Cmc01g0012671 (gene) Melon (Charmono) v1.1

Overview
NameCmc01g0012671
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag-pol polyprotein
LocationCMiso1.1chr01: 8974479 .. 8975381 (+)
RNA-Seq ExpressionCmc01g0012671
SyntenyCmc01g0012671
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTTAAAAGTGCCTTTCTAAATGGGTACTTAAATGAAGAAGTATATGTTGCTCAACCTAATGGTTTTATTGATCTAGTTTATCCTCAGTATGTGTGTAAATTTAATAAAGCCTTATATGGGCTCATGCAAGCTCCTAGAGCATGGTATGAACGTGTCACTATCTACCTTAGTCACAAAGGGTATTTTAGAGGAGGTGCTTATAAGACTCTATTTATTAATAAATCTAAAATAGATATGATTGTTGCACAAATATATGTTGATGATATCATATTTGGTGGATTTCCAAAAAAGTTATTTAATAACTTTATTGATATTATGCAATCTGAATTTGAAATGAGCATAATTGGGGAGCTGTCTTGTTTCCTTGGAATTTTTATATCACACAAGAAATATGCTAAGAATATTGTTAAAAAGTTCGAACTTGATAAATCACAACAAAAGCGAACTCCAGCTGTGACACATGTTAAAATTACCAAAGATAGTGATGGAGACATTGTTGATAATAAACTATACAGAAGCATGATTGGTAGCTTGCTTTACTTAACTACCAGTAGACGTGACGTTGCTTATATTGTGGGAGTATGTGCTCGTATTCAATCTAATCCCCGAGTTTCTCATCTTGTTGCTATTAAAAGAATCATCAAATATGTTAATGGTACCAGTGACTTTGGAGTTCTCTACTTCTATAATATGAACTCTATTCTAGTTGACTATTATGATGCAGATTGGGCAGGTTGCTTAGAGGTCAGGAAAAGTACTTCAAAAGGATGTTTCTTCCTTGGTAACAACATGATTTTCTGGTTCAATAAAAAGAAAATTTGTGTTTCTTTATCTACAACAGAAGCTAAATATATAGCAGTTGGAAGTGGATGCACTCAGCTAATGTGGATGAAATAG

mRNA sequence

ATGGATGTTAAAAGTGCCTTTCTAAATGGGTACTTAAATGAAGAAGTATATGTTGCTCAACCTAATGGTTTTATTGATCTAGTTTATCCTCAGTATGTGTGTAAATTTAATAAAGCCTTATATGGGCTCATGCAAGCTCCTAGAGCATGGTATGAACGTGTCACTATCTACCTTAGTCACAAAGGGTATTTTAGAGGAGGTGCTTATAAGACTCTATTTATTAATAAATCTAAAATAGATATGATTGTTGCACAAATATATGTTGATGATATCATATTTGGTGGATTTCCAAAAAAGTTATTTAATAACTTTATTGATATTATGCAATCTGAATTTGAAATGAGCATAATTGGGGAGCTGTCTTGTTTCCTTGGAATTTTTATATCACACAAGAAATATGCTAAGAATATTGTTAAAAAGTTCGAACTTGATAAATCACAACAAAAGCGAACTCCAGCTGTGACACATGTTAAAATTACCAAAGATAGTGATGGAGACATTGTTGATAATAAACTATACAGAAGCATGATTGGTAGCTTGCTTTACTTAACTACCAGTAGACGTGACGTTGCTTATATTGTGGGAGTATGTGCTCGTATTCAATCTAATCCCCGAGTTTCTCATCTTGTTGCTATTAAAAGAATCATCAAATATGTTAATGGTACCAGTGACTTTGGAGTTCTCTACTTCTATAATATGAACTCTATTCTAGTTGACTATTATGATGCAGATTGGGCAGGTTGCTTAGAGGTCAGGAAAAGTACTTCAAAAGGATGTTTCTTCCTTGGTAACAACATGATTTTCTGGTTCAATAAAAAGAAAATTTGTGTTTCTTTATCTACAACAGAAGCTAAATATATAGCAGTTGGAAGTGGATGCACTCAGCTAATGTGGATGAAATAG

Coding sequence (CDS)

ATGGATGTTAAAAGTGCCTTTCTAAATGGGTACTTAAATGAAGAAGTATATGTTGCTCAACCTAATGGTTTTATTGATCTAGTTTATCCTCAGTATGTGTGTAAATTTAATAAAGCCTTATATGGGCTCATGCAAGCTCCTAGAGCATGGTATGAACGTGTCACTATCTACCTTAGTCACAAAGGGTATTTTAGAGGAGGTGCTTATAAGACTCTATTTATTAATAAATCTAAAATAGATATGATTGTTGCACAAATATATGTTGATGATATCATATTTGGTGGATTTCCAAAAAAGTTATTTAATAACTTTATTGATATTATGCAATCTGAATTTGAAATGAGCATAATTGGGGAGCTGTCTTGTTTCCTTGGAATTTTTATATCACACAAGAAATATGCTAAGAATATTGTTAAAAAGTTCGAACTTGATAAATCACAACAAAAGCGAACTCCAGCTGTGACACATGTTAAAATTACCAAAGATAGTGATGGAGACATTGTTGATAATAAACTATACAGAAGCATGATTGGTAGCTTGCTTTACTTAACTACCAGTAGACGTGACGTTGCTTATATTGTGGGAGTATGTGCTCGTATTCAATCTAATCCCCGAGTTTCTCATCTTGTTGCTATTAAAAGAATCATCAAATATGTTAATGGTACCAGTGACTTTGGAGTTCTCTACTTCTATAATATGAACTCTATTCTAGTTGACTATTATGATGCAGATTGGGCAGGTTGCTTAGAGGTCAGGAAAAGTACTTCAAAAGGATGTTTCTTCCTTGGTAACAACATGATTTTCTGGTTCAATAAAAAGAAAATTTGTGTTTCTTTATCTACAACAGAAGCTAAATATATAGCAGTTGGAAGTGGATGCACTCAGCTAATGTGGATGAAATAG

Protein sequence

MDVKSAFLNGYLNEEVYVAQPNGFIDLVYPQYVCKFNKALYGLMQAPRAWYERVTIYLSHKGYFRGGAYKTLFINKSKIDMIVAQIYVDDIIFGGFPKKLFNNFIDIMQSEFEMSIIGELSCFLGIFISHKKYAKNIVKKFELDKSQQKRTPAVTHVKITKDSDGDIVDNKLYRSMIGSLLYLTTSRRDVAYIVGVCARIQSNPRVSHLVAIKRIIKYVNGTSDFGVLYFYNMNSILVDYYDADWAGCLEVRKSTSKGCFFLGNNMIFWFNKKKICVSLSTTEAKYIAVGSGCTQLMWMK
Homology
[Close]
BLAST of Cmc01g0012671 vs. NCBI nr
Match: TYK23188.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 429.1 bits (1102), Expect = 3.1e-116
Identity = 205/309 (66.34%), Postives = 250/309 (80.91%), Query Frame = 0 

Query: 1   MDVKSAFLNGYLNEEVYVAQPNGFIDLVYPQYVCKFNKALYGLMQAPRAWYERVTIYLSH 60
           MDVKSAFLNGYLNEEVYVAQP  F+D  +P++V K NKALYGL QAPR WYER+T+YL  
Sbjct: 1   MDVKSAFLNGYLNEEVYVAQPKDFVDSEHPKHVYKLNKALYGLKQAPRVWYERLTVYLRG 60

Query: 61  KGYFRGGAYKTLFINKSKIDMIVAQIYVDDIIFGGFPKKLFNNFIDIMQSEFEMSIIGEL 120
           KGY RG   KTLFI++    ++VAQIYVDDIIFGGFP  L NNFI+IMQSEFEMS++GEL
Sbjct: 61  KGYSRGEIDKTLFIHRKSDQLLVAQIYVDDIIFGGFPHDLVNNFINIMQSEFEMSMVGEL 120

Query: 121 SCFLG---------IFISHKKYAKNIVKKFELDKSQQKRTPAVTHVKITKDSDGDIVDNK 180
           SCFLG         I IS KKYAKN+ KKF L++++ KRTPA THVK+T+D+DG  VD+K
Sbjct: 121 SCFLGFQIKQKNDDIIISQKKYAKNMAKKFGLEQARNKRTPAATHVKLTRDNDGAEVDHK 180

Query: 181 LYRSMIGSLLYLTTSRRDVAYIVGVCARIQSNPRVSHLVAIKRIIKYVNGTSDFGVLYFY 240
           LYRS++ +LLYLT SR D+AY VG+CAR Q++PR+SHL A+KRI+KYV+GT+DFG++Y Y
Sbjct: 181 LYRSIVSNLLYLTASRPDIAYAVGICARYQADPRISHLEAVKRILKYVHGTNDFGMMYSY 240

Query: 241 NMNSILVDYYDADWAGCLEVRKSTSKGCFFLGNNMIFWFNKKKICVSLSTTEAKYIAVGS 300
           +    LV Y DADWAG  + RKSTS GCFFLGNN+I+W +KK+ CVSLSTTEA+YI  GS
Sbjct: 241 DTTPTLVGYCDADWAGLADDRKSTSGGCFFLGNNLIYWLSKKQNCVSLSTTEAEYIVAGS 300

[Close]
BLAST of Cmc01g0012671 vs. NCBI nr
Match: KAA0054623.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 421.0 bits (1081), Expect = 8.6e-114
Identity = 208/309 (67.31%), Postives = 243/309 (78.64%), Query Frame = 0 

Query: 1   MDVKSAFLNGYLNEEVYVAQPNGFIDLVYPQYVCKFNKALYGLMQAPRAWYERVTIYLSH 60
           MDVKSAFLNGYLNEEVYVAQP  FID  +P  + K NKALYGL QAP  WYE++T+YL  
Sbjct: 507 MDVKSAFLNGYLNEEVYVAQPKRFIDSEFPHKLYKLNKALYGLKQAPLTWYEQLTMYLGE 566

Query: 61  KGYFRGGAYKTLFINKSKIDMIVAQIYVDDIIFGGFPKKLFNNFIDIMQSEFEMSIIGEL 120
           +GY RG   KTL IN++  D+IVAQIYVDDIIFGGFPK L NNFI+IM SEFEMS++GEL
Sbjct: 567 RGYSRGETDKTLLINRTSTDLIVAQIYVDDIIFGGFPKTLVNNFINIMTSEFEMSLVGEL 626

Query: 121 SCFLGI---------FISHKKYAKNIVKKFELDKSQQKRTPAVTHVKITKDSDGDIVDNK 180
           SCFLG+         F+S +KYAKN+VKKF LD+SQ KRTPA TH KITKD+ G  VD+K
Sbjct: 627 SCFLGLQIKQRSEGMFMSQEKYAKNLVKKFGLDQSQYKRTPAATHAKITKDTVGTAVDHK 686

Query: 181 LYRSMIGSLLYLTTSRRDVAYIVGVCARIQSNPRVSHLVAIKRIIKYVNGTSDFGVLYFY 240
           LYRSMIGS LYL  SR D+AY V +CAR QS+P  SHL A+KRIIKYV+GT+DFG+LY Y
Sbjct: 687 LYRSMIGSHLYLKASRPDIAYAVEICARYQSDPCTSHLNAVKRIIKYVHGTTDFGILYSY 746

