Cmc01g0013801 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0013801
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Transcription initiation factor TFIID subunit 6-like
Location	CMiso1.1chr01: 10595324 .. 10596394 (+)
RNA-Seq Expression	Cmc01g0013801
Synteny	Cmc01g0013801

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTACAATCACCTGAATGCAACTTTTAACTTTCAAAGGAGATGACCCGAGAACGGAAAATAGAACAAAGGTAATCAATGGCAATCACTAGTACAAGAGTGATGAGTGGTTCAAGGGCCCGAGTGAAAACCAACTGAAGTTATTGAAATGAAGAGAGAAAAGGAAACGGAGGGATGTCTGTTTAGTTTTGTTTCATTTATTACAACTTTGTAAGGTTCAAGTTTAAATATAACTGTCTAAGTTTGGTTATTCTAAGAATTTGCTTGAGGTTTTATGATATTCAGTCTAACAATTTCCGCAAATGCTGAATCACTTGTGTGATCTTTGTGCAATTATGCAATTTTTTCTGTTCTATTGGTTATGTAGGATTCTGCTAATGGTCAAAGGCAACCATGTTTAGATTTATTTTAATATTTCCTAAAGGAAGAAGGAATTGGATGTACTATTTCTTTAATGTTTCTTCCTCCTTCCTGTATTCTTCAGTTGTTGCAACCCAAGTTATTTAGTAATTAACCTCTGTTGTATCTTTCCCTTCTACAGTAATTTTACCACCTTTTGATGCCAAAAGTAGTGAACAAAAGAATGAGGTTCCAGTTGACATCAAATTACCAGTGAAACATATACTTTCCAAGGAACTTCAGGTAAATGACTTCTTATTGGCCTATATTTTTCTATTAAAGTTTAATTAATTGATATCTAACCTACACGTTTCCAAACATTATTTGCAGCTTTATTTTGACAAAATCACAAAGCTTGTTGTTCGTAGATCCAGTAGGACCTTTTTAAGAAGGCATTAGTGAGTTTAGCTATGGACTCGGGACTTCACCCATTGGTTCCTTATTTTACGTGTTATATAGCTGATGAGGTATAAATTTTGAGCACAAGAGATCTCTATAGATTGGATTAGAATTTCTTGAGATATTTTATTTTAAATTTAATGTTGTTGATTCTCTAAAGATATCAGCTGGTTGCTCGTGGACCGGGTGATTATTCCCTTCTTTTTGCTTTTATGCATGTCGTTTGTAGTCTTCTTCAGAACCTTCATATCCACATTGAACCTTGTGTAAGTTGA

mRNA sequence

ATTACAATCACCTGAATGCAACTTTTAACTTTCAAAGGAGATGACCCGAGAACGGAAAATAGAACAAAGTAATTTTACCACCTTTTGATGCCAAAAGTAGTGAACAAAAGAATGAGGTTCCAGTTGACATCAAATTACCAGTGAAACATATACTTTCCAAGGAACTTCAGCTTTATTTTGACAAAATCACAAAGCTTGTTGTTCGTAGATCCAGTAGGACCTTTTTAAGAAGGCATTAGTGAGTTTAGCTATGGACTCGGGACTTCACCCATTGGTTCCTTATTTTACGTGTTATATAGCTGATGAGCTGGTTGCTCGTGGACCGGGTGATTATTCCCTTCTTTTTGCTTTTATGCATGTCGTTTGTAGTCTTCTTCAGAACCTTCATATCCACATTGAACCTTGTGTAAGTTGA

Coding sequence (CDS)

ATGGACTCGGGACTTCACCCATTGGTTCCTTATTTTACGTGTTATATAGCTGATGAGCTGGTTGCTCGTGGACCGGGTGATTATTCCCTTCTTTTTGCTTTTATGCATGTCGTTTGTAGTCTTCTTCAGAACCTTCATATCCACATTGAACCTTGTGTAAGTTGA

Protein sequence

MDSGLHPLVPYFTCYIADELVARGPGDYSLLFAFMHVVCSLLQNLHIHIEPCVS

Homology

[Close]

BLAST of Cmc01g0013801 vs. NCBI nr
Match: XP_008455502.1 (PREDICTED: transcription initiation factor TFIID subunit 6-like [Cucumis melo] >XP_016901765.1 PREDICTED: transcription initiation factor TFIID subunit 6-like [Cucumis melo] >XP_016901766.1 PREDICTED: transcription initiation factor TFIID subunit 6-like [Cucumis melo] >KAA0059113.1 transcription initiation factor TFIID subunit 6-like [Cucumis melo var. makuwa] >TYK21618.1 transcription initiation factor TFIID subunit 6-like [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 1.1e-14
Identity = 44/50 (88.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 2   DSGLHPLVPYFTCYIADELVARGPGDYSLLFAFMHVVCSLLQNLHIHIEP 52
           DSGLHPLVPYFTCYIADE VARG GDYSLLFA M VV SLLQN HIHIEP
Sbjct: 204 DSGLHPLVPYFTCYIADE-VARGLGDYSLLFALMRVVWSLLQNPHIHIEP 252

[Close]

BLAST of Cmc01g0013801 vs. NCBI nr
Match: XP_038887949.1 (transcription initiation factor TFIID subunit 6-like isoform X1 [Benincasa hispida])

HSP 1 Score: 89.4 bits (220), Expect = 1.1e-14
Identity = 44/50 (88.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 2   DSGLHPLVPYFTCYIADELVARGPGDYSLLFAFMHVVCSLLQNLHIHIEP 52
           DSGLHPLVPYFTCYIADE VARG GDYSLLFA M VV SLLQN HIHIEP
Sbjct: 204 DSGLHPLVPYFTCYIADE-VARGLGDYSLLFALMRVVWSLLQNPHIHIEP 252

[Close]

BLAST of Cmc01g0013801 vs. NCBI nr
Match: XP_038887950.1 (transcription initiation factor TFIID subunit 6-like isoform X2 [Benincasa hispida] >XP_038887951.1 transcription initiation factor TFIID subunit 6-like isoform X2 [Benincasa hispida])

HSP 1 Score: 89.4 bits (220), Expect = 1.1e-14
Identity = 44/50 (88.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 2   DSGLHPLVPYFTCYIADELVARGPGDYSLLFAFMHVVCSLLQNLHIHIEP 52
           DSGLHPLVPYFTCYIADE VARG GDYSLLFA M VV SLLQN HIHIEP
Sbjct: 157 DSGLHPLVPYFTCYIADE-VARGLGDYSLLFALMRVVWSLLQNPHIHIEP 205

[Close]

BLAST of Cmc01g0013801 vs. NCBI nr
Match: XP_031744913.1 (transcription initiation factor TFIID subunit 6 [Cucumis sativus] >KGN43460.1 hypothetical protein Csa_020238 [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 1.1e-14
Identity = 44/50 (88.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 2   DSGLHPLVPYFTCYIADELVARGPGDYSLLFAFMHVVCSLLQNLHIHIEP 52
           DSGLHPLVPYFTCYIADE VARG GDYSLLFA M VV SLLQN HIHIEP
Sbjct: 204 DSGLHPLVPYFTCYIADE-VARGLGDYSLLFALMRVVWSLLQNPHIHIEP 252

[Close]

BLAST of Cmc01g0013801 vs. NCBI nr
Match: XP_022930656.1 (transcription initiation factor TFIID subunit 6-like [Cucurbita moschata])

HSP 1 Score: 87.8 bits (216), Expect = 3.1e-14
Identity = 43/50 (86.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 2   DSGLHPLVPYFTCYIADELVARGPGDYSLLFAFMHVVCSLLQNLHIHIEP 52
           DSGLHPLVPYFTC+IADE VARG GDYSLLFA M VV SLLQN HIHIEP
Sbjct: 204 DSGLHPLVPYFTCFIADE-VARGLGDYSLLFALMRVVWSLLQNPHIHIEP 252

[Close]

BLAST of Cmc01g0013801 vs. ExPASy Swiss-Prot
Match: Q9MAU3 (Transcription initiation factor TFIID subunit 6 OS=Arabidopsis thaliana OX=3702 GN=TAF6 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 4.6e-13
Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = 0


Query: 2   DSGLHPLVPYFTCYIADELVARGPGDYSLLFAFMHVVCSLLQNLHIHIEP 52
           DSGLHPLVPYFT +IADE V+ G  D+ LLF  MH+V SLLQN HIHIEP
Sbjct: 204 DSGLHPLVPYFTNFIADE-VSNGLNDFRLLFNLMHIVRSLLQNPHIHIEP 252

[Close]

BLAST of Cmc01g0013801 vs. ExPASy Swiss-Prot
Match: F4HVA6 (Transcription initiation factor TFIID subunit 6b OS=Arabidopsis thaliana OX=3702 GN=TAF6B PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 9.1e-09
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 1   MDSGLHPLVPYFTCYIADELVARGPGDYSLLFAFMHVVCSLLQNLHIHIEP 52
           +D GLHPLVP+FT +IA+E+V +   +Y +L A M +  SLL N H+HIEP
Sbjct: 213 IDPGLHPLVPFFTSFIAEEIV-KNMDNYPILLALMRLARSLLHNPHVHIEP 262

[Close]

BLAST of Cmc01g0013801 vs. ExPASy Swiss-Prot
Match: O74462 (Transcription initiation factor TFIID subunit 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=taf6 PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 3.0e-04
Identity = 21/52 (40.38%), Postives = 32/52 (61.54%), Query Frame = 0


Query: 2   DSGLHPLVPYFTCYIADELVARGPGDYSLLFAFMHVVCSLLQNLHIHIEPCV 54
           D GLH L+PYF  +++D  V R  G+  +L   MH+  +LL N ++ +EP V
Sbjct: 226 DPGLHQLLPYFIMFLSDS-VTRNLGNLVVLTTLMHMAWALLDNPNLFVEPYV 276

[Close]

BLAST of Cmc01g0013801 vs. ExPASy Swiss-Prot
Match: P53040 (Transcription initiation factor TFIID subunit 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TAF6 PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 3.0e-04
Identity = 21/52 (40.38%), Postives = 32/52 (61.54%), Query Frame = 0


Query: 2   DSGLHPLVPYFTCYIADELVARGPGDYSLLFAFMHVVCSLLQNLHIHIEPCV 54
           DSGLH LVPYF  +IA++ + +   D  LL   + ++ SLL N  I ++P +
Sbjct: 258 DSGLHQLVPYFIQFIAEQ-ITQNLSDLQLLTTILEMIYSLLSNTSIFLDPYI 308

[Close]

BLAST of Cmc01g0013801 vs. ExPASy TrEMBL
Match: A0A1S3C124 (transcription initiation factor TFIID subunit 6-like OS=Cucumis melo OX=3656 GN=LOC103495654 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.1e-15
Identity = 44/50 (88.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 2   DSGLHPLVPYFTCYIADELVARGPGDYSLLFAFMHVVCSLLQNLHIHIEP 52
           DSGLHPLVPYFTCYIADE VARG GDYSLLFA M VV SLLQN HIHIEP
Sbjct: 204 DSGLHPLVPYFTCYIADE-VARGLGDYSLLFALMRVVWSLLQNPHIHIEP 252

[Close]

BLAST of Cmc01g0013801 vs. ExPASy TrEMBL
Match: A0A5A7UT52 (Transcription initiation factor TFIID subunit 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold150G00160 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.1e-15
Identity = 44/50 (88.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 2   DSGLHPLVPYFTCYIADELVARGPGDYSLLFAFMHVVCSLLQNLHIHIEP 52
           DSGLHPLVPYFTCYIADE VARG GDYSLLFA M VV SLLQN HIHIEP
Sbjct: 204 DSGLHPLVPYFTCYIADE-VARGLGDYSLLFALMRVVWSLLQNPHIHIEP 252

[Close]

BLAST of Cmc01g0013801 vs. ExPASy TrEMBL
Match: A0A0A0K1B8 (TAF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G037630 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.1e-15
Identity = 44/50 (88.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 2   DSGLHPLVPYFTCYIADELVARGPGDYSLLFAFMHVVCSLLQNLHIHIEP 52
           DSGLHPLVPYFTCYIADE VARG GDYSLLFA M VV SLLQN HIHIEP
Sbjct: 204 DSGLHPLVPYFTCYIADE-VARGLGDYSLLFALMRVVWSLLQNPHIHIEP 252

[Close]

BLAST of Cmc01g0013801 vs. ExPASy TrEMBL
Match: A0A1S4DXQ6 (transcription initiation factor TFIID subunit 6-like OS=Cucumis melo OX=3656 GN=LOC103491293 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.5e-14
Identity = 43/50 (86.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 2   DSGLHPLVPYFTCYIADELVARGPGDYSLLFAFMHVVCSLLQNLHIHIEP 52
           DSGLHPLVPYFTC+IADE VARG GDYSLLFA M VV SLLQN HIHIEP
Sbjct: 204 DSGLHPLVPYFTCFIADE-VARGLGDYSLLFALMRVVWSLLQNPHIHIEP 252

[Close]

BLAST of Cmc01g0013801 vs. ExPASy TrEMBL
Match: A0A6J1C1Y6 (transcription initiation factor TFIID subunit 6 OS=Momordica charantia OX=3673 GN=LOC111007529 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.5e-14
Identity = 43/50 (86.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 2   DSGLHPLVPYFTCYIADELVARGPGDYSLLFAFMHVVCSLLQNLHIHIEP 52
           DSGLHPLVPYFTC+IADE VARG GDYSLLFA M VV SLLQN HIHIEP
Sbjct: 204 DSGLHPLVPYFTCFIADE-VARGLGDYSLLFALMRVVWSLLQNPHIHIEP 252

[Close]

BLAST of Cmc01g0013801 vs. TAIR 10
Match: AT1G04950.1 (TATA BOX ASSOCIATED FACTOR II 59 )

HSP 1 Score: 74.3 bits (181), Expect = 3.3e-14
Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = 0


Query: 2   DSGLHPLVPYFTCYIADELVARGPGDYSLLFAFMHVVCSLLQNLHIHIEP 52
           DSGLHPLVPYFT +IADE V+ G  D+ LLF  MH+V SLLQN HIHIEP
Sbjct: 204 DSGLHPLVPYFTNFIADE-VSNGLNDFRLLFNLMHIVRSLLQNPHIHIEP 252

[Close]

BLAST of Cmc01g0013801 vs. TAIR 10
Match: AT1G04950.2 (TATA BOX ASSOCIATED FACTOR II 59 )

HSP 1 Score: 74.3 bits (181), Expect = 3.3e-14
Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = 0


Query: 2   DSGLHPLVPYFTCYIADELVARGPGDYSLLFAFMHVVCSLLQNLHIHIEP 52
           DSGLHPLVPYFT +IADE V+ G  D+ LLF  MH+V SLLQN HIHIEP
Sbjct: 204 DSGLHPLVPYFTNFIADE-VSNGLNDFRLLFNLMHIVRSLLQNPHIHIEP 252

[Close]

BLAST of Cmc01g0013801 vs. TAIR 10
Match: AT1G04950.3 (TATA BOX ASSOCIATED FACTOR II 59 )

HSP 1 Score: 74.3 bits (181), Expect = 3.3e-14
Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = 0


Query: 2   DSGLHPLVPYFTCYIADELVARGPGDYSLLFAFMHVVCSLLQNLHIHIEP 52
           DSGLHPLVPYFT +IADE V+ G  D+ LLF  MH+V SLLQN HIHIEP
Sbjct: 204 DSGLHPLVPYFTNFIADE-VSNGLNDFRLLFNLMHIVRSLLQNPHIHIEP 252

[Close]

BLAST of Cmc01g0013801 vs. TAIR 10
Match: AT1G54360.1 (TBP-ASSOCIATED FACTOR 6B )

HSP 1 Score: 60.1 bits (144), Expect = 6.4e-10
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 1   MDSGLHPLVPYFTCYIADELVARGPGDYSLLFAFMHVVCSLLQNLHIHIEP 52
           +D GLHPLVP+FT +IA+E+V +   +Y +L A M +  SLL N H+HIEP
Sbjct: 190 IDPGLHPLVPFFTSFIAEEIV-KNMDNYPILLALMRLARSLLHNPHVHIEP 239

[Close]

BLAST of Cmc01g0013801 vs. TAIR 10
Match: AT1G54360.2 (TBP-ASSOCIATED FACTOR 6B )

HSP 1 Score: 60.1 bits (144), Expect = 6.4e-10
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 1   MDSGLHPLVPYFTCYIADELVARGPGDYSLLFAFMHVVCSLLQNLHIHIEP 52
           +D GLHPLVP+FT +IA+E+V +   +Y +L A M +  SLL N H+HIEP
Sbjct: 213 IDPGLHPLVPFFTSFIAEEIV-KNMDNYPILLALMRLARSLLHNPHVHIEP 262

The following BLAST results are available for this feature:

BLAST of Cmc01g0013801 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455502.1	1.1e-14	88.00	PREDICTED: transcription initiation factor TFIID subunit 6-like [Cucumis melo] >...	[more]
XP_038887949.1	1.1e-14	88.00	transcription initiation factor TFIID subunit 6-like isoform X1 [Benincasa hispi...	[more]
XP_038887950.1	1.1e-14	88.00	transcription initiation factor TFIID subunit 6-like isoform X2 [Benincasa hispi...	[more]
XP_031744913.1	1.1e-14	88.00	transcription initiation factor TFIID subunit 6 [Cucumis sativus] >KGN43460.1 hy...	[more]
XP_022930656.1	3.1e-14	86.00	transcription initiation factor TFIID subunit 6-like [Cucurbita moschata]	[more]

BLAST of Cmc01g0013801 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9MAU3	4.6e-13	72.00	Transcription initiation factor TFIID subunit 6 OS=Arabidopsis thaliana OX=3702 ...	[more]
F4HVA6	9.1e-09	52.94	Transcription initiation factor TFIID subunit 6b OS=Arabidopsis thaliana OX=3702...	[more]
O74462	3.0e-04	40.38	Transcription initiation factor TFIID subunit 6 OS=Schizosaccharomyces pombe (st...	[more]
P53040	3.0e-04	40.38	Transcription initiation factor TFIID subunit 6 OS=Saccharomyces cerevisiae (str...	[more]

BLAST of Cmc01g0013801 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C124	5.1e-15	88.00	transcription initiation factor TFIID subunit 6-like OS=Cucumis melo OX=3656 GN=...	[more]
A0A5A7UT52	5.1e-15	88.00	Transcription initiation factor TFIID subunit 6-like OS=Cucumis melo var. makuwa...	[more]
A0A0A0K1B8	5.1e-15	88.00	TAF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G037630 PE=3 SV...	[more]
A0A1S4DXQ6	1.5e-14	86.00	transcription initiation factor TFIID subunit 6-like OS=Cucumis melo OX=3656 GN=...	[more]
A0A6J1C1Y6	1.5e-14	86.00	transcription initiation factor TFIID subunit 6 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Cmc01g0013801 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04950.1	3.3e-14	72.00	TATA BOX ASSOCIATED FACTOR II 59	[more]
AT1G04950.2	3.3e-14	72.00	TATA BOX ASSOCIATED FACTOR II 59	[more]
AT1G04950.3	3.3e-14	72.00	TATA BOX ASSOCIATED FACTOR II 59	[more]
AT1G54360.1	6.4e-10	52.94	TBP-ASSOCIATED FACTOR 6B	[more]
AT1G54360.2	6.4e-10	52.94	TBP-ASSOCIATED FACTOR 6B	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.25.40.770		coord: 1..54 e-value: 4.9E-10 score: 41.3
None	No IPR available	PANTHER	PTHR10221:SF13	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6	coord: 2..52
IPR037796	Transcription initiation factor TFIID subunit 6	PANTHER	PTHR10221	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6	coord: 2..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0013801.1	Cmc01g0013801.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0051123	RNA polymerase II preinitiation complex assembly
biological_process	GO:0006413	translational initiation
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
cellular_component	GO:0000124	SAGA complex
cellular_component	GO:0046695	SLIK (SAGA-like) complex
cellular_component	GO:0005669	transcription factor TFIID complex
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0016251	RNA polymerase II general transcription initiation factor activity
molecular_function	GO:0003713	transcription coactivator activity
molecular_function	GO:0003743	translation initiation factor activity