Cmc01g0013091 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0013091
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag-pol polyprotein
Location	CMiso1.1chr01: 9643994 .. 9644545 (-)
RNA-Seq Expression	Cmc01g0013091
Synteny	Cmc01g0013091

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCCTCTGCAAACTGAAAGTCTGGGTGGAAAGAAGTATGTATTGGTTGCTGTGGATGATTATTCAAGATTTACTTGGGTTCGTTTCTTGAAAGAAAAATCAGATACTGTTAAAATTTGCATCAGTCTATGCTTGAATTTGCAATGTGAAAAAGGGAAAAGGATAATCAGGATCAGAAGTGATCATGGTAAGGAGTTTGATAATGAAGATCTAAATAGTTTCTGTCAGTTAGAAGGTATTTATCATGAATTCTCTAATCCCATAACTCTTCAACAAAATGGAGTAGTGGAACGGAAAAATAGAACTCTACAAGAAACGGCTCGAGTCATGATACATGCAAAAAATTTACCCTTGAATTTTTGGGTAGAAGCTATTGACACAGCATGCCACATTCATAACAGAATTACTACTCGATCTGGAATGGTTGTCACTTTATATGAGCATTGGAAGGGAAGAAAGCCAAACGTAAAGTATGTTCATGTATTTGGAAGTACTTGTTATATTCTAGCTGATAGAGAATATCATCGAAAGTGGGATGTGAAATCATAA

mRNA sequence

ATGGGTCCTCTGCAAACTGAAAGTCTGGGTGGAAAGAAGTATGTATTGGTTGCTGTGGATGATTATTCAAGATTTACTTGGGTTCGTTTCTTGAAAGAAAAATCAGATACTGTTAAAATTTGCATCAGTCTATGCTTGAATTTGCAATGTGAAAAAGGGAAAAGGATAATCAGGATCAGAAGTGATCATGGTAAGGAGTTTGATAATGAAGATCTAAATAGTTTCTGTCAGTTAGAAGGTATTTATCATGAATTCTCTAATCCCATAACTCTTCAACAAAATGGAGTAGTGGAACGGAAAAATAGAACTCTACAAGAAACGGCTCGAGTCATGATACATGCAAAAAATTTACCCTTGAATTTTTGGGTAGAAGCTATTGACACAGCATGCCACATTCATAACAGAATTACTACTCGATCTGGAATGGTTGTCACTTTATATGAGCATTGGAAGGGAAGAAAGCCAAACGTAAAGTATGTTCATGTATTTGGAAGTACTTGTTATATTCTAGCTGATAGAGAATATCATCGAAAGTGGGATGTGAAATCATAA

Coding sequence (CDS)

ATGGGTCCTCTGCAAACTGAAAGTCTGGGTGGAAAGAAGTATGTATTGGTTGCTGTGGATGATTATTCAAGATTTACTTGGGTTCGTTTCTTGAAAGAAAAATCAGATACTGTTAAAATTTGCATCAGTCTATGCTTGAATTTGCAATGTGAAAAAGGGAAAAGGATAATCAGGATCAGAAGTGATCATGGTAAGGAGTTTGATAATGAAGATCTAAATAGTTTCTGTCAGTTAGAAGGTATTTATCATGAATTCTCTAATCCCATAACTCTTCAACAAAATGGAGTAGTGGAACGGAAAAATAGAACTCTACAAGAAACGGCTCGAGTCATGATACATGCAAAAAATTTACCCTTGAATTTTTGGGTAGAAGCTATTGACACAGCATGCCACATTCATAACAGAATTACTACTCGATCTGGAATGGTTGTCACTTTATATGAGCATTGGAAGGGAAGAAAGCCAAACGTAAAGTATGTTCATGTATTTGGAAGTACTTGTTATATTCTAGCTGATAGAGAATATCATCGAAAGTGGGATGTGAAATCATAA

Protein sequence

MGPLQTESLGGKKYVLVAVDDYSRFTWVRFLKEKSDTVKICISLCLNLQCEKGKRIIRIRSDHGKEFDNEDLNSFCQLEGIYHEFSNPITLQQNGVVERKNRTLQETARVMIHAKNLPLNFWVEAIDTACHIHNRITTRSGMVVTLYEHWKGRKPNVKYVHVFGSTCYILADREYHRKWDVKS

Homology

[Close]

BLAST of Cmc01g0013091 vs. NCBI nr
Match: KAA0036855.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ95919.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 333.6 bits (854), Expect = 1.1e-87
Identity = 152/183 (83.06%), Postives = 165/183 (90.16%), Query Frame = 0


Query: 1   MGPLQTESLGGKKYVLVAVDDYSRFTWVRFLKEKSDTVKICISLCLNLQCEKGKRIIRIR 60
           MGP+QTESLGGKKYVLV VDDYS+FTWVRFLKEK DTVK+CISLCLNLQ EKG++IIRIR
Sbjct: 318 MGPMQTESLGGKKYVLVVVDDYSKFTWVRFLKEKFDTVKLCISLCLNLQREKGQKIIRIR 377

Query: 61  SDHGKEFDNEDLNSFCQLEGIYHEFSNPITLQQNGVVERKNRTLQETARVMIHAKNLPLN 120
           SDHGKEFDNEDLN+ CQ EGI+HEF+ PIT QQNGVVERKNR LQE ARVMIHAKN PLN
Sbjct: 378 SDHGKEFDNEDLNNLCQTEGIHHEFAAPITPQQNGVVERKNRMLQEMARVMIHAKNFPLN 437

Query: 121 FWVEAIDTACHIHNRITTRSGMVVTLYEHWKGRKPNVKYVHVFGSTCYILADREYHRKWD 180
           FW E ++TACHIH R+TTR G  +TLYE WKGRKPNVKY H+FGSTCYILADREYHRKWD
Sbjct: 438 FWAEVVNTACHIHKRVTTRFGTTITLYELWKGRKPNVKYFHIFGSTCYILADREYHRKWD 497

Query: 181 VKS 184
           VKS
Sbjct: 498 VKS 500

[Close]

BLAST of Cmc01g0013091 vs. NCBI nr
Match: KAA0048744.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 327.0 bits (837), Expect = 1.0e-85
Identity = 155/156 (99.36%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 1   MGPLQTESLGGKKYVLVAVDDYSRFTWVRFLKEKSDTVKICISLCLNLQCEKGKRIIRIR 60
           MGPLQTESLGGKKYVLVAVDDYSRFTWVRFLKEKSDTVKICISLCLNLQCEKGKRIIRIR
Sbjct: 1   MGPLQTESLGGKKYVLVAVDDYSRFTWVRFLKEKSDTVKICISLCLNLQCEKGKRIIRIR 60

Query: 61  SDHGKEFDNEDLNSFCQLEGIYHEFSNPITLQQNGVVERKNRTLQETARVMIHAKNLPLN 120
           SDHGKEFDNEDLNSFCQLEGIYHEFSNPITLQQNGVVERKNRTLQE ARVMIHAKNLPLN
Sbjct: 61  SDHGKEFDNEDLNSFCQLEGIYHEFSNPITLQQNGVVERKNRTLQEMARVMIHAKNLPLN 120

Query: 121 FWVEAIDTACHIHNRITTRSGMVVTLYEHWKGRKPN 157
           FWVEAIDTACHIHNRITTRSGMVVTLYEHWKGRKPN
Sbjct: 121 FWVEAIDTACHIHNRITTRSGMVVTLYEHWKGRKPN 156

[Close]

BLAST of Cmc01g0013091 vs. NCBI nr
Match: KAA0060126.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 306.2 bits (783), Expect = 1.9e-79
Identity = 139/174 (79.89%), Postives = 156/174 (89.66%), Query Frame = 0


Query: 10  GGKKYVLVAVDDYSRFTWVRFLKEKSDTVKICISLCLNLQCEKGKRIIRIRSDHGKEFDN 69
           GG+KYVLV VDDYSRFTWVRFLK K DT K+CI+LCLNLQ EK ++IIRIR +HG EF+N
Sbjct: 503 GGEKYVLVVVDDYSRFTWVRFLKGKLDTGKLCINLCLNLQREKSQKIIRIRCNHGNEFEN 562

Query: 70  EDLNSFCQLEGIYHEFSNPITLQQNGVVERKNRTLQETARVMIHAKNLPLNFWVEAIDTA 129
           EDLN+FCQ EGI+HEF+ PIT QQNGVVERKNRTLQE ARVMIHAKNLPLNFW EA++TA
Sbjct: 563 EDLNNFCQTEGIHHEFAAPITPQQNGVVERKNRTLQEMARVMIHAKNLPLNFWAEAVNTA 622

Query: 130 CHIHNRITTRSGMVVTLYEHWKGRKPNVKYVHVFGSTCYILADREYHRKWDVKS 184
           CHIH+R+TTRSG  VTLYE WKGRKPN+KY H+FGS CYILADR+YHRKWDVKS
Sbjct: 623 CHIHDRVTTRSGTTVTLYELWKGRKPNIKYFHIFGSICYILADRKYHRKWDVKS 676

[Close]

BLAST of Cmc01g0013091 vs. NCBI nr
Match: KAA0067564.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYJ97192.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 298.9 bits (764), Expect = 3.0e-77
Identity = 141/175 (80.57%), Postives = 153/175 (87.43%), Query Frame = 0


Query: 3   PLQTESLGGKKYVLVAVDDYSRFTWVRFLKEKSDTVKICISLCLNLQCEKGKRIIRIRSD 62
           P + +  GGKKYVLV VDDYSRFTWVRFLK KSDTVK+CISLCLNL  EKG++IIRI SD
Sbjct: 462 PCKLKVWGGKKYVLVVVDDYSRFTWVRFLKGKSDTVKLCISLCLNLLPEKGQKIIRICSD 521

Query: 63  HGKEFDNEDLNSFCQLEGIYHEFSNPITLQQNGVVERKNRTLQETARVMIHAKNLPLNFW 122
           HGKEFDNEDLN+FCQ EGI++EF+  IT QQNGVVERKNRTLQE  RVMIHAKNLPLNFW
Sbjct: 522 HGKEFDNEDLNNFCQTEGIHYEFAALITPQQNGVVERKNRTLQEMTRVMIHAKNLPLNFW 581

Query: 123 VEAIDTACHIHNRITTRSGMVVTLYEHWKGRKPNVKYVHVFGSTCYILADREYHR 178
            EA++TACHIHNRITTRSG   TLYE WKGRKPNVKY H+FGST YILADREYHR
Sbjct: 582 AEAVNTACHIHNRITTRSGTTTTLYELWKGRKPNVKYFHIFGSTYYILADREYHR 636

[Close]

BLAST of Cmc01g0013091 vs. NCBI nr
Match: KAA0054354.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK12392.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 296.2 bits (757), Expect = 1.9e-76
Identity = 139/183 (75.96%), Postives = 155/183 (84.70%), Query Frame = 0


Query: 1   MGPLQTESLGGKKYVLVAVDDYSRFTWVRFLKEKSDTVKICISLCLNLQCEKGKRIIRIR 60
           M P++TES GGK+YVLV V DYSR+TWV FL+ K+DTV+IC +LCL LQ EKGK+I RIR
Sbjct: 70  MRPMKTESHGGKRYVLVVVVDYSRYTWVCFLQGKTDTVEICKNLCLKLQREKGKKITRIR 129

Query: 61  SDHGKEFDNEDLNSFCQLEGIYHEFSNPITLQQNGVVERKNRTLQETARVMIHAKNLPLN 120
           SDHGKEFDNE  NSFC LEGI HEFS PIT QQNGVVERKNRTLQE A VMIHAKNLP+ 
Sbjct: 130 SDHGKEFDNEGFNSFCLLEGIQHEFSAPITPQQNGVVERKNRTLQEMACVMIHAKNLPMC 189

Query: 121 FWVEAIDTACHIHNRITTRSGMVVTLYEHWKGRKPNVKYVHVFGSTCYILADREYHRKWD 180
           FW EA++ ACHIHNR+T R+GM VTLYE WK RKPNVKY HVFGSTCYILADREY +KWD
Sbjct: 190 FWAEAVNIACHIHNRVTIRTGMTVTLYELWKERKPNVKYFHVFGSTCYILADREYRQKWD 249

Query: 181 VKS 184
            +S
Sbjct: 250 ARS 252

[Close]

BLAST of Cmc01g0013091 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 7.0e-29
Identity = 64/182 (35.16%), Postives = 97/182 (53.30%), Query Frame = 0


Query: 2   GPLQTESLGGKKYVLVAVDDYSRFTWVRFLKEKSDTVKICISLCLNLQCEKGKRIIRIRS 61
           GP++ ES+GG KY +  +DD SR  WV  LK K    ++       ++ E G+++ R+RS
Sbjct: 490 GPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRS 549

Query: 62  DHGKEFDNEDLNSFCQLEGIYHEFSNPITLQQNGVVERKNRTLQETARVMIHAKNLPLNF 121
           D+G E+ + +   +C   GI HE + P T Q NGV ER NRT+ E  R M+    LP +F
Sbjct: 550 DNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSF 609

Query: 122 WVEAIDTACHIHNRITTRSGMVVTLYEHWKGRKPNVKYVHVFGSTCYILADREYHRKWDV 181
           W EA+ TAC++ NR  +           W  ++ +  ++ VFG   +    +E   K D 
Sbjct: 610 WGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDD 669

Query: 182 KS 184
           KS
Sbjct: 670 KS 671

[Close]

BLAST of Cmc01g0013091 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 109.0 bits (271), Expect = 5.8e-23
Identity = 55/170 (32.35%), Postives = 92/170 (54.12%), Query Frame = 0


Query: 2   GPLQTESLGGKKYVLVAVDDYSRFTWVRFLKEKSDTVKICISLCLNLQCEKGKRIIRIRS 61
           GP+   +L  K Y ++ VD ++ +     +K KSD   +        +     +++ +  
Sbjct: 490 GPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYI 549

Query: 62  DHGKEFDNEDLNSFCQLEGIYHEFSNPITLQQNGVVERKNRTLQETARVMIHAKNLPLNF 121
           D+G+E+ + ++  FC  +GI +  + P T Q NGV ER  RT+ E AR M+    L  +F
Sbjct: 550 DNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSF 609

Query: 122 WVEAIDTACHIHNRITTRS--GMVVTLYEHWKGRKPNVKYVHVFGSTCYI 170
           W EA+ TA ++ NRI +R+      T YE W  +KP +K++ VFG+T Y+
Sbjct: 610 WGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGATVYV 659

[Close]

BLAST of Cmc01g0013091 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-10
Identity = 36/139 (25.90%), Postives = 67/139 (48.20%), Query Frame = 0


Query: 2   GPLQTESLGGKKYVLVAVDDYSRFTWVRFLKEKSD--TVKICISLCLNLQCEKGKRIIRI 61
           GP+         Y +   D+ +RF WV  L ++ +   + +  S+   ++ +   R++ I
Sbjct: 670 GPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVI 729

Query: 62  RSDHGKEFDNEDLNSFCQLEGIYHEFSNPITLQQNGVVERKNRTLQETARVMIHAKNLPL 121
           + D G E+ N+ L+ F    GI   ++     + +GV ER NRTL    R ++H   LP 
Sbjct: 730 QMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPN 789

Query: 122 NFWVEAIDTACHIHNRITT 139
           + W  A++ +  I N + +
Sbjct: 790 HLWFSAVEFSTIIRNSLVS 808

[Close]

BLAST of Cmc01g0013091 vs. ExPASy Swiss-Prot
Match: P25384 (Transposon Ty2-C Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-C PE=3 SV=2)

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-10
Identity = 36/139 (25.90%), Postives = 67/139 (48.20%), Query Frame = 0


Query: 2   GPLQTESLGGKKYVLVAVDDYSRFTWVRFLKEKSD--TVKICISLCLNLQCEKGKRIIRI 61
           GP+         Y +   D+ +RF WV  L ++ +   + +  S+   ++ +   R++ I
Sbjct: 670 GPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVI 729

Query: 62  RSDHGKEFDNEDLNSFCQLEGIYHEFSNPITLQQNGVVERKNRTLQETARVMIHAKNLPL 121
           + D G E+ N+ L+ F    GI   ++     + +GV ER NRTL    R ++H   LP 
Sbjct: 730 QMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPN 789

Query: 122 NFWVEAIDTACHIHNRITT 139
           + W  A++ +  I N + +
Sbjct: 790 HLWFSAVEFSTIIRNSLVS 808

[Close]

BLAST of Cmc01g0013091 vs. ExPASy Swiss-Prot
Match: Q12472 (Transposon Ty2-DR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-DR1 PE=1 SV=3)

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-10
Identity = 36/139 (25.90%), Postives = 67/139 (48.20%), Query Frame = 0


Query: 2   GPLQTESLGGKKYVLVAVDDYSRFTWVRFLKEKSD--TVKICISLCLNLQCEKGKRIIRI 61
           GP+         Y +   D+ +RF WV  L ++ +   + +  S+   ++ +   R++ I
Sbjct: 670 GPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVI 729

Query: 62  RSDHGKEFDNEDLNSFCQLEGIYHEFSNPITLQQNGVVERKNRTLQETARVMIHAKNLPL 121
           + D G E+ N+ L+ F    GI   ++     + +GV ER NRTL    R ++H   LP 
Sbjct: 730 QMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPN 789

Query: 122 NFWVEAIDTACHIHNRITT 139
           + W  A++ +  I N + +
Sbjct: 790 HLWFSAVEFSTIIRNSLVS 808

[Close]

BLAST of Cmc01g0013091 vs. ExPASy TrEMBL
Match: A0A5D3BA69 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G002290 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 5.3e-88
Identity = 152/183 (83.06%), Postives = 165/183 (90.16%), Query Frame = 0


Query: 1   MGPLQTESLGGKKYVLVAVDDYSRFTWVRFLKEKSDTVKICISLCLNLQCEKGKRIIRIR 60
           MGP+QTESLGGKKYVLV VDDYS+FTWVRFLKEK DTVK+CISLCLNLQ EKG++IIRIR
Sbjct: 318 MGPMQTESLGGKKYVLVVVDDYSKFTWVRFLKEKFDTVKLCISLCLNLQREKGQKIIRIR 377

Query: 61  SDHGKEFDNEDLNSFCQLEGIYHEFSNPITLQQNGVVERKNRTLQETARVMIHAKNLPLN 120
           SDHGKEFDNEDLN+ CQ EGI+HEF+ PIT QQNGVVERKNR LQE ARVMIHAKN PLN
Sbjct: 378 SDHGKEFDNEDLNNLCQTEGIHHEFAAPITPQQNGVVERKNRMLQEMARVMIHAKNFPLN 437

Query: 121 FWVEAIDTACHIHNRITTRSGMVVTLYEHWKGRKPNVKYVHVFGSTCYILADREYHRKWD 180
           FW E ++TACHIH R+TTR G  +TLYE WKGRKPNVKY H+FGSTCYILADREYHRKWD
Sbjct: 438 FWAEVVNTACHIHKRVTTRFGTTITLYELWKGRKPNVKYFHIFGSTCYILADREYHRKWD 497

Query: 181 VKS 184
           VKS
Sbjct: 498 VKS 500

[Close]

BLAST of Cmc01g0013091 vs. ExPASy TrEMBL
Match: A0A5A7U0C5 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43G00450 PE=4 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 5.0e-86
Identity = 155/156 (99.36%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 1   MGPLQTESLGGKKYVLVAVDDYSRFTWVRFLKEKSDTVKICISLCLNLQCEKGKRIIRIR 60
           MGPLQTESLGGKKYVLVAVDDYSRFTWVRFLKEKSDTVKICISLCLNLQCEKGKRIIRIR
Sbjct: 1   MGPLQTESLGGKKYVLVAVDDYSRFTWVRFLKEKSDTVKICISLCLNLQCEKGKRIIRIR 60

Query: 61  SDHGKEFDNEDLNSFCQLEGIYHEFSNPITLQQNGVVERKNRTLQETARVMIHAKNLPLN 120
           SDHGKEFDNEDLNSFCQLEGIYHEFSNPITLQQNGVVERKNRTLQE ARVMIHAKNLPLN
Sbjct: 61  SDHGKEFDNEDLNSFCQLEGIYHEFSNPITLQQNGVVERKNRTLQEMARVMIHAKNLPLN 120

Query: 121 FWVEAIDTACHIHNRITTRSGMVVTLYEHWKGRKPN 157
           FWVEAIDTACHIHNRITTRSGMVVTLYEHWKGRKPN
Sbjct: 121 FWVEAIDTACHIHNRITTRSGMVVTLYEHWKGRKPN 156

[Close]

BLAST of Cmc01g0013091 vs. ExPASy TrEMBL
Match: A0A5A7V0X1 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold39G00460 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 9.1e-80
Identity = 139/174 (79.89%), Postives = 156/174 (89.66%), Query Frame = 0


Query: 10  GGKKYVLVAVDDYSRFTWVRFLKEKSDTVKICISLCLNLQCEKGKRIIRIRSDHGKEFDN 69
           GG+KYVLV VDDYSRFTWVRFLK K DT K+CI+LCLNLQ EK ++IIRIR +HG EF+N
Sbjct: 503 GGEKYVLVVVDDYSRFTWVRFLKGKLDTGKLCINLCLNLQREKSQKIIRIRCNHGNEFEN 562

Query: 70  EDLNSFCQLEGIYHEFSNPITLQQNGVVERKNRTLQETARVMIHAKNLPLNFWVEAIDTA 129
           EDLN+FCQ EGI+HEF+ PIT QQNGVVERKNRTLQE ARVMIHAKNLPLNFW EA++TA
Sbjct: 563 EDLNNFCQTEGIHHEFAAPITPQQNGVVERKNRTLQEMARVMIHAKNLPLNFWAEAVNTA 622

Query: 130 CHIHNRITTRSGMVVTLYEHWKGRKPNVKYVHVFGSTCYILADREYHRKWDVKS 184
           CHIH+R+TTRSG  VTLYE WKGRKPN+KY H+FGS CYILADR+YHRKWDVKS
Sbjct: 623 CHIHDRVTTRSGTTVTLYELWKGRKPNIKYFHIFGSICYILADRKYHRKWDVKS 676

[Close]

BLAST of Cmc01g0013091 vs. ExPASy TrEMBL
Match: A0A5D3BBI3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold174G00740 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.4e-77
Identity = 141/175 (80.57%), Postives = 153/175 (87.43%), Query Frame = 0


Query: 3   PLQTESLGGKKYVLVAVDDYSRFTWVRFLKEKSDTVKICISLCLNLQCEKGKRIIRIRSD 62
           P + +  GGKKYVLV VDDYSRFTWVRFLK KSDTVK+CISLCLNL  EKG++IIRI SD
Sbjct: 462 PCKLKVWGGKKYVLVVVDDYSRFTWVRFLKGKSDTVKLCISLCLNLLPEKGQKIIRICSD 521

Query: 63  HGKEFDNEDLNSFCQLEGIYHEFSNPITLQQNGVVERKNRTLQETARVMIHAKNLPLNFW 122
           HGKEFDNEDLN+FCQ EGI++EF+  IT QQNGVVERKNRTLQE  RVMIHAKNLPLNFW
Sbjct: 522 HGKEFDNEDLNNFCQTEGIHYEFAALITPQQNGVVERKNRTLQEMTRVMIHAKNLPLNFW 581

Query: 123 VEAIDTACHIHNRITTRSGMVVTLYEHWKGRKPNVKYVHVFGSTCYILADREYHR 178
            EA++TACHIHNRITTRSG   TLYE WKGRKPNVKY H+FGST YILADREYHR
Sbjct: 582 AEAVNTACHIHNRITTRSGTTTTLYELWKGRKPNVKYFHIFGSTYYILADREYHR 636

[Close]

BLAST of Cmc01g0013091 vs. ExPASy TrEMBL
Match: A0A5D3CM30 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001750 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 9.4e-77
Identity = 139/183 (75.96%), Postives = 155/183 (84.70%), Query Frame = 0


Query: 1   MGPLQTESLGGKKYVLVAVDDYSRFTWVRFLKEKSDTVKICISLCLNLQCEKGKRIIRIR 60
           M P++TES GGK+YVLV V DYSR+TWV FL+ K+DTV+IC +LCL LQ EKGK+I RIR
Sbjct: 70  MRPMKTESHGGKRYVLVVVVDYSRYTWVCFLQGKTDTVEICKNLCLKLQREKGKKITRIR 129

Query: 61  SDHGKEFDNEDLNSFCQLEGIYHEFSNPITLQQNGVVERKNRTLQETARVMIHAKNLPLN 120
           SDHGKEFDNE  NSFC LEGI HEFS PIT QQNGVVERKNRTLQE A VMIHAKNLP+ 
Sbjct: 130 SDHGKEFDNEGFNSFCLLEGIQHEFSAPITPQQNGVVERKNRTLQEMACVMIHAKNLPMC 189

Query: 121 FWVEAIDTACHIHNRITTRSGMVVTLYEHWKGRKPNVKYVHVFGSTCYILADREYHRKWD 180
           FW EA++ ACHIHNR+T R+GM VTLYE WK RKPNVKY HVFGSTCYILADREY +KWD
Sbjct: 190 FWAEAVNIACHIHNRVTIRTGMTVTLYELWKERKPNVKYFHVFGSTCYILADREYRQKWD 249

Query: 181 VKS 184
            +S
Sbjct: 250 ARS 252

The following BLAST results are available for this feature:

BLAST of Cmc01g0013091 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036855.1	1.1e-87	83.06	gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ95919.1 gag-pol polyprotein [...	[more]
KAA0048744.1	1.0e-85	99.36	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0060126.1	1.9e-79	79.89	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0067564.1	3.0e-77	80.57	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0054354.1	1.9e-76	75.96	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK12392.1 gag-pol polyprotein [...	[more]

BLAST of Cmc01g0013091 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	7.0e-29	35.16	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	5.8e-23	32.35	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q12491	1.5e-10	25.90	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P25384	1.5e-10	25.90	Transposon Ty2-C Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q12472	1.5e-10	25.90	Transposon Ty2-DR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ...	[more]

BLAST of Cmc01g0013091 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BA69	5.3e-88	83.06	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G...	[more]
A0A5A7U0C5	5.0e-86	99.36	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43G0...	[more]
A0A5A7V0X1	9.1e-80	79.89	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold39G0...	[more]
A0A5D3BBI3	1.4e-77	80.57	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CM30	9.4e-77	75.96	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G...	[more]

BLAST of Cmc01g0013091 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..166 e-value: 2.6E-37 score: 130.0
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 10..88 e-value: 1.5E-11 score: 44.5
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..154 score: 17.972221
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 2..182
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 11..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0013091.1	Cmc01g0013091.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0008270	zinc ion binding