Cmc01g0012431 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0012431
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr01: 8630993 .. 8631442 (-)
RNA-Seq Expression	Cmc01g0012431
Synteny	Cmc01g0012431

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCCAATTGAGCTAAAGGAACTGAAGGTCCAGTTGCAGAAGTTACTGGACAAGGGCTTTATACGACCTAGCGTGTCACCTTGGGGAGCACCAGTATTGTTCGTGAATAAAAAAGATGGATCGATGCATTTTTGCATTGATTACAGAGAGTTAAATAAGGTGACAGTCAAGAACCGCTATCCATTGCCCAAGATTGATGACTTGTTTGACCAACTGCAAAGAGCCACTATTTTCTCTAAGATCGATTTACGTTCAAGCTATCACCAGCTCAGGATTAGAGATAGTGATATACCTAAGACTTATTTTCGTTCCAAATACAGGCATTATGAGTTTATTGTAATGTCTTTTGGCTTGACCAATGCTCCTGCGGTATTTATGGATCTGATGAACAGGGTGTTTACGGACTTCTTGGACACTTTCGTTATAGTTTTTATTGATGATATCTAG

mRNA sequence

ATGGCCCCAATTGAGCTAAAGGAACTGAAGGTCCAGTTGCAGAAGTTACTGGACAAGGGCTTTATACGACCTAGCGTGTCACCTTGGGGAGCACCAGTATTGTTCGTGAATAAAAAAGATGGATCGATGCATTTTTGCATTGATTACAGAGAGTTAAATAAGGTGACAGTCAAGAACCGCTATCCATTGCCCAAGATTGATGACTTGTTTGACCAACTGCAAAGAGCCACTATTTTCTCTAAGATCGATTTACGTTCAAGCTATCACCAGCTCAGGATTAGAGATAGTGATATACCTAAGACTTATTTTCGTTCCAAATACAGGCATTATGAGTTTATTGTAATGTCTTTTGGCTTGACCAATGCTCCTGCGGTATTTATGGATCTGATGAACAGGGTGTTTACGGACTTCTTGGACACTTTCGTTATAGTTTTTATTGATGATATCTAG

Coding sequence (CDS)

ATGGCCCCAATTGAGCTAAAGGAACTGAAGGTCCAGTTGCAGAAGTTACTGGACAAGGGCTTTATACGACCTAGCGTGTCACCTTGGGGAGCACCAGTATTGTTCGTGAATAAAAAAGATGGATCGATGCATTTTTGCATTGATTACAGAGAGTTAAATAAGGTGACAGTCAAGAACCGCTATCCATTGCCCAAGATTGATGACTTGTTTGACCAACTGCAAAGAGCCACTATTTTCTCTAAGATCGATTTACGTTCAAGCTATCACCAGCTCAGGATTAGAGATAGTGATATACCTAAGACTTATTTTCGTTCCAAATACAGGCATTATGAGTTTATTGTAATGTCTTTTGGCTTGACCAATGCTCCTGCGGTATTTATGGATCTGATGAACAGGGTGTTTACGGACTTCTTGGACACTTTCGTTATAGTTTTTATTGATGATATCTAG

Protein sequence

MAPIELKELKVQLQKLLDKGFIRPSVSPWGAPVLFVNKKDGSMHFCIDYRELNKVTVKNRYPLPKIDDLFDQLQRATIFSKIDLRSSYHQLRIRDSDIPKTYFRSKYRHYEFIVMSFGLTNAPAVFMDLMNRVFTDFLDTFVIVFIDDI

Homology

[Close]

BLAST of Cmc01g0012431 vs. NCBI nr
Match: KAA0056047.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 275.8 bits (704), Expect = 2.2e-70
Identity = 135/149 (90.60%), Postives = 141/149 (94.63%), Query Frame = 0


Query: 1   MAPIELKELKVQLQKLLDKGFIRPSVSPWGAPVLFVNKKDGSMHFCIDYRELNKVTVKNR 60
           MAP+ELKELKVQLQ+LLDKGFIRPSVSPWGAPVLFV KKDGSM  CIDYRELNKVTVKNR
Sbjct: 486 MAPVELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 545

Query: 61  YPLPKIDDLFDQLQRATIFSKIDLRSSYHQLRIRDSDIPKTYFRSKYRHYEFIVMSFGLT 120
           YPLPKIDDLFDQLQ AT+FSKIDL+S YHQLRIRDSDIPKT FRS+Y HYEFIVMSFGLT
Sbjct: 546 YPLPKIDDLFDQLQGATVFSKIDLQSGYHQLRIRDSDIPKTAFRSRYEHYEFIVMSFGLT 605

Query: 121 NAPAVFMDLMNRVFTDFLDTFVIVFIDDI 150
           NAPAVFMDLMNRVF DFLD+FVIVFIDDI
Sbjct: 606 NAPAVFMDLMNRVFKDFLDSFVIVFIDDI 634

[Close]

BLAST of Cmc01g0012431 vs. NCBI nr
Match: KAA0050011.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 274.6 bits (701), Expect = 4.9e-70
Identity = 135/149 (90.60%), Postives = 140/149 (93.96%), Query Frame = 0


Query: 1   MAPIELKELKVQLQKLLDKGFIRPSVSPWGAPVLFVNKKDGSMHFCIDYRELNKVTVKNR 60
           MAP ELKELKVQLQ+LLDKGFIRPSVSPWGAPVLFV KKDGSM  CIDY+ELNKVTVKNR
Sbjct: 317 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYKELNKVTVKNR 376

Query: 61  YPLPKIDDLFDQLQRATIFSKIDLRSSYHQLRIRDSDIPKTYFRSKYRHYEFIVMSFGLT 120
           YPLPKIDDLFDQLQ AT+FSKIDLRS YHQLRIRDSDIPKT FRS+Y HYEFIVMSFGLT
Sbjct: 377 YPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYEHYEFIVMSFGLT 436

Query: 121 NAPAVFMDLMNRVFTDFLDTFVIVFIDDI 150
           NAPAVFMDLMNRVF DFLD+FVIVFIDDI
Sbjct: 437 NAPAVFMDLMNRVFKDFLDSFVIVFIDDI 465

[Close]

BLAST of Cmc01g0012431 vs. NCBI nr
Match: TYJ98213.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 274.2 bits (700), Expect = 6.4e-70
Identity = 135/149 (90.60%), Postives = 139/149 (93.29%), Query Frame = 0


Query: 1   MAPIELKELKVQLQKLLDKGFIRPSVSPWGAPVLFVNKKDGSMHFCIDYRELNKVTVKNR 60
           MA  ELKELKVQLQ+LLDKGFIRPSVSPWGAPVLFV KKDGSM  CIDYRELNKVTVKNR
Sbjct: 327 MASAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 386

Query: 61  YPLPKIDDLFDQLQRATIFSKIDLRSSYHQLRIRDSDIPKTYFRSKYRHYEFIVMSFGLT 120
           YPLP+IDDLFDQLQRAT+FSKIDLRS YHQLRIRDSDIPKT FRS+Y HYEFIVMSFGLT
Sbjct: 387 YPLPRIDDLFDQLQRATVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYEHYEFIVMSFGLT 446

Query: 121 NAPAVFMDLMNRVFTDFLDTFVIVFIDDI 150
           NAP VFMDLMNRVF DFLDTFVIVFIDDI
Sbjct: 447 NAPTVFMDLMNRVFKDFLDTFVIVFIDDI 475

[Close]

BLAST of Cmc01g0012431 vs. NCBI nr
Match: TYK04315.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 273.9 bits (699), Expect = 8.4e-70
Identity = 132/149 (88.59%), Postives = 140/149 (93.96%), Query Frame = 0


Query: 1   MAPIELKELKVQLQKLLDKGFIRPSVSPWGAPVLFVNKKDGSMHFCIDYRELNKVTVKNR 60
           MAP+ELKELKVQLQ+LLDKGFIRPSVSPWGAPVLFV KKDGSMH CIDYRELNKVTVKNR
Sbjct: 681 MAPVELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMHLCIDYRELNKVTVKNR 740

Query: 61  YPLPKIDDLFDQLQRATIFSKIDLRSSYHQLRIRDSDIPKTYFRSKYRHYEFIVMSFGLT 120
           YPLP+IDDLFDQLQ AT+FSKIDLRS YHQLRI+D D+PKT FRS+Y HYEFIVMSFGLT
Sbjct: 741 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 800

Query: 121 NAPAVFMDLMNRVFTDFLDTFVIVFIDDI 150
           NAP VFMDLMNRVF +FLDTFVIVFIDDI
Sbjct: 801 NAPTVFMDLMNRVFREFLDTFVIVFIDDI 829

[Close]

BLAST of Cmc01g0012431 vs. NCBI nr
Match: KAA0060745.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 273.1 bits (697), Expect = 1.4e-69
Identity = 134/149 (89.93%), Postives = 139/149 (93.29%), Query Frame = 0


Query: 1   MAPIELKELKVQLQKLLDKGFIRPSVSPWGAPVLFVNKKDGSMHFCIDYRELNKVTVKNR 60
           MAP ELKELKVQLQ+LLDKGFIRPSVSPWGAPVLFV KKDGSM  CIDYRELNKVTVKNR
Sbjct: 571 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 630

Query: 61  YPLPKIDDLFDQLQRATIFSKIDLRSSYHQLRIRDSDIPKTYFRSKYRHYEFIVMSFGLT 120
           YPLPKIDDLFDQLQ AT+FSKIDLRS YHQLRIRD DIPKT FRS+Y HYEF+VMSFGLT
Sbjct: 631 YPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 690

Query: 121 NAPAVFMDLMNRVFTDFLDTFVIVFIDDI 150
           NAPAVFMDLMNRVF DFLD+FVIVFIDDI
Sbjct: 691 NAPAVFMDLMNRVFKDFLDSFVIVFIDDI 719

[Close]

BLAST of Cmc01g0012431 vs. ExPASy Swiss-Prot
Match: P31843 (RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.4e-29
Identity = 61/108 (56.48%), Postives = 82/108 (75.93%), Query Frame = 0


Query: 42  SMHFCIDYRELNKVTVKNRYPLPKIDDLFDQLQRATIFSKIDLRSSYHQLRIRDSDIPKT 101
           S+  CIDYR L KVT+KN+YP+P++DDLFD+L +AT F+K+DLRS Y Q+RI   D PKT
Sbjct: 5   SLRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKT 64

Query: 102 YFRSKYRHYEFIVMSFGLTNAPAVFMDLMNRVFTDFLDTFVIVFIDDI 150
              ++Y  +EF VM FGLTNA A F +LMN V  ++LD FV+V++DD+
Sbjct: 65  TCVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDL 112

[Close]

BLAST of Cmc01g0012431 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 127.1 bits (318), Expect = 1.7e-28
Identity = 66/143 (46.15%), Postives = 89/143 (62.24%), Query Frame = 0


Query: 7   KELKVQLQKLLDKGFIRPSVSPWGAPVLFVNKKDGSMHFCIDYRELNKVTVKNRYPLPKI 66
           +E+   +QKLLD  FI PS SP  +PV+ V KKDG+   C+DYR LNK T+ + +PLP+I
Sbjct: 610 QEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRI 669

Query: 67  DDLFDQLQRATIFSKIDLRSSYHQLRIRDSDIPKTYFRSKYRHYEFIVMSFGLTNAPAVF 126
           D+L  ++  A IF+ +DL S YHQ+ +   D  KT F +    YE+ VM FGL NAP+ F
Sbjct: 670 DNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTF 729

Query: 127 MDLMNRVFTDFLDTFVIVFIDDI 150
              M   F D    FV V++DDI
Sbjct: 730 ARYMADTFRDL--RFVNVYLDDI 750

[Close]

BLAST of Cmc01g0012431 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 127.1 bits (318), Expect = 1.7e-28
Identity = 66/143 (46.15%), Postives = 89/143 (62.24%), Query Frame = 0


Query: 7   KELKVQLQKLLDKGFIRPSVSPWGAPVLFVNKKDGSMHFCIDYRELNKVTVKNRYPLPKI 66
           +E+   +QKLLD  FI PS SP  +PV+ V KKDG+   C+DYR LNK T+ + +PLP+I
Sbjct: 636 QEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRI 695

Query: 67  DDLFDQLQRATIFSKIDLRSSYHQLRIRDSDIPKTYFRSKYRHYEFIVMSFGLTNAPAVF 126
           D+L  ++  A IF+ +DL S YHQ+ +   D  KT F +    YE+ VM FGL NAP+ F
Sbjct: 696 DNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTF 755

Query: 127 MDLMNRVFTDFLDTFVIVFIDDI 150
              M   F D    FV V++DDI
Sbjct: 756 ARYMADTFRDL--RFVNVYLDDI 776

[Close]

BLAST of Cmc01g0012431 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 4.5e-26
Identity = 57/148 (38.51%), Postives = 92/148 (62.16%), Query Frame = 0


Query: 7   KELKVQLQKLLDKGFIRPSVSPWGAPVLFVNKKDGS-----MHFCIDYRELNKVTVKNRY 66
           +E++ Q+Q +L++G IR S SP+ +P+  V KK  +         IDYR+LN++TV +R+
Sbjct: 221 QEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRH 280

Query: 67  PLPKIDDLFDQLQRATIFSKIDLRSSYHQLRIRDSDIPKTYFRSKYRHYEFIVMSFGLTN 126
           P+P +D++  +L R   F+ IDL   +HQ+ +    + KT F +K+ HYE++ M FGL N
Sbjct: 281 PIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKN 340

Query: 127 APAVFMDLMNRVFTDFLDTFVIVFIDDI 150
           APA F   MN +    L+   +V++DDI
Sbjct: 341 APATFQRCMNDILRPLLNKHCLVYLDDI 368

[Close]

BLAST of Cmc01g0012431 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.3e-25
Identity = 57/147 (38.78%), Postives = 90/147 (61.22%), Query Frame = 0


Query: 8   ELKVQLQKLLDKGFIRPSVSPWGAPVLFVNKKD-----GSMHFCIDYRELNKVTVKNRYP 67
           E++ Q+Q++L++G IR S SP+ +P   V KK            IDYR+LN++T+ +RYP
Sbjct: 221 EVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYP 280

Query: 68  LPKIDDLFDQLQRATIFSKIDLRSSYHQLRIRDSDIPKTYFRSKYRHYEFIVMSFGLTNA 127
           +P +D++  +L +   F+ IDL   +HQ+ + +  I KT F +K  HYE++ M FGL NA
Sbjct: 281 IPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNA 340

Query: 128 PAVFMDLMNRVFTDFLDTFVIVFIDDI 150
           PA F   MN +    L+   +V++DDI
Sbjct: 341 PATFQRCMNNILRPLLNKHCLVYLDDI 367

[Close]

BLAST of Cmc01g0012431 vs. ExPASy TrEMBL
Match: A0A5A7UN68 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G002110 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.1e-70
Identity = 135/149 (90.60%), Postives = 141/149 (94.63%), Query Frame = 0


Query: 1   MAPIELKELKVQLQKLLDKGFIRPSVSPWGAPVLFVNKKDGSMHFCIDYRELNKVTVKNR 60
           MAP+ELKELKVQLQ+LLDKGFIRPSVSPWGAPVLFV KKDGSM  CIDYRELNKVTVKNR
Sbjct: 486 MAPVELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 545

Query: 61  YPLPKIDDLFDQLQRATIFSKIDLRSSYHQLRIRDSDIPKTYFRSKYRHYEFIVMSFGLT 120
           YPLPKIDDLFDQLQ AT+FSKIDL+S YHQLRIRDSDIPKT FRS+Y HYEFIVMSFGLT
Sbjct: 546 YPLPKIDDLFDQLQGATVFSKIDLQSGYHQLRIRDSDIPKTAFRSRYEHYEFIVMSFGLT 605

Query: 121 NAPAVFMDLMNRVFTDFLDTFVIVFIDDI 150
           NAPAVFMDLMNRVF DFLD+FVIVFIDDI
Sbjct: 606 NAPAVFMDLMNRVFKDFLDSFVIVFIDDI 634

[Close]

BLAST of Cmc01g0012431 vs. ExPASy TrEMBL
Match: A0A5A7U8T4 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13G001960 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.4e-70
Identity = 135/149 (90.60%), Postives = 140/149 (93.96%), Query Frame = 0


Query: 1   MAPIELKELKVQLQKLLDKGFIRPSVSPWGAPVLFVNKKDGSMHFCIDYRELNKVTVKNR 60
           MAP ELKELKVQLQ+LLDKGFIRPSVSPWGAPVLFV KKDGSM  CIDY+ELNKVTVKNR
Sbjct: 317 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYKELNKVTVKNR 376

Query: 61  YPLPKIDDLFDQLQRATIFSKIDLRSSYHQLRIRDSDIPKTYFRSKYRHYEFIVMSFGLT 120
           YPLPKIDDLFDQLQ AT+FSKIDLRS YHQLRIRDSDIPKT FRS+Y HYEFIVMSFGLT
Sbjct: 377 YPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYEHYEFIVMSFGLT 436

Query: 121 NAPAVFMDLMNRVFTDFLDTFVIVFIDDI 150
           NAPAVFMDLMNRVF DFLD+FVIVFIDDI
Sbjct: 437 NAPAVFMDLMNRVFKDFLDSFVIVFIDDI 465

[Close]

BLAST of Cmc01g0012431 vs. ExPASy TrEMBL
Match: A0A5D3BG43 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G001100 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 3.1e-70
Identity = 135/149 (90.60%), Postives = 139/149 (93.29%), Query Frame = 0


Query: 1   MAPIELKELKVQLQKLLDKGFIRPSVSPWGAPVLFVNKKDGSMHFCIDYRELNKVTVKNR 60
           MA  ELKELKVQLQ+LLDKGFIRPSVSPWGAPVLFV KKDGSM  CIDYRELNKVTVKNR
Sbjct: 327 MASAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 386

Query: 61  YPLPKIDDLFDQLQRATIFSKIDLRSSYHQLRIRDSDIPKTYFRSKYRHYEFIVMSFGLT 120
           YPLP+IDDLFDQLQRAT+FSKIDLRS YHQLRIRDSDIPKT FRS+Y HYEFIVMSFGLT
Sbjct: 387 YPLPRIDDLFDQLQRATVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYEHYEFIVMSFGLT 446

Query: 121 NAPAVFMDLMNRVFTDFLDTFVIVFIDDI 150
           NAP VFMDLMNRVF DFLDTFVIVFIDDI
Sbjct: 447 NAPTVFMDLMNRVFKDFLDTFVIVFIDDI 475

[Close]

BLAST of Cmc01g0012431 vs. ExPASy TrEMBL
Match: A0A5D3BYT1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold527G00450 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 4.1e-70
Identity = 132/149 (88.59%), Postives = 140/149 (93.96%), Query Frame = 0


Query: 1   MAPIELKELKVQLQKLLDKGFIRPSVSPWGAPVLFVNKKDGSMHFCIDYRELNKVTVKNR 60
           MAP+ELKELKVQLQ+LLDKGFIRPSVSPWGAPVLFV KKDGSMH CIDYRELNKVTVKNR
Sbjct: 681 MAPVELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMHLCIDYRELNKVTVKNR 740

Query: 61  YPLPKIDDLFDQLQRATIFSKIDLRSSYHQLRIRDSDIPKTYFRSKYRHYEFIVMSFGLT 120
           YPLP+IDDLFDQLQ AT+FSKIDLRS YHQLRI+D D+PKT FRS+Y HYEFIVMSFGLT
Sbjct: 741 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 800

Query: 121 NAPAVFMDLMNRVFTDFLDTFVIVFIDDI 150
           NAP VFMDLMNRVF +FLDTFVIVFIDDI
Sbjct: 801 NAPTVFMDLMNRVFREFLDTFVIVFIDDI 829

[Close]

BLAST of Cmc01g0012431 vs. ExPASy TrEMBL
Match: A0A5A7V4E4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72G00400 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 6.9e-70
Identity = 134/149 (89.93%), Postives = 139/149 (93.29%), Query Frame = 0


Query: 1   MAPIELKELKVQLQKLLDKGFIRPSVSPWGAPVLFVNKKDGSMHFCIDYRELNKVTVKNR 60
           MAP ELKELKVQLQ+LLDKGFIRPSVSPWGAPVLFV KKDGSM  CIDYRELNKVTVKNR
Sbjct: 571 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 630

Query: 61  YPLPKIDDLFDQLQRATIFSKIDLRSSYHQLRIRDSDIPKTYFRSKYRHYEFIVMSFGLT 120
           YPLPKIDDLFDQLQ AT+FSKIDLRS YHQLRIRD DIPKT FRS+Y HYEF+VMSFGLT
Sbjct: 631 YPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 690

Query: 121 NAPAVFMDLMNRVFTDFLDTFVIVFIDDI 150
           NAPAVFMDLMNRVF DFLD+FVIVFIDDI
Sbjct: 691 NAPAVFMDLMNRVFKDFLDSFVIVFIDDI 719

The following BLAST results are available for this feature:

BLAST of Cmc01g0012431 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0056047.1	2.2e-70	90.60	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0050011.1	4.9e-70	90.60	pol protein [Cucumis melo var. makuwa]	[more]
TYJ98213.1	6.4e-70	90.60	pol protein [Cucumis melo var. makuwa]	[more]
TYK04315.1	8.4e-70	88.59	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0060745.1	1.4e-69	89.93	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc01g0012431 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P31843	4.4e-29	56.48	RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1	[more]
Q99315	1.7e-28	46.15	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	1.7e-28	46.15	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P04323	4.5e-26	38.51	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	1.3e-25	38.78	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]

BLAST of Cmc01g0012431 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UN68	1.1e-70	90.60	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold31...	[more]
A0A5A7U8T4	2.4e-70	90.60	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13G001960 PE...	[more]
A0A5D3BG43	3.1e-70	90.60	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G001100 P...	[more]
A0A5D3BYT1	4.1e-70	88.59	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold52...	[more]
A0A5A7V4E4	6.9e-70	89.93	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72...	[more]

BLAST of Cmc01g0012431 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 61..149 e-value: 9.8E-60 score: 203.5
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 36..149 e-value: 1.9E-11 score: 43.9
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..121 e-value: 9.8E-60 score: 203.5
None	No IPR available	PANTHER	PTHR15503:SF11	RETROTRANSPOSON GAG-LIKE PROTEIN 6	coord: 5..148
None	No IPR available	CDD	cd01647	RT_LTR	coord: 20..149 e-value: 3.60413E-63 score: 189.344
IPR032567	LDOC1-related	PANTHER	PTHR15503	LDOC1 RELATED	coord: 5..148
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0012431.1	Cmc01g0012431.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding