Cmc01g0013061 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0013061
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr01: 9535270 .. 9535710 (-)
RNA-Seq Expression	Cmc01g0013061
Synteny	Cmc01g0013061

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATTAGTAGCTCACTTTGATTTAGAGCTACACCAGATGGATGTGAAAACTGTGTTTCTTAATGGAAACATTGATGAGACAATTTATATGGTACAACCAGAAAACTTTGTATCTAATAATTCGAAGTCTATGGTGTGCAAATTAAAGGAATCCATCTATGGTCTCAAACAAGCCTCTCGTCAATGGTATCACAATTTTTATGAAGTAATTATCTCTTTTAGTTTTGAGGTGAATATAGTGGAAGATTGTGTATATCACAAGTTCAGTGGGAATAAATCTGTTTTCCTGGTGTTATATGTTGATGACATACTCATAGCAAGTAATGATGTAAGCTTATTGCATGACATTAAGTGGTTTCTCAAAAGAAACTTTGAGATGAAGGATCTTGGTGATGCTTCTTTTGTATTAGGAATTGAAATACTGCGAGATCGCTCTTAA

mRNA sequence

ATGGCATTAGTAGCTCACTTTGATTTAGAGCTACACCAGATGGATGTGAAAACTGTGTTTCTTAATGGAAACATTGATGAGACAATTTATATGGTACAACCAGAAAACTTTGTATCTAATAATTCGAAGTCTATGGTGTGCAAATTAAAGGAATCCATCTATGGTCTCAAACAAGCCTCTCGTCAATGGTATCACAATTTTTATGAAGTAATTATCTCTTTTAGTTTTGAGGTGAATATAGTGGAAGATTGTGTATATCACAAGTTCAGTGGGAATAAATCTGTTTTCCTGGTGTTATATGTTGATGACATACTCATAGCAAGTAATGATGTAAGCTTATTGCATGACATTAAGTGGTTTCTCAAAAGAAACTTTGAGATGAAGGATCTTGGTGATGCTTCTTTTGTATTAGGAATTGAAATACTGCGAGATCGCTCTTAA

Coding sequence (CDS)

ATGGCATTAGTAGCTCACTTTGATTTAGAGCTACACCAGATGGATGTGAAAACTGTGTTTCTTAATGGAAACATTGATGAGACAATTTATATGGTACAACCAGAAAACTTTGTATCTAATAATTCGAAGTCTATGGTGTGCAAATTAAAGGAATCCATCTATGGTCTCAAACAAGCCTCTCGTCAATGGTATCACAATTTTTATGAAGTAATTATCTCTTTTAGTTTTGAGGTGAATATAGTGGAAGATTGTGTATATCACAAGTTCAGTGGGAATAAATCTGTTTTCCTGGTGTTATATGTTGATGACATACTCATAGCAAGTAATGATGTAAGCTTATTGCATGACATTAAGTGGTTTCTCAAAAGAAACTTTGAGATGAAGGATCTTGGTGATGCTTCTTTTGTATTAGGAATTGAAATACTGCGAGATCGCTCTTAA

Protein sequence

MALVAHFDLELHQMDVKTVFLNGNIDETIYMVQPENFVSNNSKSMVCKLKESIYGLKQASRQWYHNFYEVIISFSFEVNIVEDCVYHKFSGNKSVFLVLYVDDILIASNDVSLLHDIKWFLKRNFEMKDLGDASFVLGIEILRDRS

Homology

[Close]

BLAST of Cmc01g0013061 vs. NCBI nr
Match: PNX73065.1 (retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Trifolium pratense])

HSP 1 Score: 247.3 bits (630), Expect = 8.2e-62
Identity = 118/146 (80.82%), Postives = 132/146 (90.41%), Query Frame = 0


Query: 1   MALVAHFDLELHQMDVKTVFLNGNIDETIYMVQPENFVSNNSKSMVCKLKESIYGLKQAS 60
           MALVAH+DLELHQMDVKT FLNGNIDETIYMVQPENFVS +SK+MVCKL +SIYGLKQAS
Sbjct: 531 MALVAHYDLELHQMDVKTAFLNGNIDETIYMVQPENFVSGDSKNMVCKLTKSIYGLKQAS 590

Query: 61  RQWYHNFYEVIISFSFEVNIVEDCVYHKFSGNKSVFLVLYVDDILIASNDVSLLHDIKWF 120
           RQWYH F+EV++SF FEVNIVEDCVY KFSG K +FLVLYVDDIL+A+ND+ +LH+ K F
Sbjct: 591 RQWYHKFHEVVLSFGFEVNIVEDCVYQKFSGRKCIFLVLYVDDILLAANDIGILHETKKF 650

Query: 121 LKRNFEMKDLGDASFVLGIEILRDRS 147
           L R FEMKDLGDASFVLGI+I RDRS
Sbjct: 651 LSRTFEMKDLGDASFVLGIQIHRDRS 676

[Close]

BLAST of Cmc01g0013061 vs. NCBI nr
Match: CDF77009.1 (hypothetical transposable element-related protein, partial [Boechera divaricarpa])

HSP 1 Score: 245.0 bits (624), Expect = 4.1e-61
Identity = 116/146 (79.45%), Postives = 136/146 (93.15%), Query Frame = 0


Query: 1    MALVAHFDLELHQMDVKTVFLNGNIDETIYMVQPENFVSNNSKSMVCKLKESIYGLKQAS 60
            MALVAH+DLELHQMDVKT FLNG+IDETIYM QPENFVS++SK MVCKL +SIYGLKQAS
Sbjct: 925  MALVAHYDLELHQMDVKTAFLNGDIDETIYMEQPENFVSHDSKKMVCKLNKSIYGLKQAS 984

Query: 61   RQWYHNFYEVIISFSFEVNIVEDCVYHKFSGNKSVFLVLYVDDILIASNDVSLLHDIKWF 120
            RQWYH F++VIISF FEVN+VEDCVY KFSG+K +FLVLYVDDIL+A+ND+++LH+IK F
Sbjct: 985  RQWYHKFHKVIISFGFEVNLVEDCVYQKFSGSKLIFLVLYVDDILLATNDINMLHEIKNF 1044

Query: 121  LKRNFEMKDLGDASFVLGIEILRDRS 147
            LK NFEMKDLG+ASFVLGI+I+RDR+
Sbjct: 1045 LKDNFEMKDLGEASFVLGIQIIRDRN 1070

[Close]

BLAST of Cmc01g0013061 vs. NCBI nr
Match: KYP49134.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 245.0 bits (624), Expect = 4.1e-61
Identity = 116/146 (79.45%), Postives = 135/146 (92.47%), Query Frame = 0


Query: 1   MALVAHFDLELHQMDVKTVFLNGNIDETIYMVQPENFVSNNSKSMVCKLKESIYGLKQAS 60
           MALVAH+DLELHQMDVKT FLNG+I+ETIYM+QPENFVS +SKSMVCKLK+SIYGLKQAS
Sbjct: 107 MALVAHYDLELHQMDVKTAFLNGDIEETIYMMQPENFVSGDSKSMVCKLKKSIYGLKQAS 166

Query: 61  RQWYHNFYEVIISFSFEVNIVEDCVYHKFSGNKSVFLVLYVDDILIASNDVSLLHDIKWF 120
           RQWYH F++VI S+ FE NIV+DCVYHKFSG+K +FLVLYVDDIL+AS+D+ LLH+ K F
Sbjct: 167 RQWYHKFHQVITSYGFEANIVDDCVYHKFSGSKYIFLVLYVDDILLASSDIGLLHETKRF 226

Query: 121 LKRNFEMKDLGDASFVLGIEILRDRS 147
           L +NFEMKDLG+ASFVLGI+ILRDRS
Sbjct: 227 LTKNFEMKDLGEASFVLGIKILRDRS 252

[Close]

BLAST of Cmc01g0013061 vs. NCBI nr
Match: KYP39716.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 245.0 bits (624), Expect = 4.1e-61
Identity = 116/146 (79.45%), Postives = 135/146 (92.47%), Query Frame = 0


Query: 1    MALVAHFDLELHQMDVKTVFLNGNIDETIYMVQPENFVSNNSKSMVCKLKESIYGLKQAS 60
            MALVAH+DLELHQMDVKT FLNG+I+ETIYM+QPENFVS +SKSMVCKLK+SIYGLKQAS
Sbjct: 904  MALVAHYDLELHQMDVKTAFLNGDIEETIYMMQPENFVSGDSKSMVCKLKKSIYGLKQAS 963

Query: 61   RQWYHNFYEVIISFSFEVNIVEDCVYHKFSGNKSVFLVLYVDDILIASNDVSLLHDIKWF 120
            RQWYH F++VI S+ FE NIV+DCVYHKFSG+K +FLVLYVDDIL+AS+D+ LLH+ K F
Sbjct: 964  RQWYHKFHQVITSYGFEANIVDDCVYHKFSGSKYIFLVLYVDDILLASSDIGLLHETKRF 1023

Query: 121  LKRNFEMKDLGDASFVLGIEILRDRS 147
            L +NFEMKDLG+ASFVLGI+ILRDRS
Sbjct: 1024 LTKNFEMKDLGEASFVLGIKILRDRS 1049

[Close]

BLAST of Cmc01g0013061 vs. NCBI nr
Match: RDX68205.1 (hypothetical protein CR513_52825, partial [Mucuna pruriens])

HSP 1 Score: 243.8 bits (621), Expect = 9.1e-61
Identity = 116/146 (79.45%), Postives = 133/146 (91.10%), Query Frame = 0


Query: 1   MALVAHFDLELHQMDVKTVFLNGNIDETIYMVQPENFVSNNSKSMVCKLKESIYGLKQAS 60
           MALVAHFDLELHQMDVKT FLNG+IDETIYM+QPENFVSN SKSMVCKLK+SIY LKQAS
Sbjct: 1   MALVAHFDLELHQMDVKTAFLNGDIDETIYMMQPENFVSNESKSMVCKLKKSIYDLKQAS 60

Query: 61  RQWYHNFYEVIISFSFEVNIVEDCVYHKFSGNKSVFLVLYVDDILIASNDVSLLHDIKWF 120
           RQWYH F++VI S+ FE N+V+DCVYHKFSG+K +FLVLYV+DIL+AS+D  LLH+ K F
Sbjct: 61  RQWYHKFHQVITSYGFEANVVDDCVYHKFSGSKYIFLVLYVNDILLASSDTGLLHETKRF 120

Query: 121 LKRNFEMKDLGDASFVLGIEILRDRS 147
           L +NFEMKDLG+ASFVLGI+ILRDRS
Sbjct: 121 LTKNFEMKDLGEASFVLGIQILRDRS 146

[Close]

BLAST of Cmc01g0013061 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.4e-32
Identity = 71/147 (48.30%), Postives = 99/147 (67.35%), Query Frame = 0


Query: 1    MALVAHFDLELHQMDVKTVFLNGNIDETIYMVQPENFVSNNSKSMVCKLKESIYGLKQAS 60
            ++L A  DLE+ Q+DVKT FL+G+++E IYM QPE F     K MVCKL +S+YGLKQA 
Sbjct: 908  LSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAP 967

Query: 61   RQWYHNFYEVIISFSFEVNIVEDCVYHK-FSGNKSVFLVLYVDDILIASNDVSLLHDIKW 120
            RQWY  F   + S ++     + CVY K FS N  + L+LYVDD+LI   D  L+  +K 
Sbjct: 968  RQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKG 1027

Query: 121  FLKRNFEMKDLGDASFVLGIEILRDRS 147
             L ++F+MKDLG A  +LG++I+R+R+
Sbjct: 1028 DLSKSFDMKDLGPAQQILGMKIVRERT 1054

[Close]

BLAST of Cmc01g0013061 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 114.8 bits (286), Expect = 8.4e-25
Identity = 57/143 (39.86%), Postives = 93/143 (65.03%), Query Frame = 0


Query: 1    MALVAHFDLELHQMDVKTVFLNGNIDETIYMVQPENFVSNNSKSMVCKLKESIYGLKQAS 60
            ++LV  ++L++HQMDVKT FLNG + E IYM  P+    N+    VCKL ++IYGLKQA+
Sbjct: 988  LSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGISCNSDN--VCKLNKAIYGLKQAA 1047

Query: 61   RQWYHNFYEVIISFSFEVNIVEDCVY--HKFSGNKSVFLVLYVDDILIASNDVSLLHDIK 120
            R W+  F + +    F  + V+ C+Y   K + N++++++LYVDD++IA+ D++ +++ K
Sbjct: 1048 RCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFK 1107

Query: 121  WFLKRNFEMKDLGDASFVLGIEI 142
             +L   F M DL +    +GI I
Sbjct: 1108 RYLMEKFRMTDLNEIKHFIGIRI 1128

[Close]

BLAST of Cmc01g0013061 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 5.6e-21
Identity = 48/133 (36.09%), Postives = 78/133 (58.65%), Query Frame = 0


Query: 11   LHQMDVKTVFLNGNIDETIYMVQPENFVSNNSKSMVCKLKESIYGLKQASRQWYHNFYEV 70
            + Q+DV   FL G + + +YM QP  F+  +  + VCKL++++YGLKQA R WY      
Sbjct: 1061 IRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNY 1120

Query: 71   IISFSFEVNIVEDCVYHKFSGNKSVFLVLYVDDILIASNDVSLLHDIKWFLKRNFEMKDL 130
            +++  F  ++ +  ++    G   V++++YVDDILI  ND +LLH+    L + F +KD 
Sbjct: 1121 LLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDH 1180

Query: 131  GDASFVLGIEILR 144
             +  + LGIE  R
Sbjct: 1181 EELHYFLGIEAKR 1193

[Close]

BLAST of Cmc01g0013061 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.4e-19
Identity = 48/133 (36.09%), Postives = 74/133 (55.64%), Query Frame = 0


Query: 11   LHQMDVKTVFLNGNIDETIYMVQPENFVSNNSKSMVCKLKESIYGLKQASRQWYHNFYEV 70
            + Q+DV   FL G + + +YM QP  FV  +    VC+L+++IYGLKQA R WY      
Sbjct: 1044 IRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTY 1103

Query: 71   IISFSFEVNIVEDCVYHKFSGNKSVFLVLYVDDILIASNDVSLLHDIKWFLKRNFEMKDL 130
            +++  F  +I +  ++    G   +++++YVDDILI  ND  LL      L + F +K+ 
Sbjct: 1104 LLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEH 1163

Query: 131  GDASFVLGIEILR 144
             D  + LGIE  R
Sbjct: 1164 EDLHYFLGIEAKR 1176

[Close]

BLAST of Cmc01g0013061 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 80.9 bits (198), Expect = 1.3e-14
Identity = 43/128 (33.59%), Postives = 68/128 (53.12%), Query Frame = 0


Query: 14  MDVKTVFLNGNIDETIYMVQPENFVSNNSKSMVCKLKESIYGLKQASRQWYHNFYEVIIS 73
           MDV T FLN  +DE IY+ QP  FV+  +   V +L   +YGLKQA   W  +    +  
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 74  FSFEVNIVEDCVYHKFSGNKSVFLVLYVDDILIASNDVSLLHDIKWFLKRNFEMKDLGDA 133
             F  +  E  +Y + + +  +++ +YVDD+L+A+    +   +K  L + + MKDLG  
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 134 SFVLGIEI 142
              LG+ I
Sbjct: 121 DKFLGLNI 128

[Close]

BLAST of Cmc01g0013061 vs. ExPASy TrEMBL
Match: A0A2K3L3F6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g028963 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 4.0e-62
Identity = 118/146 (80.82%), Postives = 132/146 (90.41%), Query Frame = 0


Query: 1   MALVAHFDLELHQMDVKTVFLNGNIDETIYMVQPENFVSNNSKSMVCKLKESIYGLKQAS 60
           MALVAH+DLELHQMDVKT FLNGNIDETIYMVQPENFVS +SK+MVCKL +SIYGLKQAS
Sbjct: 531 MALVAHYDLELHQMDVKTAFLNGNIDETIYMVQPENFVSGDSKNMVCKLTKSIYGLKQAS 590

Query: 61  RQWYHNFYEVIISFSFEVNIVEDCVYHKFSGNKSVFLVLYVDDILIASNDVSLLHDIKWF 120
           RQWYH F+EV++SF FEVNIVEDCVY KFSG K +FLVLYVDDIL+A+ND+ +LH+ K F
Sbjct: 591 RQWYHKFHEVVLSFGFEVNIVEDCVYQKFSGRKCIFLVLYVDDILLAANDIGILHETKKF 650

Query: 121 LKRNFEMKDLGDASFVLGIEILRDRS 147
           L R FEMKDLGDASFVLGI+I RDRS
Sbjct: 651 LSRTFEMKDLGDASFVLGIQIHRDRS 676

[Close]

BLAST of Cmc01g0013061 vs. ExPASy TrEMBL
Match: A0A151RB35 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_038971 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 2.0e-61
Identity = 116/146 (79.45%), Postives = 135/146 (92.47%), Query Frame = 0


Query: 1    MALVAHFDLELHQMDVKTVFLNGNIDETIYMVQPENFVSNNSKSMVCKLKESIYGLKQAS 60
            MALVAH+DLELHQMDVKT FLNG+I+ETIYM+QPENFVS +SKSMVCKLK+SIYGLKQAS
Sbjct: 904  MALVAHYDLELHQMDVKTAFLNGDIEETIYMMQPENFVSGDSKSMVCKLKKSIYGLKQAS 963

Query: 61   RQWYHNFYEVIISFSFEVNIVEDCVYHKFSGNKSVFLVLYVDDILIASNDVSLLHDIKWF 120
            RQWYH F++VI S+ FE NIV+DCVYHKFSG+K +FLVLYVDDIL+AS+D+ LLH+ K F
Sbjct: 964  RQWYHKFHQVITSYGFEANIVDDCVYHKFSGSKYIFLVLYVDDILLASSDIGLLHETKRF 1023

Query: 121  LKRNFEMKDLGDASFVLGIEILRDRS 147
            L +NFEMKDLG+ASFVLGI+ILRDRS
Sbjct: 1024 LTKNFEMKDLGEASFVLGIKILRDRS 1049

[Close]

BLAST of Cmc01g0013061 vs. ExPASy TrEMBL
Match: A0A151S300 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_029166 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 2.0e-61
Identity = 116/146 (79.45%), Postives = 135/146 (92.47%), Query Frame = 0


Query: 1   MALVAHFDLELHQMDVKTVFLNGNIDETIYMVQPENFVSNNSKSMVCKLKESIYGLKQAS 60
           MALVAH+DLELHQMDVKT FLNG+I+ETIYM+QPENFVS +SKSMVCKLK+SIYGLKQAS
Sbjct: 107 MALVAHYDLELHQMDVKTAFLNGDIEETIYMMQPENFVSGDSKSMVCKLKKSIYGLKQAS 166

Query: 61  RQWYHNFYEVIISFSFEVNIVEDCVYHKFSGNKSVFLVLYVDDILIASNDVSLLHDIKWF 120
           RQWYH F++VI S+ FE NIV+DCVYHKFSG+K +FLVLYVDDIL+AS+D+ LLH+ K F
Sbjct: 167 RQWYHKFHQVITSYGFEANIVDDCVYHKFSGSKYIFLVLYVDDILLASSDIGLLHETKRF 226

Query: 121 LKRNFEMKDLGDASFVLGIEILRDRS 147
           L +NFEMKDLG+ASFVLGI+ILRDRS
Sbjct: 227 LTKNFEMKDLGEASFVLGIKILRDRS 252

[Close]

BLAST of Cmc01g0013061 vs. ExPASy TrEMBL
Match: V5ZTC4 (Hypothetical transposable element-related protein (Fragment) OS=Boechera divaricarpa OX=115915 GN=TER1 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 2.0e-61
Identity = 116/146 (79.45%), Postives = 136/146 (93.15%), Query Frame = 0


Query: 1    MALVAHFDLELHQMDVKTVFLNGNIDETIYMVQPENFVSNNSKSMVCKLKESIYGLKQAS 60
            MALVAH+DLELHQMDVKT FLNG+IDETIYM QPENFVS++SK MVCKL +SIYGLKQAS
Sbjct: 925  MALVAHYDLELHQMDVKTAFLNGDIDETIYMEQPENFVSHDSKKMVCKLNKSIYGLKQAS 984

Query: 61   RQWYHNFYEVIISFSFEVNIVEDCVYHKFSGNKSVFLVLYVDDILIASNDVSLLHDIKWF 120
            RQWYH F++VIISF FEVN+VEDCVY KFSG+K +FLVLYVDDIL+A+ND+++LH+IK F
Sbjct: 985  RQWYHKFHKVIISFGFEVNLVEDCVYQKFSGSKLIFLVLYVDDILLATNDINMLHEIKNF 1044

Query: 121  LKRNFEMKDLGDASFVLGIEILRDRS 147
            LK NFEMKDLG+ASFVLGI+I+RDR+
Sbjct: 1045 LKDNFEMKDLGEASFVLGIQIIRDRN 1070

[Close]

BLAST of Cmc01g0013061 vs. ExPASy TrEMBL
Match: A0A371EQ70 (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_52825 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 4.4e-61
Identity = 116/146 (79.45%), Postives = 133/146 (91.10%), Query Frame = 0


Query: 1   MALVAHFDLELHQMDVKTVFLNGNIDETIYMVQPENFVSNNSKSMVCKLKESIYGLKQAS 60
           MALVAHFDLELHQMDVKT FLNG+IDETIYM+QPENFVSN SKSMVCKLK+SIY LKQAS
Sbjct: 1   MALVAHFDLELHQMDVKTAFLNGDIDETIYMMQPENFVSNESKSMVCKLKKSIYDLKQAS 60

Query: 61  RQWYHNFYEVIISFSFEVNIVEDCVYHKFSGNKSVFLVLYVDDILIASNDVSLLHDIKWF 120
           RQWYH F++VI S+ FE N+V+DCVYHKFSG+K +FLVLYV+DIL+AS+D  LLH+ K F
Sbjct: 61  RQWYHKFHQVITSYGFEANVVDDCVYHKFSGSKYIFLVLYVNDILLASSDTGLLHETKRF 120

Query: 121 LKRNFEMKDLGDASFVLGIEILRDRS 147
           L +NFEMKDLG+ASFVLGI+ILRDRS
Sbjct: 121 LTKNFEMKDLGEASFVLGIQILRDRS 146

[Close]

BLAST of Cmc01g0013061 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 113.6 bits (283), Expect = 1.3e-25
Identity = 58/147 (39.46%), Postives = 91/147 (61.90%), Query Frame = 0


Query: 1   MALVAHFDLELHQMDVKTVFLNGNIDETIYMVQPENFVSNNSKSM----VCKLKESIYGL 60
           +A+ A ++  LHQ+D+   FLNG++DE IYM  P  + +    S+    VC LK+SIYGL
Sbjct: 180 LAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGL 239

Query: 61  KQASRQWYHNFYEVIISFSFEVNIVEDCVYHKFSGNKSVFLVLYVDDILIASNDVSLLHD 120
           KQASRQW+  F   +I F F  +  +   + K +    + +++YVDDI+I SN+ + + +
Sbjct: 240 KQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDE 299

Query: 121 IKWFLKRNFEMKDLGDASFVLGIEILR 144
           +K  LK  F+++DLG   + LG+EI R
Sbjct: 300 LKSQLKSCFKLRDLGPLKYFLGLEIAR 326

[Close]

BLAST of Cmc01g0013061 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 44.3 bits (103), Expect = 9.9e-05
Identity = 21/47 (44.68%), Postives = 32/47 (68.09%), Query Frame = 0


Query: 95  VFLVLYVDDILIASNDVSLLHDIKWFLKRNFEMKDLGDASFVLGIEI 142
           ++L+LYVDDIL+  +  +LL+ + + L   F MKDLG   + LGI+I
Sbjct: 1   MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQI 47

The following BLAST results are available for this feature:

BLAST of Cmc01g0013061 vs. NCBI nr


Match Name	E-value	Identity	Description
PNX73065.1	8.2e-62	80.82	retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Trifolium ...	[more]
CDF77009.1	4.1e-61	79.45	hypothetical transposable element-related protein, partial [Boechera divaricarpa...	[more]
KYP49134.1	4.1e-61	79.45	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
KYP39716.1	4.1e-61	79.45	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
RDX68205.1	9.1e-61	79.45	hypothetical protein CR513_52825, partial [Mucuna pruriens]	[more]

BLAST of Cmc01g0013061 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.4e-32	48.30	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	8.4e-25	39.86	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	5.6e-21	36.09	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.4e-19	36.09	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P25600	1.3e-14	33.59	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc01g0013061 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2K3L3F6	4.0e-62	80.82	Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Trifol...	[more]
A0A151RB35	2.0e-61	79.45	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=...	[more]
A0A151S300	2.0e-61	79.45	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=...	[more]
V5ZTC4	2.0e-61	79.45	Hypothetical transposable element-related protein (Fragment) OS=Boechera divaric...	[more]
A0A371EQ70	4.4e-61	79.45	Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) OS=Muc...	[more]

BLAST of Cmc01g0013061 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.3e-25	39.46	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	9.9e-05	44.68	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 2..144 e-value: 2.7E-41 score: 141.8
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 2..144
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 11..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0013061.1	Cmc01g0013061.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0004491	methylmalonate-semialdehyde dehydrogenase (acylating) activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding