Cmc01g0013401 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0013401
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Formin-binding protein 4 isoform X1
Location	CMiso1.1chr01: 9941708 .. 9943236 (+)
RNA-Seq Expression	Cmc01g0013401
Synteny	Cmc01g0013401

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTAAAATCTATATTTGCTATCGAAAATTAGCAAAAGTTGAGAAGTGACCTAAAATCTATAAAACCTCAACCATTAGATTTGGATTTCGACTTAGAATCTAAGACCCAATTGGTACAAAGTCCTCGAACCATAAATCAACGGCGTCTTCATCTTTGGTGGCAAAACCGACTTTGCCAAGGGCAAGAATTTTACAGATTCAATCCAGCGGATCCCTAAATTCATCCTAACAATCCAGTCTATCCCTTCACTTTCTGTTTCTTCTTCTTGCTATGGGAAAGAGACGAGAGCGTCGCCTTGCAGCTCTCAGCAACGTCGGTCGACGTGTCAAACTCGATCTTTTCGCCGAGCCCTCTGGTATTTTTTCGTTTTTTTTTCTGGGTGTTCCCCCTTTGATTTATATATGTCATTTTTAACGGTTCTGTATAATTGCGACTGTCGATATGTGTTTTTATTTGTTTGTTGCACGATTTTGTTGTGTTTTGTGGATTGTTTCTTTCTGTATGTGGGTTTGTTTTAGTTTCTATTTCCCCTTTTCCATCTGTTTATTTTGTAATGGAAGCGGAGAGTTTTGAGCTCCTGGTGGTTTCTTTTCTTATCTTATCGAGTTGGGGTTTTTTTCCTTTTTTTGTTTTTTTTTTATTTCTATTTGGAATTAATGGTTCTTGGTTGCTTAGGCAGGGGGGACTAGTTTGAATGTTATGTGAAAACAATCGGGATGGGGGATTGAACCTTCTACCCCGAAGGGAAGAGATGGAGAGATGCGCTGTGCTAACCTCACTGTGGTCTTTTTGTGTGTTTCACATATAGGGCTTCATTGACTTTGTGTTGTGATTAATGCAATGTTAGTCTGGACCATGATAGCTAATTTGGTTAACTTGATGTTGTAATGAATGCATTACATCCCTATTGTTGATCCCGGTTGCTTCTTTAAATTCTTTTACTTTTGGGTATATCTAGTCTTCTTCAATGATAAAAATGTTTTGCATCTAGATATTCAGTTTGTTGTGGTCAGCATGTCTCGATGATTGCTAAAGTGGTAAGGATATATATATATTATACATCAAAGAAATTTAATTTAGTTTCTATTGGCATTTTATCCAAATTCTTTCTAGGATTAGGGATAATTCTCTTTATATTAGTTGTTCTGTAATGCATGATATTGTTGCAGCCTCATGCAATTTTGGAGTTATCATTCTGAGATTATTAATATAGAAATAAGTGGCTTTATTTTAATGGTGGATGTGATATTCGTTGTCTAGGAGATTTAGATGGCTCTGATGGACATGAAGAAGTTGGAGGGGATATTGATACAAGACAGACAATCAAGTTACCTAAATCAGCATCCTCTTCAGGTGGGTTCTATCAGTGTTCTTCAAAAGGACTATGTAAAGGGGATATGAGTGCTTCACATTATAATGGTGGATATTTCAAACTATATGTACAAGACTTTGTGTTTTTTGCCCCAAGAATTTGTTTTCAGTCTATAGGGTGACAGTGGTCTTTGGGACACCAATTATCAGATCTGGT

mRNA sequence

TTTTAAAATCTATATTTGCTATCGAAAATTAGCAAAAGTTGAGAAGTGACCTAAAATCTATAAAACCTCAACCATTAGATTTGGATTTCGACTTAGAATCTAAGACCCAATTGGTACAAAGTCCTCGAACCATAAATCAACGGCGTCTTCATCTTTGGTGGCAAAACCGACTTTGCCAAGGGCAAGAATTTTACAGATTCAATCCAGCGGATCCCTAAATTCATCCTAACAATCCAGTCTATCCCTTCACTTTCTGTTTCTTCTTCTTGCTATGGGAAAGAGACGAGAGCGTCGCCTTGCAGCTCTCAGCAACGTCGGTCGACGTGTCAAACTCGATCTTTTCGCCGAGCCCTCTGGAGATTTAGATGGCTCTGATGGACATGAAGAAGTTGGAGGGGATATTGATACAAGACAGACAATCAAGTTACCTAAATCAGCATCCTCTTCAGGTGGGTTCTATCAGTGTTCTTCAAAAGGACTATGTAAAGGGGATATGAGTGCTTCACATTATAATGGTGGATATTTCAAACTATATGTACAAGACTTTGTGTTTTTTGCCCCAAGAATTTGTTTTCAGTCTATAGGGTGACAGTGGTCTTTGGGACACCAATTATCAGATCTGGT

Coding sequence (CDS)

ATGGGAAAGAGACGAGAGCGTCGCCTTGCAGCTCTCAGCAACGTCGGTCGACGTGTCAAACTCGATCTTTTCGCCGAGCCCTCTGGAGATTTAGATGGCTCTGATGGACATGAAGAAGTTGGAGGGGATATTGATACAAGACAGACAATCAAGTTACCTAAATCAGCATCCTCTTCAGGTGGGTTCTATCAGTGTTCTTCAAAAGGACTATGTAAAGGGGATATGAGTGCTTCACATTATAATGGTGGATATTTCAAACTATATGTACAAGACTTTGTGTTTTTTGCCCCAAGAATTTGTTTTCAGTCTATAGGGTGA

Protein sequence

MGKRRERRLAALSNVGRRVKLDLFAEPSGDLDGSDGHEEVGGDIDTRQTIKLPKSASSSGGFYQCSSKGLCKGDMSASHYNGGYFKLYVQDFVFFAPRICFQSIG

Homology

[Close]

BLAST of Cmc01g0013401 vs. NCBI nr
Match: KAG7024985.1 (hypothetical protein SDJN02_13805 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 152.5 bits (384), Expect = 2.0e-33
Identity = 75/81 (92.59%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 1  MGKRRERRLAALSNVGRRVKLDLFAEPSGDLDGSDGHEEVGGDIDTRQTIKLPKSASSSG 60
          MGKRRERR AALSN GRRVKLDLFAEPSGDLDGSD HEEVGGDI++RQT KLPKSASSSG
Sbjct: 1  MGKRRERRRAALSNAGRRVKLDLFAEPSGDLDGSDAHEEVGGDINSRQTTKLPKSASSSG 60

Query: 61 GFYQCSSKGLCKGDMSASHYN 82
          GFYQCSSKGLCKGDMSASHYN
Sbjct: 61 GFYQCSSKGLCKGDMSASHYN 81

[Close]

BLAST of Cmc01g0013401 vs. NCBI nr
Match: KAF3945159.1 (hypothetical protein CMV_028444 [Castanea mollissima])

HSP 1 Score: 129.8 bits (325), Expect = 1.4e-26
Identity = 67/106 (63.21%), Postives = 80/106 (75.47%), Query Frame = 0


Query: 1   MGKRRERRLAALSNVGRRVKLDLFAEPSGDLDGSDGHEEVGGDIDTRQTIKLPKSASSSG 60
           MGKR+ERRLAAL+N GRRVKLDLFAEP GDL GS  H+EVGGD D++    LP S +SSG
Sbjct: 1   MGKRKERRLAALNNAGRRVKLDLFAEPPGDLGGSTEHDEVGGDKDSKHRDGLPNSPTSSG 60

Query: 61  GFYQCSSKGLCKGDMSASHYNGGYFKLYVQDFV-FFAPRICFQSIG 106
           GF + SSKGLC+ D+SA H  GG  +LYVQD +    PR CFQ++G
Sbjct: 61  GFRRFSSKGLCRKDLSAQHCFGGNMELYVQDLLCCLPPRNCFQTVG 106

[Close]

BLAST of Cmc01g0013401 vs. NCBI nr
Match: RVW50289.1 (hypothetical protein CK203_081199 [Vitis vinifera] >RVX14750.1 hypothetical protein CK203_012047 [Vitis vinifera])

HSP 1 Score: 125.2 bits (313), Expect = 3.4e-25
Identity = 66/100 (66.00%), Postives = 76/100 (76.00%), Query Frame = 0


Query: 1   MGKRRERRLAALSNVGRRVKLDLFAEPSGDLDGSDGHEEVGGDIDTRQTIKLPKSASSSG 60
           MG+R+ERRLAA+S  GRRVKLDLFAEPSGDL GS   +EVGGD+D+++    P S SSSG
Sbjct: 1   MGRRKERRLAAISASGRRVKLDLFAEPSGDLGGSSVRDEVGGDLDSKRRAASPNSPSSSG 60

Query: 61  GFYQCSSKGLCKGDMSASHYNGGYFKLYVQDFV-FFAPRI 100
           GF Q SSKGLC  DMSA HY GG  +LYVQD V  F PR+
Sbjct: 61  GFRQFSSKGLCIEDMSAQHYFGGCMELYVQDIVMLFGPRV 100

[Close]

BLAST of Cmc01g0013401 vs. NCBI nr
Match: TYK08017.1 (formin-binding protein 4 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 121.7 bits (304), Expect = 3.8e-24
Identity = 63/67 (94.03%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1  MGKRRERRLAALSNVGRRVKLDLFAEPSGDLDGSDGHEEVGGDIDTRQTIKLPKSASSSG 60
          MGKRRERRLAALSNVGRRVKLDLFAEPSGDLDGSDGHEEVGGDIDTRQTIKLPKSASSSG
Sbjct: 1  MGKRRERRLAALSNVGRRVKLDLFAEPSGDLDGSDGHEEVGGDIDTRQTIKLPKSASSSG 60

Query: 61 GFYQCSS 68
          G  + SS
Sbjct: 61 GCDETSS 67

[Close]

BLAST of Cmc01g0013401 vs. NCBI nr
Match: XP_008463033.1 (PREDICTED: uncharacterized protein LOC103501273 isoform X1 [Cucumis melo])

HSP 1 Score: 118.2 bits (295), Expect = 4.2e-23
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MGKRRERRLAALSNVGRRVKLDLFAEPSGDLDGSDGHEEVGGDIDTRQTIKLPKSASSSG 60
          MGKRRERRLAALSNVGRRVKLDLFAEPSGDLDGSDGHEEVGGDIDTRQTIKLPKSASSSG
Sbjct: 1  MGKRRERRLAALSNVGRRVKLDLFAEPSGDLDGSDGHEEVGGDIDTRQTIKLPKSASSSG 60

[Close]

BLAST of Cmc01g0013401 vs. ExPASy TrEMBL
Match: A0A438ERC7 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_012047 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.6e-25
Identity = 66/100 (66.00%), Postives = 76/100 (76.00%), Query Frame = 0


Query: 1   MGKRRERRLAALSNVGRRVKLDLFAEPSGDLDGSDGHEEVGGDIDTRQTIKLPKSASSSG 60
           MG+R+ERRLAA+S  GRRVKLDLFAEPSGDL GS   +EVGGD+D+++    P S SSSG
Sbjct: 1   MGRRKERRLAAISASGRRVKLDLFAEPSGDLGGSSVRDEVGGDLDSKRRAASPNSPSSSG 60

Query: 61  GFYQCSSKGLCKGDMSASHYNGGYFKLYVQDFV-FFAPRI 100
           GF Q SSKGLC  DMSA HY GG  +LYVQD V  F PR+
Sbjct: 61  GFRQFSSKGLCIEDMSAQHYFGGCMELYVQDIVMLFGPRV 100

[Close]

BLAST of Cmc01g0013401 vs. ExPASy TrEMBL
Match: A0A5D3C7S2 (Formin-binding protein 4 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G001610 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.8e-24
Identity = 63/67 (94.03%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1  MGKRRERRLAALSNVGRRVKLDLFAEPSGDLDGSDGHEEVGGDIDTRQTIKLPKSASSSG 60
          MGKRRERRLAALSNVGRRVKLDLFAEPSGDLDGSDGHEEVGGDIDTRQTIKLPKSASSSG
Sbjct: 1  MGKRRERRLAALSNVGRRVKLDLFAEPSGDLDGSDGHEEVGGDIDTRQTIKLPKSASSSG 60

Query: 61 GFYQCSS 68
          G  + SS
Sbjct: 61 GCDETSS 67

[Close]

BLAST of Cmc01g0013401 vs. ExPASy TrEMBL
Match: A0A5A7U464 (Formin-binding protein 4 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G001550 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.0e-23
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MGKRRERRLAALSNVGRRVKLDLFAEPSGDLDGSDGHEEVGGDIDTRQTIKLPKSASSSG 60
          MGKRRERRLAALSNVGRRVKLDLFAEPSGDLDGSDGHEEVGGDIDTRQTIKLPKSASSSG
Sbjct: 1  MGKRRERRLAALSNVGRRVKLDLFAEPSGDLDGSDGHEEVGGDIDTRQTIKLPKSASSSG 60

[Close]

BLAST of Cmc01g0013401 vs. ExPASy TrEMBL
Match: A0A1S3CIA6 (uncharacterized protein LOC103501273 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501273 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.0e-23
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MGKRRERRLAALSNVGRRVKLDLFAEPSGDLDGSDGHEEVGGDIDTRQTIKLPKSASSSG 60
          MGKRRERRLAALSNVGRRVKLDLFAEPSGDLDGSDGHEEVGGDIDTRQTIKLPKSASSSG
Sbjct: 1  MGKRRERRLAALSNVGRRVKLDLFAEPSGDLDGSDGHEEVGGDIDTRQTIKLPKSASSSG 60

[Close]

BLAST of Cmc01g0013401 vs. ExPASy TrEMBL
Match: A0A6J1IKU4 (uncharacterized protein LOC111476534 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111476534 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.6e-20
Identity = 55/60 (91.67%), Postives = 56/60 (93.33%), Query Frame = 0


Query: 1  MGKRRERRLAALSNVGRRVKLDLFAEPSGDLDGSDGHEEVGGDIDTRQTIKLPKSASSSG 60
          MGKRRERR AALSN GRRVKLDLFAEPSGDLDGSD HEEVGGDID+RQT KLPKSASSSG
Sbjct: 1  MGKRRERRRAALSNAGRRVKLDLFAEPSGDLDGSDAHEEVGGDIDSRQTTKLPKSASSSG 60

[Close]

BLAST of Cmc01g0013401 vs. TAIR 10
Match: AT3G13225.2 (WW domain-containing protein )

HSP 1 Score: 65.5 bits (158), Expect = 3.0e-11
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 0


Query: 1  MGKRRERRLAALSNVGRRVKLDLFAEPSGDLDGSDGHEEVGGDIDTRQTIKLPKSASSSG 60
          MGKR+ERR AA+++ GRRVKLDLFAEPSGDL GSD  +  G + +  +  +LP S SSSG
Sbjct: 1  MGKRKERRYAAMNSTGRRVKLDLFAEPSGDLGGSDVRD--GVEREQTELNELPNSPSSSG 58

The following BLAST results are available for this feature:

BLAST of Cmc01g0013401 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024985.1	2.0e-33	92.59	hypothetical protein SDJN02_13805 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAF3945159.1	1.4e-26	63.21	hypothetical protein CMV_028444 [Castanea mollissima]	[more]
RVW50289.1	3.4e-25	66.00	hypothetical protein CK203_081199 [Vitis vinifera] >RVX14750.1 hypothetical prot...	[more]
TYK08017.1	3.8e-24	94.03	formin-binding protein 4 isoform X1 [Cucumis melo var. makuwa]	[more]
XP_008463033.1	4.2e-23	100.00	PREDICTED: uncharacterized protein LOC103501273 isoform X1 [Cucumis melo]	[more]

BLAST of Cmc01g0013401 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc01g0013401 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438ERC7	1.6e-25	66.00	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_012047 PE=4 SV=1	[more]
A0A5D3C7S2	1.8e-24	94.03	Formin-binding protein 4 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5A7U464	2.0e-23	100.00	Formin-binding protein 4 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A1S3CIA6	2.0e-23	100.00	uncharacterized protein LOC103501273 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1IKU4	1.6e-20	91.67	uncharacterized protein LOC111476534 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Cmc01g0013401 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13225.2	3.0e-11	60.00	WW domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47852	OS06G0298400 PROTEIN	coord: 1..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0013401.1	Cmc01g0013401.1	mRNA