Cmc01g0013631 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0013631
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty1-copia retrotransposon protein
Location	CMiso1.1chr01: 10238421 .. 10239404 (-)
RNA-Seq Expression	Cmc01g0013631
Synteny	Cmc01g0013631

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAACTCAGCCACTGCAGGAGTAATCAGAAAAGGGAAGGTTATTTTAAAGTTAACTTCTGACAAAACTTTATCTTTAAGTAATGTTCTATATGTCCCTTCCCTACGTAGGAACCTGGTGTCTGGGAGTCTGTTGAATCGGATCGGGCTTAAAATTGTGCTAGAAGGTGACAAAGTTGTCCTCACCAAAAATGGAGATTTTGTCGGTAAGGGGTATCTGTCTAATGGTCTATTTGTGCTAAACACGATTTCTATGAATGCAAATGCTTCCAGTTCTGCTTACTTGATTGAATCTGCAAACTTATGGCATGGTAGATTAGGACATGTGAACTTTGCATCAATTAGAAAACTTAAAGATTTGAGACTCATTAATACCTCTGAGACGCATGAAACTGGTAAATGTTCTGTTTGCATAGAAAGTAAATTTCATAAGAAGCCCTTCAAACCAGTTGAATATAGAACTACTGAGCTGTTAGAATTAATTCACTCAGATCTAGCCGACTTTAGAACCACTGCTAGTAGAGGTGGTAAAAACTACTATGTATCCTTTGTTGATGATTACTCTAGATTCACTAAGATATACCTGATAAAAACAAAAAATGAAGTTGTCAGTATGTTCGTAAAATGCAAGGCAGAATCTGAGAATCAGTTAGGAAAAAGGATAAAAAGATTAAGATCAGATAGAGGTGGTGAGTATTCCGATAAAACTCTTAAAGAATTTTGTGAATCAAATGGTATCATCCATGAATTTACTGCTCCTTACTCACCACAACAAAATGGCATAGCAGAACGAAAAAAGAGAACTCTTAAAGAAATGATGAATGCCATGTTATTAAGCTCCGGTTTATCTGATAATATGTGGAGGGAAGCCGTGTTGTCTGCATGTTTTATTCTTAACAGGATTCCCCACAAAAGGCTAGACAAAACTCCATACGAACTCTGGAAAGGACATGCACCAAATCTTTCCTACCTAAAGGTCTAG

mRNA sequence

ATGGGAAACTCAGCCACTGCAGGAGTAATCAGAAAAGGGAAGGTTATTTTAAAGTTAACTTCTGACAAAACTTTATCTTTAAGTAATGTTCTATATGTCCCTTCCCTACGTAGGAACCTGGTGTCTGGGAGTCTGTTGAATCGGATCGGGCTTAAAATTGTGCTAGAAGGTGACAAAGTTGTCCTCACCAAAAATGGAGATTTTGTCGGTAAGGGGTATCTGTCTAATGGTCTATTTGTGCTAAACACGATTTCTATGAATGCAAATGCTTCCAGTTCTGCTTACTTGATTGAATCTGCAAACTTATGGCATGGTAGATTAGGACATGTGAACTTTGCATCAATTAGAAAACTTAAAGATTTGAGACTCATTAATACCTCTGAGACGCATGAAACTGGTAAATGTTCTGTTTGCATAGAAAGTAAATTTCATAAGAAGCCCTTCAAACCAGTTGAATATAGAACTACTGAGCTGTTAGAATTAATTCACTCAGATCTAGCCGACTTTAGAACCACTGCTAGTAGAGGTGGTAAAAACTACTATGTATCCTTTGTTGATGATTACTCTAGATTCACTAAGATATACCTGATAAAAACAAAAAATGAAGTTGTCAGTATGTTCGTAAAATGCAAGGCAGAATCTGAGAATCAGTTAGGAAAAAGGATAAAAAGATTAAGATCAGATAGAGGTGGTGAGTATTCCGATAAAACTCTTAAAGAATTTTGTGAATCAAATGGTATCATCCATGAATTTACTGCTCCTTACTCACCACAACAAAATGGCATAGCAGAACGAAAAAAGAGAACTCTTAAAGAAATGATGAATGCCATGTTATTAAGCTCCGGTTTATCTGATAATATGTGGAGGGAAGCCGTGTTGTCTGCATGTTTTATTCTTAACAGGATTCCCCACAAAAGGCTAGACAAAACTCCATACGAACTCTGGAAAGGACATGCACCAAATCTTTCCTACCTAAAGGTCTAG

Coding sequence (CDS)

ATGGGAAACTCAGCCACTGCAGGAGTAATCAGAAAAGGGAAGGTTATTTTAAAGTTAACTTCTGACAAAACTTTATCTTTAAGTAATGTTCTATATGTCCCTTCCCTACGTAGGAACCTGGTGTCTGGGAGTCTGTTGAATCGGATCGGGCTTAAAATTGTGCTAGAAGGTGACAAAGTTGTCCTCACCAAAAATGGAGATTTTGTCGGTAAGGGGTATCTGTCTAATGGTCTATTTGTGCTAAACACGATTTCTATGAATGCAAATGCTTCCAGTTCTGCTTACTTGATTGAATCTGCAAACTTATGGCATGGTAGATTAGGACATGTGAACTTTGCATCAATTAGAAAACTTAAAGATTTGAGACTCATTAATACCTCTGAGACGCATGAAACTGGTAAATGTTCTGTTTGCATAGAAAGTAAATTTCATAAGAAGCCCTTCAAACCAGTTGAATATAGAACTACTGAGCTGTTAGAATTAATTCACTCAGATCTAGCCGACTTTAGAACCACTGCTAGTAGAGGTGGTAAAAACTACTATGTATCCTTTGTTGATGATTACTCTAGATTCACTAAGATATACCTGATAAAAACAAAAAATGAAGTTGTCAGTATGTTCGTAAAATGCAAGGCAGAATCTGAGAATCAGTTAGGAAAAAGGATAAAAAGATTAAGATCAGATAGAGGTGGTGAGTATTCCGATAAAACTCTTAAAGAATTTTGTGAATCAAATGGTATCATCCATGAATTTACTGCTCCTTACTCACCACAACAAAATGGCATAGCAGAACGAAAAAAGAGAACTCTTAAAGAAATGATGAATGCCATGTTATTAAGCTCCGGTTTATCTGATAATATGTGGAGGGAAGCCGTGTTGTCTGCATGTTTTATTCTTAACAGGATTCCCCACAAAAGGCTAGACAAAACTCCATACGAACTCTGGAAAGGACATGCACCAAATCTTTCCTACCTAAAGGTCTAG

Protein sequence

MGNSATAGVIRKGKVILKLTSDKTLSLSNVLYVPSLRRNLVSGSLLNRIGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKDLRLINTSETHETGKCSVCIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNYYVSFVDDYSRFTKIYLIKTKNEVVSMFVKCKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKKRTLKEMMNAMLLSSGLSDNMWREAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYLKV

Homology

[Close]

BLAST of Cmc01g0013631 vs. NCBI nr
Match: KAA0048277.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 647.1 bits (1668), Expect = 8.0e-182
Identity = 326/327 (99.69%), Postives = 326/327 (99.69%), Query Frame = 0


Query: 1   MGNSATAGVIRKGKVILKLTSDKTLSLSNVLYVPSLRRNLVSGSLLNRIGLKIVLEGDKV 60
           MGNSATAGVI KGKVILKLTSDKTLSLSNVLYVPSLRRNLVSGSLLNRIGLKIVLEGDKV
Sbjct: 275 MGNSATAGVIGKGKVILKLTSDKTLSLSNVLYVPSLRRNLVSGSLLNRIGLKIVLEGDKV 334

Query: 61  VLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 120
           VLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD
Sbjct: 335 VLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 394

Query: 121 LRLINTSETHETGKCSVCIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNY 180
           LRLINTSETHETGKCSVCIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNY
Sbjct: 395 LRLINTSETHETGKCSVCIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNY 454

Query: 181 YVSFVDDYSRFTKIYLIKTKNEVVSMFVKCKAESENQLGKRIKRLRSDRGGEYSDKTLKE 240
           YVSFVDDYSRFTKIYLIKTKNEVVSMFVKCKAESENQLGKRIKRLRSDRGGEYSDKTLKE
Sbjct: 455 YVSFVDDYSRFTKIYLIKTKNEVVSMFVKCKAESENQLGKRIKRLRSDRGGEYSDKTLKE 514

Query: 241 FCESNGIIHEFTAPYSPQQNGIAERKKRTLKEMMNAMLLSSGLSDNMWREAVLSACFILN 300
           FCESNGIIHEFTAPYSPQQNGIAERKKRTLKEMMNAMLLSSGLSDNMWREAVLSACFILN
Sbjct: 515 FCESNGIIHEFTAPYSPQQNGIAERKKRTLKEMMNAMLLSSGLSDNMWREAVLSACFILN 574

Query: 301 RIPHKRLDKTPYELWKGHAPNLSYLKV 328
           RIPHKRLDKTPYELWKGHAPNLSYLKV
Sbjct: 575 RIPHKRLDKTPYELWKGHAPNLSYLKV 601

[Close]

BLAST of Cmc01g0013631 vs. NCBI nr
Match: TYK11299.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 630.6 bits (1625), Expect = 7.8e-177
Identity = 317/327 (96.94%), Postives = 320/327 (97.86%), Query Frame = 0


Query: 1   MGNSATAGVIRKGKVILKLTSDKTLSLSNVLYVPSLRRNLVSGSLLNRIGLKIVLEGDKV 60
           MGNSATAGVI KGKVILKLTS KTLSLSNVLYVPSLRRNLVSGSLLNR GLKIVLEGDKV
Sbjct: 303 MGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKV 362

Query: 61  VLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 120
           VLTKNGDF+GKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD
Sbjct: 363 VLTKNGDFIGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 422

Query: 121 LRLINTSETHETGKCSVCIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNY 180
           +RLINTSETHETGKCS+CIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNY
Sbjct: 423 MRLINTSETHETGKCSICIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNY 482

Query: 181 YVSFVDDYSRFTKIYLIKTKNEVVSMFVKCKAESENQLGKRIKRLRSDRGGEYSDKTLKE 240
           YVSFVDDYSRFTKIYLIKTKNE VSMFVK KAESENQLGKRIKRLRSDRGGEYSDKTLKE
Sbjct: 483 YVSFVDDYSRFTKIYLIKTKNEAVSMFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKE 542

Query: 241 FCESNGIIHEFTAPYSPQQNGIAERKKRTLKEMMNAMLLSSGLSDNMWREAVLSACFILN 300
           FCESNGIIHEFTAPYSPQQNGIAERK RTLKEMMNAMLLSSGLSDNMW EAVLSACFILN
Sbjct: 543 FCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILN 602

Query: 301 RIPHKRLDKTPYELWKGHAPNLSYLKV 328
           RIPHKRLDKTPYELWKGHAPNLSYLKV
Sbjct: 603 RIPHKRLDKTPYELWKGHAPNLSYLKV 629

[Close]

BLAST of Cmc01g0013631 vs. NCBI nr
Match: TYK12114.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 630.2 bits (1624), Expect = 1.0e-176
Identity = 317/327 (96.94%), Postives = 320/327 (97.86%), Query Frame = 0


Query: 1   MGNSATAGVIRKGKVILKLTSDKTLSLSNVLYVPSLRRNLVSGSLLNRIGLKIVLEGDKV 60
           MGNSATAGVI KGKVILKLTS KTLSLSNVLYVPSLRRNLVSGSLLNR+GLKIVLEGDKV
Sbjct: 217 MGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRVGLKIVLEGDKV 276

Query: 61  VLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 120
           VLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD
Sbjct: 277 VLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 336

Query: 121 LRLINTSETHETGKCSVCIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNY 180
           +RLINTSETHETGKCS+CIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNY
Sbjct: 337 MRLINTSETHETGKCSICIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNY 396

Query: 181 YVSFVDDYSRFTKIYLIKTKNEVVSMFVKCKAESENQLGKRIKRLRSDRGGEYSDKTLKE 240
           YVSFVDDYSRFTKIYLIKTKNE VSMFVK KAESENQLGKRIKRLRSDRGGEY DKTLKE
Sbjct: 397 YVSFVDDYSRFTKIYLIKTKNEAVSMFVKFKAESENQLGKRIKRLRSDRGGEYFDKTLKE 456

Query: 241 FCESNGIIHEFTAPYSPQQNGIAERKKRTLKEMMNAMLLSSGLSDNMWREAVLSACFILN 300
           FCESNGIIHEFTAPYSPQQNGIAERK RTLKEMMNAMLLSSGLSDNMW EAVLSACFILN
Sbjct: 457 FCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILN 516

Query: 301 RIPHKRLDKTPYELWKGHAPNLSYLKV 328
           RIPHKRLDKTPYELWKGHAPNLSYLKV
Sbjct: 517 RIPHKRLDKTPYELWKGHAPNLSYLKV 543

[Close]

BLAST of Cmc01g0013631 vs. NCBI nr
Match: TYK27931.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 629.8 bits (1623), Expect = 1.3e-176
Identity = 317/327 (96.94%), Postives = 320/327 (97.86%), Query Frame = 0


Query: 1   MGNSATAGVIRKGKVILKLTSDKTLSLSNVLYVPSLRRNLVSGSLLNRIGLKIVLEGDKV 60
           MGNSATAGVI KGKVILKLTS KTLSLSNVLYVPSLRRNLVSGSLLNR GLKIVLEGDKV
Sbjct: 366 MGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKV 425

Query: 61  VLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 120
           VLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD
Sbjct: 426 VLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 485

Query: 121 LRLINTSETHETGKCSVCIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNY 180
           +RLINTSETHETGKCS+CIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNY
Sbjct: 486 MRLINTSETHETGKCSICIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNY 545

Query: 181 YVSFVDDYSRFTKIYLIKTKNEVVSMFVKCKAESENQLGKRIKRLRSDRGGEYSDKTLKE 240
           YVSFVDDYSRFTKIYLI+TKNE VSMFVK KAESENQLGKRIKRLRSDRGGEYSDKTLKE
Sbjct: 546 YVSFVDDYSRFTKIYLIRTKNEAVSMFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKE 605

Query: 241 FCESNGIIHEFTAPYSPQQNGIAERKKRTLKEMMNAMLLSSGLSDNMWREAVLSACFILN 300
           FCESNGIIHEFTAPYSPQQNGIAERK RTLKEMMNAMLLSSGLSDNMW EAVLSACFILN
Sbjct: 606 FCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILN 665

Query: 301 RIPHKRLDKTPYELWKGHAPNLSYLKV 328
           RIPHKRLDKTPYELWKGHAPNLSYLKV
Sbjct: 666 RIPHKRLDKTPYELWKGHAPNLSYLKV 692

[Close]

BLAST of Cmc01g0013631 vs. NCBI nr
Match: TYK05597.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 629.8 bits (1623), Expect = 1.3e-176
Identity = 317/327 (96.94%), Postives = 320/327 (97.86%), Query Frame = 0


Query: 1   MGNSATAGVIRKGKVILKLTSDKTLSLSNVLYVPSLRRNLVSGSLLNRIGLKIVLEGDKV 60
           MGNSATAGVI KGKVILKLTS KTLSLSNVLYVPSLRRNLVSGSLLNR GLKIVLEGDKV
Sbjct: 367 MGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKV 426

Query: 61  VLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 120
           VLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD
Sbjct: 427 VLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 486

Query: 121 LRLINTSETHETGKCSVCIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNY 180
           +RLINTSETHETGKCS+CIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNY
Sbjct: 487 MRLINTSETHETGKCSICIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNY 546

Query: 181 YVSFVDDYSRFTKIYLIKTKNEVVSMFVKCKAESENQLGKRIKRLRSDRGGEYSDKTLKE 240
           YVSFVDDYSRFTKIYLI+TKNE VSMFVK KAESENQLGKRIKRLRSDRGGEYSDKTLKE
Sbjct: 547 YVSFVDDYSRFTKIYLIRTKNEAVSMFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKE 606

Query: 241 FCESNGIIHEFTAPYSPQQNGIAERKKRTLKEMMNAMLLSSGLSDNMWREAVLSACFILN 300
           FCESNGIIHEFTAPYSPQQNGIAERK RTLKEMMNAMLLSSGLSDNMW EAVLSACFILN
Sbjct: 607 FCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILN 666

Query: 301 RIPHKRLDKTPYELWKGHAPNLSYLKV 328
           RIPHKRLDKTPYELWKGHAPNLSYLKV
Sbjct: 667 RIPHKRLDKTPYELWKGHAPNLSYLKV 693

[Close]

BLAST of Cmc01g0013631 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 5.6e-53
Identity = 117/328 (35.67%), Postives = 183/328 (55.79%), Query Frame = 0


Query: 1   MGNSATAGVIRKGKVILKLTSDKTLSLSNVLYVPSLRRNLVSGSLLNRIGLKIVLEGDKV 60
           MGN++ + +   G + +K     TL L +V +VP LR NL+SG  L+R G +      K 
Sbjct: 324 MGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKW 383

Query: 61  VLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 120
            LTK    + KG     L+  N        +++   I S +LWH R+GH++   ++ L  
Sbjct: 384 RLTKGSLVIAKGVARGTLYRTNAEICQGELNAAQDEI-SVDLWHKRMGHMSEKGLQILAK 443

Query: 121 LRLINTSETHETGKCSVCIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNY 180
             LI+ ++      C  C+  K H+  F+    R   +L+L++SD+       S GG  Y
Sbjct: 444 KSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKY 503

Query: 181 YVSFVDDYSRFTKIYLIKTKNEVVSMFVKCKAESENQLGKRIKRLRSDRGGEYSDKTLKE 240
           +V+F+DD SR   +Y++KTK++V  +F K  A  E + G+++KRLRSD GGEY+ +  +E
Sbjct: 504 FVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEE 563

Query: 241 FCESNGIIHEFTAPYSPQQNGIAERKKRTLKEMMNAMLLSSGLSDNMWREAVLSACFILN 300
           +C S+GI HE T P +PQ NG+AER  RT+ E + +ML  + L  + W EAV +AC+++N
Sbjct: 564 YCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLIN 623

Query: 301 RIPHKRLD-KTPYELWKGHAPNLSYLKV 328
           R P   L  + P  +W     + S+LKV
Sbjct: 624 RSPSVPLAFEIPERVWTNKEVSYSHLKV 650

[Close]

BLAST of Cmc01g0013631 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 177.6 bits (449), Expect = 2.4e-43
Identity = 108/324 (33.33%), Postives = 170/324 (52.47%), Query Frame = 0


Query: 16  ILKLTSDKTLSLSNVLYVPSLRRNLVSGSLLNRIGLKIVLEGDKVVLTKNGDFVGKGY-L 75
           I++L +D  ++L +VL+      NL+S   L   G+ I  +   V ++KNG  V K   +
Sbjct: 334 IVRLRNDHEITLEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMVVKNSGM 393

Query: 76  SNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLK------DLRLINTSE 135
            N + V+N  + + NA        +  LWH R GH++   + ++K      D  L+N  E
Sbjct: 394 LNNVPVINFQAYSINAKHK----NNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLE 453

Query: 136 THETGKCSVCIESKFHKKPFKPVEYRT--TELLELIHSDLADFRTTASRGGKNYYVSFVD 195
                 C  C+  K  + PFK ++ +T     L ++HSD+    T  +   KNY+V FVD
Sbjct: 454 L-SCEICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVD 513

Query: 196 DYSRFTKIYLIKTKNEVVSMFVKCKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNG 255
            ++ +   YLIK K++V SMF    A+SE     ++  L  D G EY    +++FC   G
Sbjct: 514 QFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKG 573

Query: 256 IIHEFTAPYSPQQNGIAERKKRTLKEMMNAMLLSSGLSDNMWREAVLSACFILNRIPHKR 315
           I +  T P++PQ NG++ER  RT+ E    M+  + L  + W EAVL+A +++NRIP + 
Sbjct: 574 ISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRA 633

Query: 316 L---DKTPYELWKGHAPNLSYLKV 328
           L    KTPYE+W    P L +L+V
Sbjct: 634 LVDSSKTPYEMWHNKKPYLKHLRV 652

[Close]

BLAST of Cmc01g0013631 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.8e-33
Identity = 106/339 (31.27%), Postives = 173/339 (51.03%), Query Frame = 0


Query: 1   MGNSATAGVIRKGKVILKLTSDKTLSLSNVLYVPSLRRNLVSGSLL---NRIGLKIVLEG 60
           + + +T  +   G   L  TS ++L L+ VLYVP++ +NL+S   L   NR+ ++     
Sbjct: 341 IADGSTIPITHTGSASLP-TSSRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPAS 400

Query: 61  DKVVLTKNGDFVGKGYLSNGLF-----VLNTISMNANASSSAYLIESANLWHGRLGHVNF 120
            +V     G  + +G   + L+         +SM A+  S A    + + WH RLGH + 
Sbjct: 401 FQVKDLNTGVPLLQGKTKDELYEWPIASSQAVSMFASPCSKA----THSSWHSRLGHPSL 460

Query: 121 A---SIRKLKDLRLINTSETHETGKCSVCIESKFHKKPFKPVEYRTTELLELIHSDLADF 180
           A   S+     L ++N S  H+   CS C  +K HK PF      +++ LE I+SD+   
Sbjct: 461 AILNSVISNHSLPVLNPS--HKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWS- 520

Query: 181 RTTASRGGKNYYVSFVDDYSRFTKIYLIKTKNEVVSMFVKCKAESENQLGKRIKRLRSDR 240
               S     YYV FVD ++R+T +Y +K K++V   F+  K+  EN+   RI  L SD 
Sbjct: 521 SPILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDN 580

Query: 241 GGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKKRTLKEMMNAMLLSSGLSDNMWR 300
           GGE+    L+++   +GI H  + P++P+ NG++ERK R + EM   +L  + +    W 
Sbjct: 581 GGEF--VVLRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYWP 640

Query: 301 EAVLSACFILNRIPHKRLD-KTPYELWKGHAPNLSYLKV 328
            A   A +++NR+P   L  ++P++   G  PN   LKV
Sbjct: 641 YAFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKV 669

[Close]

BLAST of Cmc01g0013631 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 8.7e-30
Identity = 98/337 (29.08%), Postives = 167/337 (49.55%), Query Frame = 0


Query: 1   MGNSATAGVIRKGKVILKLTSDKTLSLSNVLYVPSLRRNLVSGSLL---NRIGLKIVLEG 60
           + + +T  +   G   L  T  + L+L N+LYVP++ +NL+S   L   N + ++     
Sbjct: 362 VADGSTIPISHTGSTSLS-TKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPAS 421

Query: 61  DKVVLTKNGDFVGKGYLSNGLF-----VLNTISMNANASSSAYLIESANLWHGRLGHVNF 120
            +V     G  + +G   + L+         +S+ A+ SS A    + + WH RLGH   
Sbjct: 422 FQVKDLNTGVPLLQGKTKDELYEWPIASSQPVSLFASPSSKA----THSSWHARLGHPAP 481

Query: 121 ASIRK-LKDLRLINTSETHETGKCSVCIESKFHKKPFKPVEYRTTELLELIHSDLADFRT 180
           + +   + +  L   + +H+   CS C+ +K +K PF      +T  LE I+SD+     
Sbjct: 482 SILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSDVWS-SP 541

Query: 181 TASRGGKNYYVSFVDDYSRFTKIYLIKTKNEVVSMFVKCKAESENQLGKRIKRLRSDRGG 240
             S     YYV FVD ++R+T +Y +K K++V   F+  K   EN+   RI    SD GG
Sbjct: 542 ILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGG 601

Query: 241 EYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKKRTLKEMMNAMLLSSGLSDNMWREA 300
           E+    L E+   +GI H  + P++P+ NG++ERK R + E    +L  + +    W  A
Sbjct: 602 EF--VALWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYA 661

Query: 301 VLSACFILNRIPHKRLD-KTPYELWKGHAPNLSYLKV 328
              A +++NR+P   L  ++P++   G +PN   L+V
Sbjct: 662 FAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKLRV 690

[Close]

BLAST of Cmc01g0013631 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.1e-19
Identity = 88/309 (28.48%), Postives = 140/309 (45.31%), Query Frame = 0


Query: 20  TSDKTLSLSNVLYVPSLRRNLVSGSLLNRIGLKIVLEGDKVVL---TKNGDF--VGKGYL 79
           TS K L   N+ Y       L + ++        +   D  VL    K+GDF  + K YL
Sbjct: 508 TSIKALHTPNIAYDLLSLSELANQNITACFTRNTLERSDGTVLAPIVKHGDFYWLSKKYL 567

Query: 80  SNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRK-LKDLRLINTSETH--- 139
                   TI+ N N S S        L H  LGH NF SI+K LK   +    E+    
Sbjct: 568 IPSHISKLTIN-NVNKSKSVNKYPYP-LIHRMLGHANFRSIQKSLKKNAVTYLKESDIEW 627

Query: 140 ---ETGKCSVCIESKF----HKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNYYVS 199
               T +C  C+  K     H K  +     + E  + +H+D+        +   +Y++S
Sbjct: 628 SNASTYQCPDCLIGKSTKHRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFIS 687

Query: 200 FVDDYSRFTKIYLIKTKNE--VVSMFVKCKAESENQLGKRIKRLRSDRGGEYSDKTLKEF 259
           F D+ +RF  +Y +  + E  ++++F    A  +NQ   R+  ++ DRG EY++KTL +F
Sbjct: 688 FTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKF 747

Query: 260 CESNGIIHEFTAPYSPQQNGIAERKKRTLKEMMNAMLLSSGLSDNMWREAVLSACFILNR 311
             + GI   +T     + +G+AER  RTL      +L  SGL +++W  AV  +  I N 
Sbjct: 748 FTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNS 807

[Close]

BLAST of Cmc01g0013631 vs. ExPASy TrEMBL
Match: A0A5A7U214 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G002010 PE=4 SV=1)

HSP 1 Score: 647.1 bits (1668), Expect = 3.9e-182
Identity = 326/327 (99.69%), Postives = 326/327 (99.69%), Query Frame = 0


Query: 1   MGNSATAGVIRKGKVILKLTSDKTLSLSNVLYVPSLRRNLVSGSLLNRIGLKIVLEGDKV 60
           MGNSATAGVI KGKVILKLTSDKTLSLSNVLYVPSLRRNLVSGSLLNRIGLKIVLEGDKV
Sbjct: 275 MGNSATAGVIGKGKVILKLTSDKTLSLSNVLYVPSLRRNLVSGSLLNRIGLKIVLEGDKV 334

Query: 61  VLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 120
           VLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD
Sbjct: 335 VLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 394

Query: 121 LRLINTSETHETGKCSVCIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNY 180
           LRLINTSETHETGKCSVCIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNY
Sbjct: 395 LRLINTSETHETGKCSVCIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNY 454

Query: 181 YVSFVDDYSRFTKIYLIKTKNEVVSMFVKCKAESENQLGKRIKRLRSDRGGEYSDKTLKE 240
           YVSFVDDYSRFTKIYLIKTKNEVVSMFVKCKAESENQLGKRIKRLRSDRGGEYSDKTLKE
Sbjct: 455 YVSFVDDYSRFTKIYLIKTKNEVVSMFVKCKAESENQLGKRIKRLRSDRGGEYSDKTLKE 514

Query: 241 FCESNGIIHEFTAPYSPQQNGIAERKKRTLKEMMNAMLLSSGLSDNMWREAVLSACFILN 300
           FCESNGIIHEFTAPYSPQQNGIAERKKRTLKEMMNAMLLSSGLSDNMWREAVLSACFILN
Sbjct: 515 FCESNGIIHEFTAPYSPQQNGIAERKKRTLKEMMNAMLLSSGLSDNMWREAVLSACFILN 574

Query: 301 RIPHKRLDKTPYELWKGHAPNLSYLKV 328
           RIPHKRLDKTPYELWKGHAPNLSYLKV
Sbjct: 575 RIPHKRLDKTPYELWKGHAPNLSYLKV 601

[Close]

BLAST of Cmc01g0013631 vs. ExPASy TrEMBL
Match: A0A5D3CM58 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1827G00040 PE=4 SV=1)

HSP 1 Score: 630.6 bits (1625), Expect = 3.8e-177
Identity = 317/327 (96.94%), Postives = 320/327 (97.86%), Query Frame = 0


Query: 1   MGNSATAGVIRKGKVILKLTSDKTLSLSNVLYVPSLRRNLVSGSLLNRIGLKIVLEGDKV 60
           MGNSATAGVI KGKVILKLTS KTLSLSNVLYVPSLRRNLVSGSLLNR GLKIVLEGDKV
Sbjct: 303 MGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKV 362

Query: 61  VLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 120
           VLTKNGDF+GKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD
Sbjct: 363 VLTKNGDFIGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 422

Query: 121 LRLINTSETHETGKCSVCIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNY 180
           +RLINTSETHETGKCS+CIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNY
Sbjct: 423 MRLINTSETHETGKCSICIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNY 482

Query: 181 YVSFVDDYSRFTKIYLIKTKNEVVSMFVKCKAESENQLGKRIKRLRSDRGGEYSDKTLKE 240
           YVSFVDDYSRFTKIYLIKTKNE VSMFVK KAESENQLGKRIKRLRSDRGGEYSDKTLKE
Sbjct: 483 YVSFVDDYSRFTKIYLIKTKNEAVSMFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKE 542

Query: 241 FCESNGIIHEFTAPYSPQQNGIAERKKRTLKEMMNAMLLSSGLSDNMWREAVLSACFILN 300
           FCESNGIIHEFTAPYSPQQNGIAERK RTLKEMMNAMLLSSGLSDNMW EAVLSACFILN
Sbjct: 543 FCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILN 602

Query: 301 RIPHKRLDKTPYELWKGHAPNLSYLKV 328
           RIPHKRLDKTPYELWKGHAPNLSYLKV
Sbjct: 603 RIPHKRLDKTPYELWKGHAPNLSYLKV 629

[Close]

BLAST of Cmc01g0013631 vs. ExPASy TrEMBL
Match: A0A5D3CLR6 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00480 PE=4 SV=1)

HSP 1 Score: 630.2 bits (1624), Expect = 4.9e-177
Identity = 317/327 (96.94%), Postives = 320/327 (97.86%), Query Frame = 0


Query: 1   MGNSATAGVIRKGKVILKLTSDKTLSLSNVLYVPSLRRNLVSGSLLNRIGLKIVLEGDKV 60
           MGNSATAGVI KGKVILKLTS KTLSLSNVLYVPSLRRNLVSGSLLNR+GLKIVLEGDKV
Sbjct: 217 MGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRVGLKIVLEGDKV 276

Query: 61  VLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 120
           VLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD
Sbjct: 277 VLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 336

Query: 121 LRLINTSETHETGKCSVCIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNY 180
           +RLINTSETHETGKCS+CIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNY
Sbjct: 337 MRLINTSETHETGKCSICIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNY 396

Query: 181 YVSFVDDYSRFTKIYLIKTKNEVVSMFVKCKAESENQLGKRIKRLRSDRGGEYSDKTLKE 240
           YVSFVDDYSRFTKIYLIKTKNE VSMFVK KAESENQLGKRIKRLRSDRGGEY DKTLKE
Sbjct: 397 YVSFVDDYSRFTKIYLIKTKNEAVSMFVKFKAESENQLGKRIKRLRSDRGGEYFDKTLKE 456

Query: 241 FCESNGIIHEFTAPYSPQQNGIAERKKRTLKEMMNAMLLSSGLSDNMWREAVLSACFILN 300
           FCESNGIIHEFTAPYSPQQNGIAERK RTLKEMMNAMLLSSGLSDNMW EAVLSACFILN
Sbjct: 457 FCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILN 516

Query: 301 RIPHKRLDKTPYELWKGHAPNLSYLKV 328
           RIPHKRLDKTPYELWKGHAPNLSYLKV
Sbjct: 517 RIPHKRLDKTPYELWKGHAPNLSYLKV 543

[Close]

BLAST of Cmc01g0013631 vs. ExPASy TrEMBL
Match: A0A5D3C1A6 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00490 PE=4 SV=1)

HSP 1 Score: 629.8 bits (1623), Expect = 6.4e-177
Identity = 317/327 (96.94%), Postives = 320/327 (97.86%), Query Frame = 0


Query: 1   MGNSATAGVIRKGKVILKLTSDKTLSLSNVLYVPSLRRNLVSGSLLNRIGLKIVLEGDKV 60
           MGNSATAGVI KGKVILKLTS KTLSLSNVLYVPSLRRNLVSGSLLNR GLKIVLEGDKV
Sbjct: 367 MGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKV 426

Query: 61  VLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 120
           VLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD
Sbjct: 427 VLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 486

Query: 121 LRLINTSETHETGKCSVCIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNY 180
           +RLINTSETHETGKCS+CIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNY
Sbjct: 487 MRLINTSETHETGKCSICIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNY 546

Query: 181 YVSFVDDYSRFTKIYLIKTKNEVVSMFVKCKAESENQLGKRIKRLRSDRGGEYSDKTLKE 240
           YVSFVDDYSRFTKIYLI+TKNE VSMFVK KAESENQLGKRIKRLRSDRGGEYSDKTLKE
Sbjct: 547 YVSFVDDYSRFTKIYLIRTKNEAVSMFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKE 606

Query: 241 FCESNGIIHEFTAPYSPQQNGIAERKKRTLKEMMNAMLLSSGLSDNMWREAVLSACFILN 300
           FCESNGIIHEFTAPYSPQQNGIAERK RTLKEMMNAMLLSSGLSDNMW EAVLSACFILN
Sbjct: 607 FCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILN 666

Query: 301 RIPHKRLDKTPYELWKGHAPNLSYLKV 328
           RIPHKRLDKTPYELWKGHAPNLSYLKV
Sbjct: 667 RIPHKRLDKTPYELWKGHAPNLSYLKV 693

[Close]

BLAST of Cmc01g0013631 vs. ExPASy TrEMBL
Match: A0A5D3DWC4 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001190 PE=4 SV=1)

HSP 1 Score: 629.8 bits (1623), Expect = 6.4e-177
Identity = 317/327 (96.94%), Postives = 320/327 (97.86%), Query Frame = 0


Query: 1   MGNSATAGVIRKGKVILKLTSDKTLSLSNVLYVPSLRRNLVSGSLLNRIGLKIVLEGDKV 60
           MGNSATAGVI KGKVILKLTS KTLSLSNVLYVPSLRRNLVSGSLLNR GLKIVLEGDKV
Sbjct: 366 MGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKV 425

Query: 61  VLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 120
           VLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD
Sbjct: 426 VLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 485

Query: 121 LRLINTSETHETGKCSVCIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNY 180
           +RLINTSETHETGKCS+CIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNY
Sbjct: 486 MRLINTSETHETGKCSICIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNY 545

Query: 181 YVSFVDDYSRFTKIYLIKTKNEVVSMFVKCKAESENQLGKRIKRLRSDRGGEYSDKTLKE 240
           YVSFVDDYSRFTKIYLI+TKNE VSMFVK KAESENQLGKRIKRLRSDRGGEYSDKTLKE
Sbjct: 546 YVSFVDDYSRFTKIYLIRTKNEAVSMFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKE 605

Query: 241 FCESNGIIHEFTAPYSPQQNGIAERKKRTLKEMMNAMLLSSGLSDNMWREAVLSACFILN 300
           FCESNGIIHEFTAPYSPQQNGIAERK RTLKEMMNAMLLSSGLSDNMW EAVLSACFILN
Sbjct: 606 FCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILN 665

Query: 301 RIPHKRLDKTPYELWKGHAPNLSYLKV 328
           RIPHKRLDKTPYELWKGHAPNLSYLKV
Sbjct: 666 RIPHKRLDKTPYELWKGHAPNLSYLKV 692

The following BLAST results are available for this feature:

BLAST of Cmc01g0013631 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048277.1	8.0e-182	99.69	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK11299.1	7.8e-177	96.94	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK12114.1	1.0e-176	96.94	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK27931.1	1.3e-176	96.94	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK05597.1	1.3e-176	96.94	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc01g0013631 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	5.6e-53	35.67	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	2.4e-43	33.33	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	3.8e-33	31.27	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	8.7e-30	29.08	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q12491	3.1e-19	28.48	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc01g0013631 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U214	3.9e-182	99.69	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3CM58	3.8e-177	96.94	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3CLR6	4.9e-177	96.94	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3C1A6	6.4e-177	96.94	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DWC4	6.4e-177	96.94	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Cmc01g0013631 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 77..142 e-value: 6.6E-12 score: 45.1
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 159..257 e-value: 2.8E-14 score: 53.3
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 146..319 score: 24.743971
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 152..326 e-value: 1.4E-43 score: 150.5
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 97..297
None	No IPR available	PANTHER	PTHR11439:SF324	RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 97..297
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 160..325

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0013631.1	Cmc01g0013631.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding