLIVAESLL 232

Query: 124 PDPTMLHAFLDYPAEWKYRKCMRILGRQP 153
           PDPTMLHAFLDYPAEWKYRKCMRILGRQP
Sbjct: 233 PDPTMLHAFLDYPAEWKYRKCMRILGRQP 261

[Close]
BLAST of Cmc01g0014101 vs. NCBI nr
Match: TYK07921.1 (hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 269.6 bits (688), Expect = 1.6e-68
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0 

Query: 1   MSSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKRRSY 60
           MSSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSM HDAGSSRPSKKRRSY
Sbjct: 260 MSSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMTHDAGSSRPSKKRRSY 319

Query: 61  SGDLMDTFRASMRETSKEIGKIATWQREKMEIESSLHKRLYAELQTIPGMDVDDCLIVAE 120
           SGDLMDTFRASMRETSKEIGKIATWQREKMEIESSLHKRLYAELQTIPGMDVDDCLIVAE
Sbjct: 320 SGDLMDTFRASMRETSKEIGKIATWQREKMEIESSLHKRLYAELQTIPGMDVDDCLIVAE 379

Query: 121 SLLPDPTMLHAFLDYP 137
           SLLPDPTMLHAFLDYP
Sbjct: 380 SLLPDPTMLHAFLDYP 395

[Close]
BLAST of Cmc01g0014101 vs. NCBI nr
Match: XP_008460440.1 (PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo])

HSP 1 Score: 246.9 bits (629), Expect = 1.1e-61
Identity = 124/137 (90.51%), Postives = 126/137 (91.97%), Query Frame = 0 

Query: 1   MSSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKRRSY 60
           M  Q ARDTEEDDMDINLEDFDIPNPHGLEPPSGEDM STPTSMAHD GSS+PSKKRRSY
Sbjct: 68  MGLQIARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMSSTPTSMAHDVGSSKPSKKRRSY 127

Query: 61  SGDLMDTFRASMRETSKEIGKIATWQREKMEIESSLHKRLYAELQTIPGMDVDDCLIVAE 120
           S DLMDTFRASMRETSKEI KIA WQREKMEIESS+HKRLYAELQTIPGMDVDDCLIV E
Sbjct: 128 SEDLMDTFRASMRETSKEIRKIAAWQREKMEIESSIHKRLYAELQTIPGMDVDDCLIVVE 187

Query: 121 SLLPDPTMLHAFLDYPA 138
           SLLPDP MLH FLDYPA
Sbjct: 188 SLLPDPIMLHTFLDYPA 204

[Close]
BLAST of Cmc01g0014101 vs. NCBI nr
Match: KAA0067273.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 246.9 bits (629), Expect = 1.1e-61
Identity = 124/137 (90.51%), Postives = 126/137 (91.97%), Query Frame = 0 

Query: 1   MSSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKRRSY 60
           M  Q ARDTEEDDMDINLEDFDIPNPHGLEPPSGEDM STPTSMAHD GSS+PSKKRRSY
Sbjct: 69  MGLQIARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMSSTPTSMAHDVGSSKPSKKRRSY 128

Query: 61  SGDLMDTFRASMRETSKEIGKIATWQREKMEIESSLHKRLYAELQTIPGMDVDDCLIVAE 120
           S DLMDTFRASMRETSKEI KIA WQREKMEIESS+HKRLYAELQTIPGMDVDDCLIV E
Sbjct: 129 SEDLMDTFRASMRETSKEIRKIAAWQREKMEIESSIHKRLYAELQTIPGMDVDDCLIVVE 188

Query: 121 SLLPDPTMLHAFLDYPA 138
           SLLPDP MLH FLDYPA
Sbjct: 189 SLLPDPIMLHTFLDYPA 205

[Close]
BLAST of Cmc01g0014101 vs. ExPASy TrEMBL
Match: A0A5A7VG45 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00220 PE=3 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 1.7e-76
Identity = 145/152 (95.39%), Postives = 146/152 (96.05%), Query Frame = 0 

Query: 1   MSSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKRRSY 60
           + SQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAG  RPSKKRR Y
Sbjct: 396 IGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGLCRPSKKRRPY 455

Query: 61  SGDLMDTFRASMRETSKEIGKIATWQREKMEIESSLHKRLYAELQTIPGMDVDDCLIVAE 120
           SGDLMDTFRASMRETSKEIGKIA WQREKMEIESSLHKRLY ELQTIPGMDVDDCLIVAE
Sbjct: 456 SGDLMDTFRASMRETSKEIGKIAAWQREKMEIESSLHKRLYTELQTIPGMDVDDCLIVAE 515

Query: 121 SLLPDPTMLHAFLDYPAEWKYRKCMRILGRQP 153
           SLLPDPTMLHAFLDYPAEWKYRKCMRILGRQP
Sbjct: 516 SLLPDPTMLHAFLDYPAEWKYRKCMRILGRQP 547

[Close]
BLAST of Cmc01g0014101 vs. ExPASy TrEMBL
Match: A0A5A7U7F7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001200 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 3.0e-76
Identity = 144/149 (96.64%), Postives = 146/149 (97.99%), Query Frame = 0 

Query: 4   QTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKRRSYSGD 63
           +TARD EEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKRRSYSGD
Sbjct: 113 KTARDIEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKRRSYSGD 172

Query: 64  LMDTFRASMRETSKEIGKIATWQREKMEIESSLHKRLYAELQTIPGMDVDDCLIVAESLL 123
           LMDTFRASMRETSKEIGKIA WQREKMEIESSLHKRLY +LQTIPGMDVDDCLIVAESLL
Sbjct: 173 LMDTFRASMRETSKEIGKIAAWQREKMEIESSLHKRLYVDLQTIPGMDVDDCLIVAESLL 232

Query: 124 PDPTMLHAFLDYPAEWKYRKCMRILGRQP 153
           PDPTMLHAFLDYPAEWKYRKCMRILGRQP
Sbjct: 233 PDPTMLHAFLDYPAEWKYRKCMRILGRQP 261

[Close]
BLAST of Cmc01g0014101 vs. ExPASy TrEMBL
Match: A0A5D3C7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00330 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 7.8e-69
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0 

Query: 1   MSSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKRRSY 60
           MSSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSM HDAGSSRPSKKRRSY
Sbjct: 260 MSSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMTHDAGSSRPSKKRRSY 319

Query: 61  SGDLMDTFRASMRETSKEIGKIATWQREKMEIESSLHKRLYAELQTIPGMDVDDCLIVAE 120
           SGDLMDTFRASMRETSKEIGKIATWQREKMEIESSLHKRLYAELQTIPGMDVDDCLIVAE
Sbjct: 320 SGDLMDTFRASMRETSKEIGKIATWQREKMEIESSLHKRLYAELQTIPGMDVDDCLIVAE 379

Query: 121 SLLPDPTMLHAFLDYP 137
           SLLPDPTMLHAFLDYP
Sbjct: 380 SLLPDPTMLHAFLDYP 395

[Close]
BLAST of Cmc01g0014101 vs. ExPASy TrEMBL
Match: A0A5A7VGQ0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00930 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 5.4e-62
Identity = 124/137 (90.51%), Postives = 126/137 (91.97%), Query Frame = 0 

Query: 1   MSSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKRRSY 60
           M  Q ARDTEEDDMDINLEDFDIPNPHGLEPPSGEDM STPTSMAHD GSS+PSKKRRSY
Sbjct: 69  MGLQIARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMSSTPTSMAHDVGSSKPSKKRRSY 128

Query: 61  SGDLMDTFRASMRETSKEIGKIATWQREKMEIESSLHKRLYAELQTIPGMDVDDCLIVAE 120
           S DLMDTFRASMRETSKEI KIA WQREKMEIESS+HKRLYAELQTIPGMDVDDCLIV E
Sbjct: 129 SEDLMDTFRASMRETSKEIRKIAAWQREKMEIESSIHKRLYAELQTIPGMDVDDCLIVVE 188

Query: 121 SLLPDPTMLHAFLDYPA 138
           SLLPDP MLH FLDYPA
Sbjct: 189 SLLPDPIMLHTFLDYPA 205

[Close]
BLAST of Cmc01g0014101 vs. ExPASy TrEMBL
Match: A0A1S3CC17 (uncharacterized protein LOC103499248 OS=Cucumis melo OX=3656 GN=LOC103499248 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 5.4e-62
Identity = 124/137 (90.51%), Postives = 126/137 (91.97%), Query Frame = 0 

Query: 1   MSSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKRRSY 60
           M  Q ARDTEEDDMDINLEDFDIPNPHGLEPPSGEDM STPTSMAHD GSS+PSKKRRSY
Sbjct: 68  MGLQIARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMSSTPTSMAHDVGSSKPSKKRRSY 127

Query: 61  SGDLMDTFRASMRETSKEIGKIATWQREKMEIESSLHKRLYAELQTIPGMDVDDCLIVAE 120
           S DLMDTFRASMRETSKEI KIA WQREKMEIESS+HKRLYAELQTIPGMDVDDCLIV E
Sbjct: 128 SEDLMDTFRASMRETSKEIRKIAAWQREKMEIESSIHKRLYAELQTIPGMDVDDCLIVVE 187

Query: 121 SLLPDPTMLHAFLDYPA 138
           SLLPDP MLH FLDYPA
Sbjct: 188 SLLPDPIMLHTFLDYPA 204

The following BLAST results are available for this feature:
BLAST of Cmc01g0014101 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0065306.13.6e-7695.39retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0050106.16.1e-7696.64retrotransposon protein [Cucumis melo var. makuwa][more]
TYK07921.11.6e-6899.26hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa][more]
XP_008460440.11.1e-6190.51PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo][more]
KAA0067273.11.1e-6190.51retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of Cmc01g0014101 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc01g0014101 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VG451.7e-7695.39Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U7F73.0e-7696.64Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3C7T47.8e-6999.26Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VGQ05.4e-6290.51Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S3CC175.4e-6290.51uncharacterized protein LOC103499248 OS=Cucumis melo OX=3656 GN=LOC103499248 PE=... [more]
BLAST of Cmc01g0014101 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc01g0014101.1Cmc01g0014101.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034470 ncRNA processing
biological_process GO:0001510 RNA methylation
cellular_component GO:0005634 nucleus
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0003676 nucleic acid binding