Query: 241 NMNSILVDYYDADWAGCLEVRKSTSKGCFFLGNNMIFWFNKKKICVSLSTTEAKYIAVGS 300
           +  S LV Y DADWAG  + RKSTS GCFFLGNN++ WF+KK+ CVSLSTTE +YI  GS
Sbjct: 747 DTFSKLVGYCDADWAGSADDRKSTSGGCFFLGNNLVSWFSKKQNCVSLSTTEVEYITAGS 806

[Close]
BLAST of Cmc01g0012671 vs. NCBI nr
Match: TYK29824.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 411.0 bits (1055), Expect = 8.9e-111
Identity = 196/292 (67.12%), Postives = 236/292 (80.82%), Query Frame = 0 

Query: 1   MDVKSAFLNGYLNEEVYVAQPNGFIDLVYPQYVCKFNKALYGLMQAPRAWYERVTIYLSH 60
           MDVKSAFLNGYLNEEV+VAQP GF+D  +PQ+V K NKALYGL QAPRAWY+R+TIYL  
Sbjct: 410 MDVKSAFLNGYLNEEVFVAQPKGFVDSEFPQHVYKLNKALYGLKQAPRAWYKRLTIYLGD 469

Query: 61  KGYFRGGAYKTLFINKSKIDMIVAQIYVDDIIFGGFPKKLFNNFIDIMQSEFEMSIIGEL 120
           KGY R G  KTLFIN++  ++I+AQIYVDDIIFGGFPK    NFI+IM+SEFEMS++GEL
Sbjct: 470 KGYSRSGTSKTLFINRTSSELIIAQIYVDDIIFGGFPKAFIGNFINIMKSEFEMSMVGEL 529

Query: 121 SCFLG-------IFISHKKYAKNIVKKFELDKSQQKRTPAVTHVKITKDSDGDIVDNKLY 180
           SCFLG       IFIS +KY KN+VKKF LD+ Q KRT   THVK+TKD +G +VD+KLY
Sbjct: 530 SCFLGLQIKQRSIFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDINGTVVDHKLY 589

Query: 181 RSMIGSLLYLTTSRRDVAYIVGVCARIQSNPRVSHLVAIKRIIKYVNGTSDFGVLYFYNM 240
           RS++GSLLYL  S+ D+AY VG+CAR QS+PR SHL  +KRI+KYV+GTSDFG+LY ++ 
Sbjct: 590 RSLVGSLLYLMASKLDIAYAVGICARFQSDPRTSHLTVVKRILKYVHGTSDFGILYSFDT 649

Query: 241 NSILVDYYDADWAGCLEVRKSTSKGCFFLGNNMIFWFNKKKICVSLSTTEAK 286
            S LV Y DADWAG  + RKSTS GCFF+GNN+I WF+KK+ CVSLST EA+
Sbjct: 650 TSTLVGYCDADWAGSPDDRKSTSGGCFFVGNNLISWFSKKQNCVSLSTAEAR 701

[Close]
BLAST of Cmc01g0012671 vs. NCBI nr
Match: MCH79363.1 (gag-pol polyprotein [Trifolium medium])

HSP 1 Score: 400.2 bits (1027), Expect = 1.6e-107
Identity = 191/309 (61.81%), Postives = 238/309 (77.02%), Query Frame = 0 

Query: 1    MDVKSAFLNGYLNEEVYVAQPNGFIDLVYPQYVCKFNKALYGLMQAPRAWYERVTIYLSH 60
            MDVKSAFLNGYL+EEVYV QP GFID  YP +V K  KALYGL QAPRAWYER+TI+L  
Sbjct: 899  MDVKSAFLNGYLHEEVYVEQPKGFIDPSYPDHVYKLKKALYGLKQAPRAWYERLTIFLVS 958

Query: 61   KGYFRGGAYKTLFINKSKIDMIVAQIYVDDIIFGGFPKKLFNNFIDIMQSEFEMSIIGEL 120
            +GY +GG  KTLF+ +   ++++AQIYVDDI+FGG   ++  +F+  MQSEFEMS++GEL
Sbjct: 959  QGYRKGGNDKTLFVKEKNGNLMIAQIYVDDIVFGGMSNEMVQHFVQQMQSEFEMSLVGEL 1018

Query: 121  SCFLG---------IFISHKKYAKNIVKKFELDKSQQKRTPAVTHVKITKDSDGDIVDNK 180
            + FLG         IF+S  KYAKNIVKKF ++ +  KRTPA TH+K+T+D  G  VD  
Sbjct: 1019 TYFLGLQVKQMEDTIFVSQSKYAKNIVKKFGMESAAYKRTPAATHLKLTRDEKGVNVDQS 1078

Query: 181  LYRSMIGSLLYLTTSRRDVAYIVGVCARIQSNPRVSHLVAIKRIIKYVNGTSDFGVLYFY 240
            +Y+SMIGSLLYLT SR D+ + VGVCAR Q+ P++SHL+ +KRI+KY+NGTSD+G+LY  
Sbjct: 1079 MYKSMIGSLLYLTASRPDITFAVGVCARYQAEPKMSHLIQVKRILKYINGTSDYGILYSQ 1138

Query: 241  NMNSILVDYYDADWAGCLEVRKSTSKGCFFLGNNMIFWFNKKKICVSLSTTEAKYIAVGS 300
              NS LV Y DADWAG  + RKSTS GCFFLGNN+I WF+KK+ CVSLST EA+YIA GS
Sbjct: 1139 TKNSNLVGYCDADWAGSADDRKSTSGGCFFLGNNLISWFSKKQNCVSLSTAEAEYIAAGS 1198

[Close]
BLAST of Cmc01g0012671 vs. NCBI nr
Match: AAO73521.1 (gag-pol polyprotein [Glycine max])

HSP 1 Score: 399.4 bits (1025), Expect = 2.7e-107
Identity = 189/309 (61.17%), Postives = 238/309 (77.02%), Query Frame = 0 

Query: 1    MDVKSAFLNGYLNEEVYVAQPNGFIDLVYPQYVCKFNKALYGLMQAPRAWYERVTIYLSH 60
            MDVKSAFLNGYLNEEVYV QP GF D  +P +V +  KALYGL QAPRAWYER+T +L+ 
Sbjct: 1173 MDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQ 1232

Query: 61   KGYFRGGAYKTLFINKSKIDMIVAQIYVDDIIFGGFPKKLFNNFIDIMQSEFEMSIIGEL 120
            +GY +GG  KTLF+ +   ++++AQIYVDDI+FGG   ++  +F+  MQSEFEMS++GEL
Sbjct: 1233 QGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGEL 1292

Query: 121  SCFLG---------IFISHKKYAKNIVKKFELDKSQQKRTPAVTHVKITKDSDGDIVDNK 180
            + FLG         IF+S  +YAKNIVKKF ++ +  KRTPA TH+K++KD  G  VD  
Sbjct: 1293 TYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQS 1352

Query: 181  LYRSMIGSLLYLTTSRRDVAYIVGVCARIQSNPRVSHLVAIKRIIKYVNGTSDFGVLYFY 240
            LYRSMIGSLLYLT SR D+ Y VGVCAR Q+NP++SHL  +KRI+KYVNGTSD+G++Y +
Sbjct: 1353 LYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGIMYCH 1412

Query: 241  NMNSILVDYYDADWAGCLEVRKSTSKGCFFLGNNMIFWFNKKKICVSLSTTEAKYIAVGS 300
              N +LV Y DADWAG  + RKSTS GCF+LGNN+I WF+KK+ CVSLST EA+YIA GS
Sbjct: 1413 CSNPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGS 1472

[Close]
BLAST of Cmc01g0012671 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 3.2e-47
Identity = 107/308 (34.74%), Postives = 168/308 (54.55%), Query Frame = 0 

Query: 1    MDVKSAFLNGYLNEEVYVAQPNGFIDLVYPQYVCKFNKALYGLMQAPRAWYERVTIYLSH 60
            +DV +AFL G L ++VY++QP GFID   P YVCK  KALYGL QAPRAWY  +  YL  
Sbjct: 1064 LDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLT 1123

Query: 61   KGYFRGGAYKTLFINKSKIDMIVAQIYVDDIIFGGFPKKLFNNFIDIMQSEFEMSIIGEL 120
             G+    +  +LF+ +    ++   +YVDDI+  G    L +N +D +   F +    EL
Sbjct: 1124 IGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEEL 1183

Query: 121  SCFLGI---------FISHKKYAKNIVKKFELDKSQQKRTPAVTHVKITKDSDGDIVDNK 180
              FLGI          +S ++Y  +++ +  +  ++   TP     K++  S   + D  
Sbjct: 1184 HYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPT 1243

Query: 181  LYRSMIGSLLYLTTSRRDVAYIVGVCARIQSNPRVSHLVAIKRIIKYVNGTSDFGVLYFY 240
             YR ++GSL YL  +R D++Y V   ++    P   HL A+KRI++Y+ GT + G+    
Sbjct: 1244 EYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKK 1303

Query: 241  NMNSILVDYYDADWAGCLEVRKSTSKGCFFLGNNMIFWFNKKKICVSLSTTEAKYIAVGS 300
                 L  Y DADWAG  +   ST+    +LG++ I W +KK+  V  S+TEA+Y +V +
Sbjct: 1304 GNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVAN 1363

[Close]
BLAST of Cmc01g0012671 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 5.5e-47
Identity = 106/308 (34.42%), Postives = 167/308 (54.22%), Query Frame = 0 

Query: 1    MDVKSAFLNGYLNEEVYVAQPNGFIDLVYPQYVCKFNKALYGLMQAPRAWYERVTIYLSH 60
            +DV +AFL G L +EVY++QP GF+D   P YVC+  KA+YGL QAPRAWY  +  YL  
Sbjct: 1047 LDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLT 1106

Query: 61   KGYFRGGAYKTLFINKSKIDMIVAQIYVDDIIFGGFPKKLFNNFIDIMQSEFEMSIIGEL 120
             G+    +  +LF+ +    +I   +YVDDI+  G    L  + +D +   F +    +L
Sbjct: 1107 VGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDL 1166

Query: 121  SCFLGI---------FISHKKYAKNIVKKFELDKSQQKRTPAVTHVKITKDSDGDIVDNK 180
              FLGI          +S ++Y  +++ +  +  ++   TP  T  K+T  S   + D  
Sbjct: 1167 HYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPT 1226

Query: 181  LYRSMIGSLLYLTTSRRDVAYIVGVCARIQSNPRVSHLVAIKRIIKYVNGTSDFGVLYFY 240
             YR ++GSL YL  +R D++Y V   ++    P   H  A+KR+++Y+ GT D G+    
Sbjct: 1227 EYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKK 1286

Query: 241  NMNSILVDYYDADWAGCLEVRKSTSKGCFFLGNNMIFWFNKKKICVSLSTTEAKYIAVGS 300
                 L  Y DADWAG  +   ST+    +LG++ I W +KK+  V  S+TEA+Y +V +
Sbjct: 1287 GNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVAN 1346

[Close]
BLAST of Cmc01g0012671 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 2.3e-45
Identity = 108/319 (33.86%), Postives = 173/319 (54.23%), Query Frame = 0 

Query: 1    MDVKSAFLNGYLNEEVYVAQPNGFIDLVYPQYVCKFNKALYGLMQAPRAWYERVTIYLSH 60
            +DVK+AFL+G L EE+Y+ QP GF        VCK NK+LYGL QAPR WY +   ++  
Sbjct: 921  LDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKS 980

Query: 61   KGYFRGGAYKTLFINK-SKIDMIVAQIYVDDIIFGGFPKKLFNNFIDIMQSEFEMSIIGE 120
            + Y +  +   ++  + S+ + I+  +YVDD++  G  K L       +   F+M  +G 
Sbjct: 981  QTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGP 1040

Query: 121  LSCFLG-----------IFISHKKYAKNIVKKFELDKSQQKRTPAVTHVKITKDSDGDIV 180
                LG           +++S +KY + ++++F +  ++   TP   H+K++K      V
Sbjct: 1041 AQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTV 1100

Query: 181  DNK------LYRSMIGSLLY-LTTSRRDVAYIVGVCARIQSNPRVSHLVAIKRIIKYVNG 240
            + K       Y S +GSL+Y +  +R D+A+ VGV +R   NP   H  A+K I++Y+ G
Sbjct: 1101 EEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRG 1160

Query: 241  TSDFGVLYFYNMNSILVDYYDADWAGCLEVRKSTSKGCFFLGNNMIFWFNKKKICVSLST 300
            T+    L F   + IL  Y DAD AG ++ RKS++   F      I W +K + CV+LST
Sbjct: 1161 TTG-DCLCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALST 1220

[Close]
BLAST of Cmc01g0012671 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 155.2 bits (391), Expect = 1.1e-36
Identity = 101/316 (31.96%), Postives = 163/316 (51.58%), Query Frame = 0 

Query: 1    MDVKSAFLNGYLNEEVYVAQPNGFIDLVYPQYVCKFNKALYGLMQAPRAWYERVTIYLSH 60
            MDVK+AFLNG L EE+Y+  P G         VCK NKA+YGL QA R W+E     L  
Sbjct: 1001 MDVKTAFLNGTLKEEIYMRLPQGI--SCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKE 1060

Query: 61   KGYFRGGAYKTLFI-NKSKI-DMIVAQIYVDDIIFGGFPKKLFNNFIDIMQSEFEMSIIG 120
              +      + ++I +K  I + I   +YVDD++         NNF   +  +F M+ + 
Sbjct: 1061 CEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLN 1120

Query: 121  ELSCFLG---------IFISHKKYAKNIVKKFELDKSQQKRTPAVTHVKI-TKDSDGDIV 180
            E+  F+G         I++S   Y K I+ KF ++      TP  + +     +SD D  
Sbjct: 1121 EIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDC- 1180

Query: 181  DNKLYRSMIGSLLY-LTTSRRDVAYIVGVCARIQSNPRVSHLVAIKRIIKYVNGTSDFGV 240
             N   RS+IG L+Y +  +R D+   V + +R  S         +KR+++Y+ GT D  +
Sbjct: 1181 -NTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKL 1240

Query: 241  LYFYNM--NSILVDYYDADWAGCLEVRKSTSKGCFFLGN-NMIFWFNKKKICVSLSTTEA 300
            ++  N+   + ++ Y D+DWAG    RKST+   F + + N+I W  K++  V+ S+TEA
Sbjct: 1241 IFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEA 1300

[Close]
BLAST of Cmc01g0012671 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 127.1 bits (318), Expect = 3.3e-28
Identity = 82/299 (27.42%), Postives = 139/299 (46.49%), Query Frame = 0 

Query: 1   MDVKSAFLNGYLNEEVYVAQPNGFIDLVYPQYVCKFNKALYGLMQAPRAWYERVTIYLSH 60
           MDV +AFLN  ++E +YV QP GF++   P YV +    +YGL QAP  W E +   L  
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 61  KGYFRGGAYKTLFINKSKIDMIVAQIYVDDIIFGGFPKKLFNNFIDIMQSEFEMSIIGEL 120
            G+ R      L+   +    I   +YVDD++      K+++     +   + M  +G++
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 121 SCFLG----------IFISHKKYAKNIVKKFELDKSQQKRTPAVTHVKITKDSDGDIVDN 180
             FLG          I +S + Y      + E++  +  +TP      + + +   + D 
Sbjct: 121 DKFLGLNIHQSSNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDI 180

Query: 181 KLYRSMIGSLLY-LTTSRRDVAYIVGVCARIQSNPRVSHLVAIKRIIKYVNGTSDFGVLY 240
             Y+S++G LL+   T R D++Y V + +R    PR  HL + +R+++Y+  T    + Y
Sbjct: 181 TPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKY 240

Query: 241 FYNMNSILVDYYDADWAGCLEVRKSTSKGCFFLGNNMIFWFNKK-KICVSLSTTEAKYI 288
                  L  Y DA      ++  ST      L    + W +KK K  + + +TEA+YI
Sbjct: 241 RSGSQLALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEYI 299

[Close]
BLAST of Cmc01g0012671 vs. ExPASy TrEMBL
Match: A0A5D3DI97 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G002180 PE=4 SV=1)

HSP 1 Score: 429.1 bits (1102), Expect = 1.5e-116
Identity = 205/309 (66.34%), Postives = 250/309 (80.91%), Query Frame = 0 

Query: 1   MDVKSAFLNGYLNEEVYVAQPNGFIDLVYPQYVCKFNKALYGLMQAPRAWYERVTIYLSH 60
           MDVKSAFLNGYLNEEVYVAQP  F+D  +P++V K NKALYGL QAPR WYER+T+YL  
Sbjct: 1   MDVKSAFLNGYLNEEVYVAQPKDFVDSEHPKHVYKLNKALYGLKQAPRVWYERLTVYLRG 60

Query: 61  KGYFRGGAYKTLFINKSKIDMIVAQIYVDDIIFGGFPKKLFNNFIDIMQSEFEMSIIGEL 120
           KGY RG   KTLFI++    ++VAQIYVDDIIFGGFP  L NNFI+IMQSEFEMS++GEL
Sbjct: 61  KGYSRGEIDKTLFIHRKSDQLLVAQIYVDDIIFGGFPHDLVNNFINIMQSEFEMSMVGEL 120

Query: 121 SCFLG---------IFISHKKYAKNIVKKFELDKSQQKRTPAVTHVKITKDSDGDIVDNK 180
           SCFLG         I IS KKYAKN+ KKF L++++ KRTPA THVK+T+D+DG  VD+K
Sbjct: 121 SCFLGFQIKQKNDDIIISQKKYAKNMAKKFGLEQARNKRTPAATHVKLTRDNDGAEVDHK 180

Query: 181 LYRSMIGSLLYLTTSRRDVAYIVGVCARIQSNPRVSHLVAIKRIIKYVNGTSDFGVLYFY 240
           LYRS++ +LLYLT SR D+AY VG+CAR Q++PR+SHL A+KRI+KYV+GT+DFG++Y Y
Sbjct: 181 LYRSIVSNLLYLTASRPDIAYAVGICARYQADPRISHLEAVKRILKYVHGTNDFGMMYSY 240

Query: 241 NMNSILVDYYDADWAGCLEVRKSTSKGCFFLGNNMIFWFNKKKICVSLSTTEAKYIAVGS 300
           +    LV Y DADWAG  + RKSTS GCFFLGNN+I+W +KK+ CVSLSTTEA+YI  GS
Sbjct: 241 DTTPTLVGYCDADWAGLADDRKSTSGGCFFLGNNLIYWLSKKQNCVSLSTTEAEYIVAGS 300

[Close]
BLAST of Cmc01g0012671 vs. ExPASy TrEMBL
Match: A0A5A7UF87 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004260 PE=4 SV=1)

HSP 1 Score: 421.0 bits (1081), Expect = 4.1e-114
Identity = 208/309 (67.31%), Postives = 243/309 (78.64%), Query Frame = 0 

Query: 1   MDVKSAFLNGYLNEEVYVAQPNGFIDLVYPQYVCKFNKALYGLMQAPRAWYERVTIYLSH 60
           MDVKSAFLNGYLNEEVYVAQP  FID  +P  + K NKALYGL QAP  WYE++T+YL  
Sbjct: 507 MDVKSAFLNGYLNEEVYVAQPKRFIDSEFPHKLYKLNKALYGLKQAPLTWYEQLTMYLGE 566

Query: 61  KGYFRGGAYKTLFINKSKIDMIVAQIYVDDIIFGGFPKKLFNNFIDIMQSEFEMSIIGEL 120
           +GY RG   KTL IN++  D+IVAQIYVDDIIFGGFPK L NNFI+IM SEFEMS++GEL
Sbjct: 567 RGYSRGETDKTLLINRTSTDLIVAQIYVDDIIFGGFPKTLVNNFINIMTSEFEMSLVGEL 626

Query: 121 SCFLGI---------FISHKKYAKNIVKKFELDKSQQKRTPAVTHVKITKDSDGDIVDNK 180
           SCFLG+         F+S +KYAKN+VKKF LD+SQ KRTPA TH KITKD+ G  VD+K
Sbjct: 627 SCFLGLQIKQRSEGMFMSQEKYAKNLVKKFGLDQSQYKRTPAATHAKITKDTVGTAVDHK 686

Query: 181 LYRSMIGSLLYLTTSRRDVAYIVGVCARIQSNPRVSHLVAIKRIIKYVNGTSDFGVLYFY 240
           LYRSMIGS LYL  SR D+AY V +CAR QS+P  SHL A+KRIIKYV+GT+DFG+LY Y
Sbjct: 687 LYRSMIGSHLYLKASRPDIAYAVEICARYQSDPCTSHLNAVKRIIKYVHGTTDFGILYSY 746

Query: 241 NMNSILVDYYDADWAGCLEVRKSTSKGCFFLGNNMIFWFNKKKICVSLSTTEAKYIAVGS 300
           +  S LV Y DADWAG  + RKSTS GCFFLGNN++ WF+KK+ CVSLSTTE +YI  GS
Sbjct: 747 DTFSKLVGYCDADWAGSADDRKSTSGGCFFLGNNLVSWFSKKQNCVSLSTTEVEYITAGS 806

[Close]
BLAST of Cmc01g0012671 vs. ExPASy TrEMBL
Match: A0A5D3E1T0 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G00520 PE=4 SV=1)

HSP 1 Score: 411.0 bits (1055), Expect = 4.3e-111
Identity = 196/292 (67.12%), Postives = 236/292 (80.82%), Query Frame = 0 

Query: 1   MDVKSAFLNGYLNEEVYVAQPNGFIDLVYPQYVCKFNKALYGLMQAPRAWYERVTIYLSH 60
           MDVKSAFLNGYLNEEV+VAQP GF+D  +PQ+V K NKALYGL QAPRAWY+R+TIYL  
Sbjct: 410 MDVKSAFLNGYLNEEVFVAQPKGFVDSEFPQHVYKLNKALYGLKQAPRAWYKRLTIYLGD 469

Query: 61  KGYFRGGAYKTLFINKSKIDMIVAQIYVDDIIFGGFPKKLFNNFIDIMQSEFEMSIIGEL 120
           KGY R G  KTLFIN++  ++I+AQIYVDDIIFGGFPK    NFI+IM+SEFEMS++GEL
Sbjct: 470 KGYSRSGTSKTLFINRTSSELIIAQIYVDDIIFGGFPKAFIGNFINIMKSEFEMSMVGEL 529

Query: 121 SCFLG-------IFISHKKYAKNIVKKFELDKSQQKRTPAVTHVKITKDSDGDIVDNKLY 180
           SCFLG       IFIS +KY KN+VKKF LD+ Q KRT   THVK+TKD +G +VD+KLY
Sbjct: 530 SCFLGLQIKQRSIFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDINGTVVDHKLY 589

Query: 181 RSMIGSLLYLTTSRRDVAYIVGVCARIQSNPRVSHLVAIKRIIKYVNGTSDFGVLYFYNM 240
           RS++GSLLYL  S+ D+AY VG+CAR QS+PR SHL  +KRI+KYV+GTSDFG+LY ++ 
Sbjct: 590 RSLVGSLLYLMASKLDIAYAVGICARFQSDPRTSHLTVVKRILKYVHGTSDFGILYSFDT 649

Query: 241 NSILVDYYDADWAGCLEVRKSTSKGCFFLGNNMIFWFNKKKICVSLSTTEAK 286
            S LV Y DADWAG  + RKSTS GCFF+GNN+I WF+KK+ CVSLST EA+
Sbjct: 650 TSTLVGYCDADWAGSPDDRKSTSGGCFFVGNNLISWFSKKQNCVSLSTAEAR 701

[Close]
BLAST of Cmc01g0012671 vs. ExPASy TrEMBL
Match: A0A392LWM0 (Gag-pol polyprotein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0000112 PE=4 SV=1)

HSP 1 Score: 400.2 bits (1027), Expect = 7.6e-108
Identity = 191/309 (61.81%), Postives = 238/309 (77.02%), Query Frame = 0 

Query: 1    MDVKSAFLNGYLNEEVYVAQPNGFIDLVYPQYVCKFNKALYGLMQAPRAWYERVTIYLSH 60
            MDVKSAFLNGYL+EEVYV QP GFID  YP +V K  KALYGL QAPRAWYER+TI+L  
Sbjct: 899  MDVKSAFLNGYLHEEVYVEQPKGFIDPSYPDHVYKLKKALYGLKQAPRAWYERLTIFLVS 958

Query: 61   KGYFRGGAYKTLFINKSKIDMIVAQIYVDDIIFGGFPKKLFNNFIDIMQSEFEMSIIGEL 120
            +GY +GG  KTLF+ +   ++++AQIYVDDI+FGG   ++  +F+  MQSEFEMS++GEL
Sbjct: 959  QGYRKGGNDKTLFVKEKNGNLMIAQIYVDDIVFGGMSNEMVQHFVQQMQSEFEMSLVGEL 1018

Query: 121  SCFLG---------IFISHKKYAKNIVKKFELDKSQQKRTPAVTHVKITKDSDGDIVDNK 180
            + FLG         IF+S  KYAKNIVKKF ++ +  KRTPA TH+K+T+D  G  VD  
Sbjct: 1019 TYFLGLQVKQMEDTIFVSQSKYAKNIVKKFGMESAAYKRTPAATHLKLTRDEKGVNVDQS 1078

Query: 181  LYRSMIGSLLYLTTSRRDVAYIVGVCARIQSNPRVSHLVAIKRIIKYVNGTSDFGVLYFY 240
            +Y+SMIGSLLYLT SR D+ + VGVCAR Q+ P++SHL+ +KRI+KY+NGTSD+G+LY  
Sbjct: 1079 MYKSMIGSLLYLTASRPDITFAVGVCARYQAEPKMSHLIQVKRILKYINGTSDYGILYSQ 1138

Query: 241  NMNSILVDYYDADWAGCLEVRKSTSKGCFFLGNNMIFWFNKKKICVSLSTTEAKYIAVGS 300
              NS LV Y DADWAG  + RKSTS GCFFLGNN+I WF+KK+ CVSLST EA+YIA GS
Sbjct: 1139 TKNSNLVGYCDADWAGSADDRKSTSGGCFFLGNNLISWFSKKQNCVSLSTAEAEYIAAGS 1198

[Close]
BLAST of Cmc01g0012671 vs. ExPASy TrEMBL
Match: Q84VI4 (Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 1.3e-107
Identity = 189/309 (61.17%), Postives = 238/309 (77.02%), Query Frame = 0 

Query: 1    MDVKSAFLNGYLNEEVYVAQPNGFIDLVYPQYVCKFNKALYGLMQAPRAWYERVTIYLSH 60
            MDVKSAFLNGYLNEEVYV QP GF D  +P +V +  KALYGL QAPRAWYER+T +L+ 
Sbjct: 1173 MDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQ 1232

Query: 61   KGYFRGGAYKTLFINKSKIDMIVAQIYVDDIIFGGFPKKLFNNFIDIMQSEFEMSIIGEL 120
            +GY +GG  KTLF+ +   ++++AQIYVDDI+FGG   ++  +F+  MQSEFEMS++GEL
Sbjct: 1233 QGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGEL 1292

Query: 121  SCFLG---------IFISHKKYAKNIVKKFELDKSQQKRTPAVTHVKITKDSDGDIVDNK 180
            + FLG         IF+S  +YAKNIVKKF ++ +  KRTPA TH+K++KD  G  VD  
Sbjct: 1293 TYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQS 1352

Query: 181  LYRSMIGSLLYLTTSRRDVAYIVGVCARIQSNPRVSHLVAIKRIIKYVNGTSDFGVLYFY 240
            LYRSMIGSLLYLT SR D+ Y VGVCAR Q+NP++SHL  +KRI+KYVNGTSD+G++Y +
Sbjct: 1353 LYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGIMYCH 1412

Query: 241  NMNSILVDYYDADWAGCLEVRKSTSKGCFFLGNNMIFWFNKKKICVSLSTTEAKYIAVGS 300
              N +LV Y DADWAG  + RKSTS GCF+LGNN+I WF+KK+ CVSLST EA+YIA GS
Sbjct: 1413 CSNPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGS 1472

[Close]
BLAST of Cmc01g0012671 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 173.3 bits (438), Expect = 2.9e-43
Identity = 99/312 (31.73%), Postives = 163/312 (52.24%), Query Frame = 0 

Query: 1   MDVKSAFLNGYLNEEVYVAQPNGFI----DLVYPQYVCKFNKALYGLMQAPRAWYERVTI 60
           +D+ +AFLNG L+EE+Y+  P G+     D + P  VC   K++YGL QA R W+ + ++
Sbjct: 193 LDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSV 252

Query: 61  YLSHKGYFRGGAYKTLFINKSKIDMIVAQIYVDDIIFGGFPKKLFNNFIDIMQSEFEMSI 120
            L   G+ +  +  T F+  +    +   +YVDDII         +     ++S F++  
Sbjct: 253 TLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRD 312

Query: 121 IGELSCFL---------GIFISHKKYAKNIVKKFELDKSQQKRTPAVTHVKITKDSDGDI 180
           +G L  FL         GI I  +KYA +++ +  L   +    P    V  +  S GD 
Sbjct: 313 LGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDF 372

Query: 181 VDNKLYRSMIGSLLYLTTSRRDVAYIVGVCARIQSNPRVSHLVAIKRIIKYVNGTSDFGV 240
           VD K YR +IG L+YL  +R D+++ V   ++    PR++H  A+ +I+ Y+ GT   G+
Sbjct: 373 VDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGL 432

Query: 241 LYFYNMNSILVDYYDADWAGCLEVRKSTSKGCFFLGNNMIFWFNKKKICVSLSTTEAKYI 300
            Y       L  + DA +  C + R+ST+  C FLG ++I W +KK+  VS S+ EA+Y 
Sbjct: 433 FYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYR 492

[Close]
BLAST of Cmc01g0012671 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 123.2 bits (308), Expect = 3.4e-28
Identity = 73/222 (32.88%), Postives = 113/222 (50.90%), Query Frame = 0 

Query: 86  IYVDDIIFGGFPKKLFNNFIDIMQSEFEMSIIGELSCFLGI---------FISHKKYAKN 145
           +YVDDI+  G    L N  I  + S F M  +G +  FLGI         F+S  KYA+ 
Sbjct: 5   LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 146 IVKKFELDKSQQKRTPAVTHVKITKDSDGDIVDNKLYRSMIGSLLYLTTSRRDVAYIVGV 205
           I+    +   +   TP    +  +  S     D   +RS++G+L YLT +R D++Y V +
Sbjct: 65  ILNNAGMLDCKPMSTPLPLKLN-SSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNI 124

Query: 206 CARIQSNPRVSHLVAIKRIIKYVNGTSDFGVLYFYNMNSILVDYYDADWAGCLEVRKSTS 265
             +    P ++    +KR+++YV GT   G+    N    +  + D+DWAGC   R+ST+
Sbjct: 125 VCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTT 184

Query: 266 KGCFFLGNNMIFWFNKKKICVSLSTTEAKYIAVGSGCTQLMW 299
             C FLG N+I W  K++  VS S+TE +Y A+     +L W
Sbjct: 185 GFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]
BLAST of Cmc01g0012671 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 53.1 bits (126), Expect = 4.4e-07
Identity = 27/88 (30.68%), Postives = 47/88 (53.41%), Query Frame = 0 

Query: 181 LYLTTSRRDVAYIVGVCARIQSNPRVSHLVAIKRIIKYVNGTSDFGVLYFYNMNSILVDY 240
           +YLT +R D+ + V   ++  S  R + + A+ +++ YV GT   G+ Y    +  L  +
Sbjct: 1   MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60

Query: 241 YDADWAGCLEVRKSTSKGC-----FFLG 264
            D+DWA C + R+S +  C     +FLG
Sbjct: 61  ADSDWASCPDTRRSVTGFCSLVPLWFLG 88

The following BLAST results are available for this feature:
BLAST of Cmc01g0012671 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK23188.13.1e-11666.34gag-pol polyprotein [Cucumis melo var. makuwa][more]
KAA0054623.18.6e-11467.31putative mitochondrial protein [Cucumis melo var. makuwa][more]
TYK29824.18.9e-11167.12putative gag-pol polyprotein [Cucumis melo var. makuwa][more]
MCH79363.11.6e-10761.81gag-pol polyprotein [Trifolium medium][more]
AAO73521.12.7e-10761.17gag-pol polyprotein [Glycine max][more]
BLAST of Cmc01g0012671 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q94HW23.2e-4734.74Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT945.5e-4734.42Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P109782.3e-4533.86Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P041461.1e-3631.96Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
P256003.3e-2827.42Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT... [more]
BLAST of Cmc01g0012671 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DI971.5e-11666.34Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G... [more]
A0A5A7UF874.1e-11467.31Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A5D3E1T04.3e-11167.12Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A392LWM07.6e-10861.81Gag-pol polyprotein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0000112 PE=... [more]
Q84VI41.3e-10761.17Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1[more]
BLAST of Cmc01g0012671 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G23160.12.9e-4331.73cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00810.13.4e-2832.88DNA/RNA polymerases superfamily protein [more]
ATMG00240.14.4e-0730.68Gag-Pol-related retrotransposon family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..153
e-value: 6.1E-32
score: 111.2
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..181
NoneNo IPR availablePANTHERPTHR11439:SF351CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8coord: 1..181
NoneNo IPR availableCDDcd09272RNase_HI_RT_Ty1coord: 240..300
e-value: 1.34851E-22
score: 89.0645
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 1..276

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc01g0012671.1Cmc01g0012671.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding