Cmc01g0013111 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0013111
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr01: 9667339 .. 9668178 (-)
RNA-Seq Expression	Cmc01g0013111
Synteny	Cmc01g0013111

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCAGCTAAGCTGAAGGAACTAAAGGTCCAGTTACAGGAGTTACTGGACAAGGGCTTCATACGACCTAGCGTGTCACCTTGGGGAGCGCCAGTATTGTTTATGAAGAAGAAAGATGGATCGATGAACCTTTGCATTGACTATAGAGAGCTAAATAAGGTGACAGTAAAAAGTCGTTATCCTTTGCCCAGGATTGATGACTTGTTTGACCAGCTGCAAGGAGCCACTGTCTTCTCTAAGATCGATTTACGTTCGGGATACCACCAGTTGAGGATCAGAGACAGTGATATTCCTAAGACTACGTCCTGTTCCAGATACGGGCATTACGAGTTCATCGTGATGTCCTTTGGTTTGACCAATGCTCCCGCAGTATTTATGGACTTAATGAACAGAGTGTTTAAGGACTTCTTAGACACGTTTGTTATAGTCTTCATTGATGATATCTTGGTTTACTCCAAGACAGAGGTCGAGCATGAGGATCAATTGCATCAAGTTTTGGGGACTCTTCGAGCTAATAAGCTGTATGCCAAGTTTTCCAAGTGTGAGTTATGGCTGAAGAAGGTATCTTTTCTTGGACATGTGGTGTCCAGTGAGGGAGTTTCTGTAGATCCAGCAAAGATTGAAGTTGTTACTAGTTGGCCTCGATCGTCTACAGTCAGTGAGATCCGTAGTATTCTAGGTCGAACAGGTTATTATAGGAGGTTCGTGGAAGACTTTTCTCGTATAGCTAGTCCCTTGACTCAGTTGACCAGGAAGGGGACTCCATTTTTTGGAACCCAACTTGTGAGTCTAGTTTCCAAGAGCTCAAGCAGAAGCTTGTGTTTGCACCAGTCCTGA

mRNA sequence

ATGGCTCCAGCTAAGCTGAAGGAACTAAAGGTCCAGTTACAGGAGTTACTGGACAAGGGCTTCATACGACCTAGCGTGTCACCTTGGGGAGCGCCAGTATTGTTTATGAAGAAGAAAGATGGATCGATGAACCTTTGCATTGACTATAGAGAGCTAAATAAGGTGACAGTAAAAAGTCGTTATCCTTTGCCCAGGATTGATGACTTGTTTGACCAGCTGCAAGGAGCCACTGTCTTCTCTAAGATCGATTTACGTTCGGGATACCACCAGTTGAGGATCAGAGACAGTGATATTCCTAAGACTACGTCCTGTTCCAGATACGGGCATTACGAGTTCATCGTGATGTCCTTTGGTTTGACCAATGCTCCCGCAGTATTTATGGACTTAATGAACAGAGTGTTTAAGGACTTCTTAGACACGTTTGTTATAGTCTTCATTGATGATATCTTGGTTTACTCCAAGACAGAGGTCGAGCATGAGGATCAATTGCATCAAGTTTTGGGGACTCTTCGAGCTAATAAGCTGTATGCCAAGTTTTCCAAGTGTGAGTTATGGCTGAAGAAGGTATCTTTTCTTGGACATGTGGTGTCCAGTGAGGGAGTTTCTGTAGATCCAGCAAAGATTGAAGTTGTTACTAGTTGGCCTCGATCGTCTACAGTCAGTGAGATCCGTAGTATTCTAGGTCGAACAGGTTATTATAGGAGGTTCGTGGAAGACTTTTCTCGTATAGCTAGTCCCTTGACTCAGTTGACCAGGAAGGGGACTCCATTTTTTGGAACCCAACTTGTGAGTCTAGTTTCCAAGAGCTCAAGCAGAAGCTTGTGTTTGCACCAGTCCTGA

Coding sequence (CDS)

ATGGCTCCAGCTAAGCTGAAGGAACTAAAGGTCCAGTTACAGGAGTTACTGGACAAGGGCTTCATACGACCTAGCGTGTCACCTTGGGGAGCGCCAGTATTGTTTATGAAGAAGAAAGATGGATCGATGAACCTTTGCATTGACTATAGAGAGCTAAATAAGGTGACAGTAAAAAGTCGTTATCCTTTGCCCAGGATTGATGACTTGTTTGACCAGCTGCAAGGAGCCACTGTCTTCTCTAAGATCGATTTACGTTCGGGATACCACCAGTTGAGGATCAGAGACAGTGATATTCCTAAGACTACGTCCTGTTCCAGATACGGGCATTACGAGTTCATCGTGATGTCCTTTGGTTTGACCAATGCTCCCGCAGTATTTATGGACTTAATGAACAGAGTGTTTAAGGACTTCTTAGACACGTTTGTTATAGTCTTCATTGATGATATCTTGGTTTACTCCAAGACAGAGGTCGAGCATGAGGATCAATTGCATCAAGTTTTGGGGACTCTTCGAGCTAATAAGCTGTATGCCAAGTTTTCCAAGTGTGAGTTATGGCTGAAGAAGGTATCTTTTCTTGGACATGTGGTGTCCAGTGAGGGAGTTTCTGTAGATCCAGCAAAGATTGAAGTTGTTACTAGTTGGCCTCGATCGTCTACAGTCAGTGAGATCCGTAGTATTCTAGGTCGAACAGGTTATTATAGGAGGTTCGTGGAAGACTTTTCTCGTATAGCTAGTCCCTTGACTCAGTTGACCAGGAAGGGGACTCCATTTTTTGGAACCCAACTTGTGAGTCTAGTTTCCAAGAGCTCAAGCAGAAGCTTGTGTTTGCACCAGTCCTGA

Protein sequence

MAPAKLKELKVQLQELLDKGFIRPSVSPWGAPVLFMKKKDGSMNLCIDYRELNKVTVKSRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTTSCSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFSKCELWLKKVSFLGHVVSSEGVSVDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDFSRIASPLTQLTRKGTPFFGTQLVSLVSKSSSRSLCLHQS

Homology

[Close]

BLAST of Cmc01g0013111 vs. NCBI nr
Match: KAA0063793.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 476.1 bits (1224), Expect = 2.1e-130
Identity = 233/257 (90.66%), Postives = 243/257 (94.55%), Query Frame = 0


Query: 1   MAPAKLKELKVQLQELLDKGFIRPSVSPWGAPVLFMKKKDGSMNLCIDYRELNKVTVKSR 60
           MAPA+LKELKVQLQELLDKGFIRPSVSPWGAPVLF+KKKDGSM LCIDYRELNKVTVK+R
Sbjct: 137 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 196

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTTSCSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPKT   SRYGHYEF+VMSFGLT
Sbjct: 197 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 256

Query: 121 NAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFS 180
           NAPAVFMDLMNRVFKDFLD+FVIVFIDDIL+YSKTE EHE+ LHQVL TLRANKLYAKFS
Sbjct: 257 NAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 316

Query: 181 KCELWLKKVSFLGHVVSSEGVSVDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDF 240
           KCE WL+KV+FLGHVVSSEGVSVDPAKIE VT+WPR STVSEIRS LG  GYYRRFVEDF
Sbjct: 317 KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 376

Query: 241 SRIASPLTQLTRKGTPF 258
           SRIASPLTQLTRKGTPF
Sbjct: 377 SRIASPLTQLTRKGTPF 393

[Close]

BLAST of Cmc01g0013111 vs. NCBI nr
Match: KAA0054634.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 475.3 bits (1222), Expect = 3.6e-130
Identity = 233/257 (90.66%), Postives = 244/257 (94.94%), Query Frame = 0


Query: 1   MAPAKLKELKVQLQELLDKGFIRPSVSPWGAPVLFMKKKDGSMNLCIDYRELNKVTVKSR 60
           MAPA+LKELKVQLQELLDKGFIRPSVSPWGAPVLF+K+KDGSM LCIDYRELNKVTVK+R
Sbjct: 568 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKEKDGSMCLCIDYRELNKVTVKNR 627

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTTSCSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPKTT  SRYGHYEF+VMSFGLT
Sbjct: 628 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTTFRSRYGHYEFVVMSFGLT 687

Query: 121 NAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFS 180
           NAPAVFMDLMNRVFKDFLD+FVIVFIDDIL+YSKTE EHE+ LHQVL TLRANKLYAKFS
Sbjct: 688 NAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 747

Query: 181 KCELWLKKVSFLGHVVSSEGVSVDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDF 240
           KCE WL+KV+FLGHVVSSEGVSVDPAKIE VT+WPR STVSEIRS LG  GYYRRFVEDF
Sbjct: 748 KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 807

Query: 241 SRIASPLTQLTRKGTPF 258
           SRIASPLTQLTRKGTPF
Sbjct: 808 SRIASPLTQLTRKGTPF 824

[Close]

BLAST of Cmc01g0013111 vs. NCBI nr
Match: KAA0060745.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 474.9 bits (1221), Expect = 4.6e-130
Identity = 232/257 (90.27%), Postives = 243/257 (94.55%), Query Frame = 0


Query: 1   MAPAKLKELKVQLQELLDKGFIRPSVSPWGAPVLFMKKKDGSMNLCIDYRELNKVTVKSR 60
           MAPA+LKELKVQLQELLDKGFIRPSVSPWGAPVLF+KKKDGSM LCIDYRELNKVTVK+R
Sbjct: 571 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 630

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTTSCSRYGHYEFIVMSFGLT 120
           YPLP+IDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPKT   SRYGHYEF+VMSFGLT
Sbjct: 631 YPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 690

Query: 121 NAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFS 180
           NAPAVFMDLMNRVFKDFLD+FVIVFIDDIL+YSKTE EHE+ LHQVL TLRANKLYAKFS
Sbjct: 691 NAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 750

Query: 181 KCELWLKKVSFLGHVVSSEGVSVDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDF 240
           KCE WL+KV+FLGHVVSSEGVSVDPAKIE VT+WPR STVSEIRS LG  GYYRRFVEDF
Sbjct: 751 KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 810

Query: 241 SRIASPLTQLTRKGTPF 258
           SRIASPLTQLTRKGTPF
Sbjct: 811 SRIASPLTQLTRKGTPF 827

[Close]

BLAST of Cmc01g0013111 vs. NCBI nr
Match: KAA0058812.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 474.9 bits (1221), Expect = 4.6e-130
Identity = 231/257 (89.88%), Postives = 243/257 (94.55%), Query Frame = 0


Query: 1   MAPAKLKELKVQLQELLDKGFIRPSVSPWGAPVLFMKKKDGSMNLCIDYRELNKVTVKSR 60
           MAPA+LKELKVQLQELLDKGFIRPSVSPWGAPVLF+KKKDGSM LCIDYRELNKVT+K+R
Sbjct: 486 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTIKNR 545

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTTSCSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPKT   SRYGHYEF+VMSFGLT
Sbjct: 546 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFHSRYGHYEFVVMSFGLT 605

Query: 121 NAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFS 180
           NAPAVFMDLMNRVFKDF+D+FVIVFIDDIL+YSKTE EHE+ LHQVL TLRANKLYAKFS
Sbjct: 606 NAPAVFMDLMNRVFKDFIDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 665

Query: 181 KCELWLKKVSFLGHVVSSEGVSVDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDF 240
           KCE WL+KV+FLGHVVSSEGVSVDPAKIE VT+WPR STVSEIRS LG  GYYRRFVEDF
Sbjct: 666 KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 725

Query: 241 SRIASPLTQLTRKGTPF 258
           SRIASPLTQLTRKGTPF
Sbjct: 726 SRIASPLTQLTRKGTPF 742

[Close]

BLAST of Cmc01g0013111 vs. NCBI nr
Match: KAA0040542.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 474.6 bits (1220), Expect = 6.1e-130
Identity = 232/257 (90.27%), Postives = 242/257 (94.16%), Query Frame = 0


Query: 1   MAPAKLKELKVQLQELLDKGFIRPSVSPWGAPVLFMKKKDGSMNLCIDYRELNKVTVKSR 60
           MAPA+LKELKVQLQELLDKGFIRPSVSPWGAPVLF+KKKDGSM LCIDYRELNKVTVK+R
Sbjct: 369 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 428

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTTSCSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPKT   SRYGHYEF+VMSFGLT
Sbjct: 429 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 488

Query: 121 NAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFS 180
           N PAVFMDLMNRVFKDFLD+FVIVFIDDIL+YSKTE EHE+ LHQVL TLRANKLYAKFS
Sbjct: 489 NGPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 548

Query: 181 KCELWLKKVSFLGHVVSSEGVSVDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDF 240
           KCE WL+KV+FLGHVVSSEGVSVDPAKIE VT+WPR STVSEIRS LG  GYYRRFVEDF
Sbjct: 549 KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 608

Query: 241 SRIASPLTQLTRKGTPF 258
           SRIASPLTQLTRKGTPF
Sbjct: 609 SRIASPLTQLTRKGTPF 625

[Close]

BLAST of Cmc01g0013111 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 3.4e-51
Identity = 94/253 (37.15%), Postives = 155/253 (61.26%), Query Frame = 0


Query: 8   ELKVQLQELLDKGFIRPSVSPWGAPVLFMKKKD-----GSMNLCIDYRELNKVTVKSRYP 67
           E++ Q+QE+L++G IR S SP+ +P   + KK          + IDYR+LN++T+  RYP
Sbjct: 221 EVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYP 280

Query: 68  LPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTTSCSRYGHYEFIVMSFGLTNA 127
           +P +D++  +L     F+ IDL  G+HQ+ + +  I KT   ++ GHYE++ M FGL NA
Sbjct: 281 IPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNA 340

Query: 128 PAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFSKC 187
           PA F   MN + +  L+   +V++DDI+++S +  EH + +  V   L    L  +  KC
Sbjct: 341 PATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKC 400

Query: 188 ELWLKKVSFLGHVVSSEGVSVDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDFSR 247
           E   K+ +FLGH+V+ +G+  +P K++ + S+P  +   EIR+ LG TGYYR+F+ +++ 
Sbjct: 401 EFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYAD 460

Query: 248 IASPLTQLTRKGT 256
           IA P+T   +K T
Sbjct: 461 IAKPMTSCLKKRT 473

[Close]

BLAST of Cmc01g0013111 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 3.8e-50
Identity = 95/252 (37.70%), Postives = 158/252 (62.70%), Query Frame = 0


Query: 7   KELKVQLQELLDKGFIRPSVSPWGAPV-LFMKKKDGS----MNLCIDYRELNKVTVKSRY 66
           +E++ Q+Q++L++G IR S SP+ +P+ +  KK+D S      + IDYR+LN++TV  R+
Sbjct: 221 QEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRH 280

Query: 67  PLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTTSCSRYGHYEFIVMSFGLTN 126
           P+P +D++  +L     F+ IDL  G+HQ+ +    + KT   +++GHYE++ M FGL N
Sbjct: 281 PIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKN 340

Query: 127 APAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFSK 186
           APA F   MN + +  L+   +V++DDI+V+S +  EH   L  V   L    L  +  K
Sbjct: 341 APATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDK 400

Query: 187 CELWLKKVSFLGHVVSSEGVSVDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDFS 246
           CE   ++ +FLGHV++ +G+  +P KIE +  +P  +   EI++ LG TGYYR+F+ +F+
Sbjct: 401 CEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFA 460

Query: 247 RIASPLTQLTRK 254
            IA P+T+  +K
Sbjct: 461 DIAKPMTKCLKK 472

[Close]

BLAST of Cmc01g0013111 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.9e-49
Identity = 92/250 (36.80%), Postives = 151/250 (60.40%), Query Frame = 0


Query: 8   ELKVQLQELLDKGFIRPSVSPWGAPVLFMKKK-----DGSMNLCIDYRELNKVTVKSRYP 67
           E++ Q+ ELL  G IRPS SP+ +P+  + KK     +    + +D++ LN VT+   YP
Sbjct: 138 EVERQIDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYP 197

Query: 68  LPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTTSCSRYGHYEFIVMSFGLTNA 127
           +P I+     L  A  F+ +DL SG+HQ+ +++SDIPKT   +  G YEF+ + FGL NA
Sbjct: 198 IPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNA 257

Query: 128 PAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFSKC 187
           PA+F  +++ + ++ +     V+IDDI+V+S+    H   L  VL +L    L     K 
Sbjct: 258 PAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKS 317

Query: 188 ELWLKKVSFLGHVVSSEGVSVDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDFSR 247
                +V FLG++V+++G+  DP K+  ++  P  ++V E++  LG T YYR+F++D+++
Sbjct: 318 HFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAK 377

Query: 248 IASPLTQLTR 253
           +A PLT LTR
Sbjct: 378 VAKPLTNLTR 387

[Close]

BLAST of Cmc01g0013111 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 191.4 bits (485), Expect = 1.3e-47
Identity = 96/241 (39.83%), Postives = 142/241 (58.92%), Query Frame = 0


Query: 7   KELKVQLQELLDKGFIRPSVSPWGAPVLFMKKKDGSMNLCIDYRELNKVTVKSRYPLPRI 66
           +E+   +Q+LLD  FI PS SP  +PV+ + KKDG+  LC+DYR LNK T+   +PLPRI
Sbjct: 610 QEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRI 669

Query: 67  DDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTTSCSRYGHYEFIVMSFGLTNAPAVF 126
           D+L  ++  A +F+ +DL SGYHQ+ +   D  KT   +  G YE+ VM FGL NAP+ F
Sbjct: 670 DNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTF 729

Query: 127 MDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFSKCELWL 186
              M   F+D    FV V++DDIL++S++  EH   L  VL  L+   L  K  KC+   
Sbjct: 730 ARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFAS 789

Query: 187 KKVSFLGHVVSSEGVSVDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDFSRIASP 246
           ++  FLG+ +  + ++    K   +  +P   TV + +  LG   YYRRF+ + S+IA P
Sbjct: 790 EETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQP 848

Query: 247 L 248
           +
Sbjct: 850 I 848

[Close]

BLAST of Cmc01g0013111 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 191.4 bits (485), Expect = 1.3e-47
Identity = 96/241 (39.83%), Postives = 142/241 (58.92%), Query Frame = 0


Query: 7   KELKVQLQELLDKGFIRPSVSPWGAPVLFMKKKDGSMNLCIDYRELNKVTVKSRYPLPRI 66
           +E+   +Q+LLD  FI PS SP  +PV+ + KKDG+  LC+DYR LNK T+   +PLPRI
Sbjct: 636 QEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRI 695

Query: 67  DDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTTSCSRYGHYEFIVMSFGLTNAPAVF 126
           D+L  ++  A +F+ +DL SGYHQ+ +   D  KT   +  G YE+ VM FGL NAP+ F
Sbjct: 696 DNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTF 755

Query: 127 MDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFSKCELWL 186
              M   F+D    FV V++DDIL++S++  EH   L  VL  L+   L  K  KC+   
Sbjct: 756 ARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFAS 815

Query: 187 KKVSFLGHVVSSEGVSVDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDFSRIASP 246
           ++  FLG+ +  + ++    K   +  +P   TV + +  LG   YYRRF+ + S+IA P
Sbjct: 816 EETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQP 874

Query: 247 L 248
           +
Sbjct: 876 I 874

[Close]

BLAST of Cmc01g0013111 vs. ExPASy TrEMBL
Match: A0A5A7V6R2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00070 PE=4 SV=1)

HSP 1 Score: 476.1 bits (1224), Expect = 1.0e-130
Identity = 233/257 (90.66%), Postives = 243/257 (94.55%), Query Frame = 0


Query: 1   MAPAKLKELKVQLQELLDKGFIRPSVSPWGAPVLFMKKKDGSMNLCIDYRELNKVTVKSR 60
           MAPA+LKELKVQLQELLDKGFIRPSVSPWGAPVLF+KKKDGSM LCIDYRELNKVTVK+R
Sbjct: 137 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 196

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTTSCSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPKT   SRYGHYEF+VMSFGLT
Sbjct: 197 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 256

Query: 121 NAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFS 180
           NAPAVFMDLMNRVFKDFLD+FVIVFIDDIL+YSKTE EHE+ LHQVL TLRANKLYAKFS
Sbjct: 257 NAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 316

Query: 181 KCELWLKKVSFLGHVVSSEGVSVDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDF 240
           KCE WL+KV+FLGHVVSSEGVSVDPAKIE VT+WPR STVSEIRS LG  GYYRRFVEDF
Sbjct: 317 KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 376

Query: 241 SRIASPLTQLTRKGTPF 258
           SRIASPLTQLTRKGTPF
Sbjct: 377 SRIASPLTQLTRKGTPF 393

[Close]

BLAST of Cmc01g0013111 vs. ExPASy TrEMBL
Match: A0A5A7UHL7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004390 PE=4 SV=1)

HSP 1 Score: 475.3 bits (1222), Expect = 1.7e-130
Identity = 233/257 (90.66%), Postives = 244/257 (94.94%), Query Frame = 0


Query: 1   MAPAKLKELKVQLQELLDKGFIRPSVSPWGAPVLFMKKKDGSMNLCIDYRELNKVTVKSR 60
           MAPA+LKELKVQLQELLDKGFIRPSVSPWGAPVLF+K+KDGSM LCIDYRELNKVTVK+R
Sbjct: 568 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKEKDGSMCLCIDYRELNKVTVKNR 627

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTTSCSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPKTT  SRYGHYEF+VMSFGLT
Sbjct: 628 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTTFRSRYGHYEFVVMSFGLT 687

Query: 121 NAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFS 180
           NAPAVFMDLMNRVFKDFLD+FVIVFIDDIL+YSKTE EHE+ LHQVL TLRANKLYAKFS
Sbjct: 688 NAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 747

Query: 181 KCELWLKKVSFLGHVVSSEGVSVDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDF 240
           KCE WL+KV+FLGHVVSSEGVSVDPAKIE VT+WPR STVSEIRS LG  GYYRRFVEDF
Sbjct: 748 KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 807

Query: 241 SRIASPLTQLTRKGTPF 258
           SRIASPLTQLTRKGTPF
Sbjct: 808 SRIASPLTQLTRKGTPF 824

[Close]

BLAST of Cmc01g0013111 vs. ExPASy TrEMBL
Match: A0A5A7V4E4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72G00400 PE=4 SV=1)

HSP 1 Score: 474.9 bits (1221), Expect = 2.2e-130
Identity = 232/257 (90.27%), Postives = 243/257 (94.55%), Query Frame = 0


Query: 1   MAPAKLKELKVQLQELLDKGFIRPSVSPWGAPVLFMKKKDGSMNLCIDYRELNKVTVKSR 60
           MAPA+LKELKVQLQELLDKGFIRPSVSPWGAPVLF+KKKDGSM LCIDYRELNKVTVK+R
Sbjct: 571 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 630

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTTSCSRYGHYEFIVMSFGLT 120
           YPLP+IDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPKT   SRYGHYEF+VMSFGLT
Sbjct: 631 YPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 690

Query: 121 NAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFS 180
           NAPAVFMDLMNRVFKDFLD+FVIVFIDDIL+YSKTE EHE+ LHQVL TLRANKLYAKFS
Sbjct: 691 NAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 750

Query: 181 KCELWLKKVSFLGHVVSSEGVSVDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDF 240
           KCE WL+KV+FLGHVVSSEGVSVDPAKIE VT+WPR STVSEIRS LG  GYYRRFVEDF
Sbjct: 751 KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 810

Query: 241 SRIASPLTQLTRKGTPF 258
           SRIASPLTQLTRKGTPF
Sbjct: 811 SRIASPLTQLTRKGTPF 827

[Close]

BLAST of Cmc01g0013111 vs. ExPASy TrEMBL
Match: A0A5A7USG7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold339G002890 PE=4 SV=1)

HSP 1 Score: 474.9 bits (1221), Expect = 2.2e-130
Identity = 231/257 (89.88%), Postives = 243/257 (94.55%), Query Frame = 0


Query: 1   MAPAKLKELKVQLQELLDKGFIRPSVSPWGAPVLFMKKKDGSMNLCIDYRELNKVTVKSR 60
           MAPA+LKELKVQLQELLDKGFIRPSVSPWGAPVLF+KKKDGSM LCIDYRELNKVT+K+R
Sbjct: 486 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTIKNR 545

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTTSCSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPKT   SRYGHYEF+VMSFGLT
Sbjct: 546 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFHSRYGHYEFVVMSFGLT 605

Query: 121 NAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFS 180
           NAPAVFMDLMNRVFKDF+D+FVIVFIDDIL+YSKTE EHE+ LHQVL TLRANKLYAKFS
Sbjct: 606 NAPAVFMDLMNRVFKDFIDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 665

Query: 181 KCELWLKKVSFLGHVVSSEGVSVDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDF 240
           KCE WL+KV+FLGHVVSSEGVSVDPAKIE VT+WPR STVSEIRS LG  GYYRRFVEDF
Sbjct: 666 KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 725

Query: 241 SRIASPLTQLTRKGTPF 258
           SRIASPLTQLTRKGTPF
Sbjct: 726 SRIASPLTQLTRKGTPF 742

[Close]

BLAST of Cmc01g0013111 vs. ExPASy TrEMBL
Match: A0A5A7SSL3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold465G00540 PE=4 SV=1)

HSP 1 Score: 474.6 bits (1220), Expect = 2.9e-130
Identity = 232/257 (90.27%), Postives = 243/257 (94.55%), Query Frame = 0


Query: 1   MAPAKLKELKVQLQELLDKGFIRPSVSPWGAPVLFMKKKDGSMNLCIDYRELNKVTVKSR 60
           MAPA+LKELKVQLQELLDKGFIRPSVSPWGAPVLF+KKKDGSM LCIDYRELNKVTVK+R
Sbjct: 571 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 630

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTTSCSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPKT   SRYGHY+F+VMSFGLT
Sbjct: 631 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYKFVVMSFGLT 690

Query: 121 NAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFS 180
           NAPAVFMDLMNRVFKDFLD+FVIVFIDDIL+YSKTE EHE+ LHQVL TLRANKLYAKFS
Sbjct: 691 NAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 750

Query: 181 KCELWLKKVSFLGHVVSSEGVSVDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDF 240
           KCE WL+KV+FLGHVVSSEGVSVDPAKIE VT+WPR STVSEIRS LG  GYYRRFVEDF
Sbjct: 751 KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 810

Query: 241 SRIASPLTQLTRKGTPF 258
           SRIASPLTQLTRKGTPF
Sbjct: 811 SRIASPLTQLTRKGTPF 827

[Close]

BLAST of Cmc01g0013111 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 88.6 bits (218), Expect = 8.7e-18
Identity = 43/111 (38.74%), Postives = 67/111 (60.36%), Query Frame = 0


Query: 161 DQLHQVLGTLRANKLYAKFSKCELWLKKVSFLG--HVVSSEGVSVDPAKIEVVTSWPRSS 220
           + L  VL     ++ YA   KC     ++++LG  H++S EGVS DPAK+E +  WP   
Sbjct: 2   NHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPK 61

Query: 221 TVSEIRSILGRTGYYRRFVEDFSRIASPLTQLTRKGTPFFGTQLVSLVSKS 270
             +E+R  LG TGYYRRFV+++ +I  PLT+L +K +    T++ +L  K+
Sbjct: 62  NTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKA 111

The following BLAST results are available for this feature:

BLAST of Cmc01g0013111 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063793.1	2.1e-130	90.66	pol protein [Cucumis melo var. makuwa]	[more]
KAA0054634.1	3.6e-130	90.66	pol protein [Cucumis melo var. makuwa]	[more]
KAA0060745.1	4.6e-130	90.27	pol protein [Cucumis melo var. makuwa]	[more]
KAA0058812.1	4.6e-130	89.88	pol protein [Cucumis melo var. makuwa]	[more]
KAA0040542.1	6.1e-130	90.27	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc01g0013111 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	3.4e-51	37.15	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	3.8e-50	37.70	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	1.9e-49	36.80	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
Q99315	1.3e-47	39.83	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	1.3e-47	39.83	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc01g0013111 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V6R2	1.0e-130	90.66	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82...	[more]
A0A5A7UHL7	1.7e-130	90.66	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24...	[more]
A0A5A7V4E4	2.2e-130	90.27	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72...	[more]
A0A5A7USG7	2.2e-130	89.88	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold33...	[more]
A0A5A7SSL3	2.9e-130	90.27	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46...	[more]

BLAST of Cmc01g0013111 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	8.7e-18	38.74	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 61..196 e-value: 5.1E-81 score: 273.0
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 206..270 e-value: 1.5E-15 score: 59.0
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..121 e-value: 5.1E-81 score: 273.0
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 1..253
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 1..253
None	No IPR available	CDD	cd01647	RT_LTR	coord: 20..196 e-value: 1.54596E-90 score: 264.072
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 37..195 e-value: 2.9E-22 score: 79.3
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..260

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0013111.1	Cmc01g0013111.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding