Cmc01g0012411 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0012411
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr01: 8586405 .. 8587046 (-)
RNA-Seq Expression	Cmc01g0012411
Synteny	Cmc01g0012411

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGACTTTGCATCGATTACAGAGAGCTGAATAAGGTGATAGTGAAGAACTGCTACCCATTACCGAGGATTGATGACTTGTTCGATCAGTTGCAGGGAGTAATTGTTTTCTCTAAGATTGATCTGCGGTCAGGCTACCACCAGCTGATGATTAGAGACAGTGACATCCCTAAGACTGCTTTCCATTCCAGATATGGACATTATGAGTTTATTGTAATGTCCTTTGGCTTGACTAATGCTTCTGTTGTATTCATGGACCTAATAAAGAGGGTGTTCAAGAACTTCTTGGACACTTTTGTTGTAGTTTTTATTGATGATATCCTGGTTTACTCCAAGACAGAGGCCGAGCATATGAAGCATTTGCATCAGGTTTTAGAGATCCTTCGAGTCAATAATTTATATGCTAAGTTCTCTATGTGCGAGTTCTGGCTGAAGAAGGTGTCTTTTCTTGGCCACATCGTATCTAGTGATGGAGTTTCTGTTGACCCAGCAAAGATTGAAGTTGTTACCAGTTGGCCTCGACCGTCTACAGTCAACGAGGTTCGTAGTTTTCTGGGTCTAGCAAGTTATTACAGAAGATTCGTGGAAGGCTTCTCTTGTATAGCTAGTCCCTTGACCAGGAAGGGGACTTCGTTTGTTTAG

mRNA sequence

ATGCGACTTTGCATCGATTACAGAGAGCTGAATAAGGTGATAGTGAAGAACTGCTACCCATTACCGAGGATTGATGACTTGTTCGATCAGTTGCAGGGAGTAATTGTTTTCTCTAAGATTGATCTGCGGTCAGGCTACCACCAGCTGATGATTAGAGACAGTGACATCCCTAAGACTGCTTTCCATTCCAGATATGGACATTATGAGTTTATTGTAATGTCCTTTGGCTTGACTAATGCTTCTGTTGTATTCATGGACCTAATAAAGAGGGTGTTCAAGAACTTCTTGGACACTTTTGTTGTAGTTTTTATTGATGATATCCTGGTTTACTCCAAGACAGAGGCCGAGCATATGAAGCATTTGCATCAGGTTTTAGAGATCCTTCGAGTCAATAATTTATATGCTAAGTTCTCTATGTGCGAGTTCTGGCTGAAGAAGGTGTCTTTTCTTGGCCACATCGTATCTAGTGATGGAGTTTCTGTTGACCCAGCAAAGATTGAAGTTGTTACCAGTTGGCCTCGACCGTCTACAGTCAACGAGGTTCGTAGTTTTCTGGGTCTAGCAAGTTATTACAGAAGATTCGTGGAAGGCTTCTCTTGTATAGCTAGTCCCTTGACCAGGAAGGGGACTTCGTTTGTTTAG

Coding sequence (CDS)

ATGCGACTTTGCATCGATTACAGAGAGCTGAATAAGGTGATAGTGAAGAACTGCTACCCATTACCGAGGATTGATGACTTGTTCGATCAGTTGCAGGGAGTAATTGTTTTCTCTAAGATTGATCTGCGGTCAGGCTACCACCAGCTGATGATTAGAGACAGTGACATCCCTAAGACTGCTTTCCATTCCAGATATGGACATTATGAGTTTATTGTAATGTCCTTTGGCTTGACTAATGCTTCTGTTGTATTCATGGACCTAATAAAGAGGGTGTTCAAGAACTTCTTGGACACTTTTGTTGTAGTTTTTATTGATGATATCCTGGTTTACTCCAAGACAGAGGCCGAGCATATGAAGCATTTGCATCAGGTTTTAGAGATCCTTCGAGTCAATAATTTATATGCTAAGTTCTCTATGTGCGAGTTCTGGCTGAAGAAGGTGTCTTTTCTTGGCCACATCGTATCTAGTGATGGAGTTTCTGTTGACCCAGCAAAGATTGAAGTTGTTACCAGTTGGCCTCGACCGTCTACAGTCAACGAGGTTCGTAGTTTTCTGGGTCTAGCAAGTTATTACAGAAGATTCGTGGAAGGCTTCTCTTGTATAGCTAGTCCCTTGACCAGGAAGGGGACTTCGTTTGTTTAG

Protein sequence

MRLCIDYRELNKVIVKNCYPLPRIDDLFDQLQGVIVFSKIDLRSGYHQLMIRDSDIPKTAFHSRYGHYEFIVMSFGLTNASVVFMDLIKRVFKNFLDTFVVVFIDDILVYSKTEAEHMKHLHQVLEILRVNNLYAKFSMCEFWLKKVSFLGHIVSSDGVSVDPAKIEVVTSWPRPSTVNEVRSFLGLASYYRRFVEGFSCIASPLTRKGTSFV

Homology

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BLAST of Cmc01g0012411 vs. NCBI nr
Match: KAA0033486.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 369.4 bits (947), Expect = 2.1e-98
Identity = 180/216 (83.33%), Postives = 194/216 (89.81%), Query Frame = 0


Query: 1   MRLCIDYRELNKVIVKNCYPLPRIDDLFDQLQGVIVFSKIDLRSGYHQLMIRDSDIPKTA 60
           MRLCIDYRELNKV VKNCYPLPRIDDLFDQLQG  VFSKIDLRSGYHQL IRDSDIPKTA
Sbjct: 641 MRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 700

Query: 61  FHSRYGHYEFIVMSFGLTNASVVFMDLIKRVFKNFLDTFVVVFIDDILVYSKTEAEHMKH 120
           F SRYGHYEF+VMSFGLTNA  VFMDL+ RVFK+FLD+FV+VFIDDIL+YSKTEAEH +H
Sbjct: 701 FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 760

Query: 121 LHQVLEILRVNNLYAKFSMCEFWLKKVSFLGHIVSSDGVSVDPAKIEVVTSWPRPSTVNE 180
           LHQVLE LR N LYAKFS CEFWL+KV+FLGH+VS +GVSVDPAKIE VT+WPRPSTV+E
Sbjct: 761 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSREGVSVDPAKIEAVTNWPRPSTVSE 820

Query: 181 VRSFLGLASYYRRFVEGFSCIASP---LTRKGTSFV 214
           +RSFLGLA YYRRFVE FS IASP   LTRKGT FV
Sbjct: 821 IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFV 856

[Close]

BLAST of Cmc01g0012411 vs. NCBI nr
Match: KAA0066101.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 369.0 bits (946), Expect = 2.7e-98
Identity = 182/216 (84.26%), Postives = 194/216 (89.81%), Query Frame = 0


Query: 1   MRLCIDYRELNKVIVKNCYPLPRIDDLFDQLQGVIVFSKIDLRSGYHQLMIRDSDIPKTA 60
           MRLCIDYRELNKV +KN YPLPRIDDLFDQLQG  VFSKIDLRSGYHQL IRDSDIPKTA
Sbjct: 641 MRLCIDYRELNKVTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 700

Query: 61  FHSRYGHYEFIVMSFGLTNASVVFMDLIKRVFKNFLDTFVVVFIDDILVYSKTEAEHMKH 120
           F SRYGHYEFIVMSFGLTNA  VFMDL+ RVFK+FLD+FV+VFIDDIL+YSKTEAEH +H
Sbjct: 701 FRSRYGHYEFIVMSFGLTNALAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 760

Query: 121 LHQVLEILRVNNLYAKFSMCEFWLKKVSFLGHIVSSDGVSVDPAKIEVVTSWPRPSTVNE 180
           LHQVLE LR N LYAKFS CEFWLKKV+FLGH+VSSDGVSVDPAKIE VT+WPRPSTV+E
Sbjct: 761 LHQVLETLRANKLYAKFSKCEFWLKKVTFLGHVVSSDGVSVDPAKIEAVTNWPRPSTVSE 820

Query: 181 VRSFLGLASYYRRFVEGFSCIASP---LTRKGTSFV 214
           +RSFLGLA YYRRFVE FS IASP   LTRKGT FV
Sbjct: 821 IRSFLGLAGYYRRFVEDFSRIASPLTLLTRKGTPFV 856

[Close]

BLAST of Cmc01g0012411 vs. NCBI nr
Match: KAA0058812.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 367.1 bits (941), Expect = 1.0e-97
Identity = 178/216 (82.41%), Postives = 194/216 (89.81%), Query Frame = 0


Query: 1   MRLCIDYRELNKVIVKNCYPLPRIDDLFDQLQGVIVFSKIDLRSGYHQLMIRDSDIPKTA 60
           MRLCIDYRELNKV +KN YPLPRIDDLFDQLQG  VFSKIDLRSGYHQL IRD DIPKTA
Sbjct: 528 MRLCIDYRELNKVTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 587

Query: 61  FHSRYGHYEFIVMSFGLTNASVVFMDLIKRVFKNFLDTFVVVFIDDILVYSKTEAEHMKH 120
           FHSRYGHYEF+VMSFGLTNA  VFMDL+ RVFK+F+D+FV+VFIDDIL+YSKTEAEH +H
Sbjct: 588 FHSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFIDSFVIVFIDDILIYSKTEAEHEEH 647

Query: 121 LHQVLEILRVNNLYAKFSMCEFWLKKVSFLGHIVSSDGVSVDPAKIEVVTSWPRPSTVNE 180
           LHQVLE LR N LYAKFS CEFWL+KV+FLGH+VSS+GVSVDPAKIE VT+WPRPSTV+E
Sbjct: 648 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 707

Query: 181 VRSFLGLASYYRRFVEGFSCIASP---LTRKGTSFV 214
           +RSFLGLA YYRRFVE FS IASP   LTRKGT FV
Sbjct: 708 IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFV 743

[Close]

BLAST of Cmc01g0012411 vs. NCBI nr
Match: KAA0051719.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 366.3 bits (939), Expect = 1.8e-97
Identity = 179/216 (82.87%), Postives = 193/216 (89.35%), Query Frame = 0


Query: 1   MRLCIDYRELNKVIVKNCYPLPRIDDLFDQLQGVIVFSKIDLRSGYHQLMIRDSDIPKTA 60
           MRLCIDYRELNKV VKNCYPLPRIDDLFDQLQG  VFSKIDLRSGYHQL  RDSDIPKTA
Sbjct: 601 MRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRFRDSDIPKTA 660

Query: 61  FHSRYGHYEFIVMSFGLTNASVVFMDLIKRVFKNFLDTFVVVFIDDILVYSKTEAEHMKH 120
           F  RYGHYEFIVMSFGLTNA  VFMDL+ RVFK+FLD+FV+VFIDDIL+YSKTEAEH +H
Sbjct: 661 FRLRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 720

Query: 121 LHQVLEILRVNNLYAKFSMCEFWLKKVSFLGHIVSSDGVSVDPAKIEVVTSWPRPSTVNE 180
           LHQVLE LR N LYAKFS CEFWL+KV+FLGH+VSS+GVSVDPAKIE VT+WPRPSTV+E
Sbjct: 721 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 780

Query: 181 VRSFLGLASYYRRFVEGFSCIASP---LTRKGTSFV 214
           +RSFLGLA YYRRFVE FS IASP   LTR+GT FV
Sbjct: 781 IRSFLGLAGYYRRFVEDFSRIASPLTQLTREGTPFV 816

[Close]

BLAST of Cmc01g0012411 vs. NCBI nr
Match: KAA0040693.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 366.3 bits (939), Expect = 1.8e-97
Identity = 178/216 (82.41%), Postives = 192/216 (88.89%), Query Frame = 0


Query: 1   MRLCIDYRELNKVIVKNCYPLPRIDDLFDQLQGVIVFSKIDLRSGYHQLMIRDSDIPKTA 60
           MRLCIDYRELNKV VKNCYPLPRIDDLFDQLQG  VFSKIDLRSGYHQL IRD DIPKTA
Sbjct: 398 MRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 457

Query: 61  FHSRYGHYEFIVMSFGLTNASVVFMDLIKRVFKNFLDTFVVVFIDDILVYSKTEAEHMKH 120
           F SRYGHYEF+VMSFGLTNA  VFMDL+ RVFK+FLD+FV+VFIDDI+VYSKTE EH +H
Sbjct: 458 FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDIMVYSKTEVEHEEH 517

Query: 121 LHQVLEILRVNNLYAKFSMCEFWLKKVSFLGHIVSSDGVSVDPAKIEVVTSWPRPSTVNE 180
           LHQVLE LR N LYAKFS CEFWL+KV+FLGH+VSS+GVSVDP KIE VT+WPRPSTV+E
Sbjct: 518 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPTKIEAVTNWPRPSTVSE 577

Query: 181 VRSFLGLASYYRRFVEGFSCIASP---LTRKGTSFV 214
           +RSFLGLA YYRRFVE FS IASP   LTRKGT FV
Sbjct: 578 IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFV 613

[Close]

BLAST of Cmc01g0012411 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.3e-42
Identity = 78/205 (38.05%), Postives = 129/205 (62.93%), Query Frame = 0


Query: 2   RLCIDYRELNKVIVKNCYPLPRIDDLFDQLQGVIVFSKIDLRSGYHQLMIRDSDIPKTAF 61
           R+ IDYR+LN++ + + YP+P +D++  +L     F+ IDL  G+HQ+ + +  I KTAF
Sbjct: 262 RVVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAF 321

Query: 62  HSRYGHYEFIVMSFGLTNASVVFMDLIKRVFKNFLDTFVVVFIDDILVYSKTEAEHMKHL 121
            ++ GHYE++ M FGL NA   F   +  + +  L+   +V++DDI+++S +  EH+  +
Sbjct: 322 STKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSI 381

Query: 122 HQVLEILRVNNLYAKFSMCEFWLKKVSFLGHIVSSDGVSVDPAKIEVVTSWPRPSTVNEV 181
             V   L   NL  +   CEF  K+ +FLGHIV+ DG+  +P K++ + S+P P+   E+
Sbjct: 382 QLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEI 441

Query: 182 RSFLGLASYYRRFVEGFSCIASPLT 207
           R+FLGL  YYR+F+  ++ IA P+T
Sbjct: 442 RAFLGLTGYYRKFIPNYADIAKPMT 466

[Close]

BLAST of Cmc01g0012411 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.8e-42
Identity = 78/206 (37.86%), Postives = 131/206 (63.59%), Query Frame = 0


Query: 2   RLCIDYRELNKVIVKNCYPLPRIDDLFDQLQGVIVFSKIDLRSGYHQLMIRDSDIPKTAF 61
           R+ IDYR+LN++ V + +P+P +D++  +L     F+ IDL  G+HQ+ +    + KTAF
Sbjct: 263 RIVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAF 322

Query: 62  HSRYGHYEFIVMSFGLTNASVVFMDLIKRVFKNFLDTFVVVFIDDILVYSKTEAEHMKHL 121
            +++GHYE++ M FGL NA   F   +  + +  L+   +V++DDI+V+S +  EH++ L
Sbjct: 323 STKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSL 382

Query: 122 HQVLEILRVNNLYAKFSMCEFWLKKVSFLGHIVSSDGVSVDPAKIEVVTSWPRPSTVNEV 181
             V E L   NL  +   CEF  ++ +FLGH+++ DG+  +P KIE +  +P P+   E+
Sbjct: 383 GLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEI 442

Query: 182 RSFLGLASYYRRFVEGFSCIASPLTR 208
           ++FLGL  YYR+F+  F+ IA P+T+
Sbjct: 443 KAFLGLTGYYRKFIPNFADIAKPMTK 468

[Close]

BLAST of Cmc01g0012411 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 3.2e-41
Identity = 79/205 (38.54%), Postives = 126/205 (61.46%), Query Frame = 0


Query: 2   RLCIDYRELNKVIVKNCYPLPRIDDLFDQLQGVIVFSKIDLRSGYHQLMIRDSDIPKTAF 61
           R+ +D++ LN V + + YP+P I+     L     F+ +DL SG+HQ+ +++SDIPKTAF
Sbjct: 179 RMVVDFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAF 238

Query: 62  HSRYGHYEFIVMSFGLTNASVVFMDLIKRVFKNFLDTFVVVFIDDILVYSKTEAEHMKHL 121
            +  G YEF+ + FGL NA  +F  +I  + +  +     V+IDDI+V+S+    H K+L
Sbjct: 239 STLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNL 298

Query: 122 HQVLEILRVNNLYAKFSMCEFWLKKVSFLGHIVSSDGVSVDPAKIEVVTSWPRPSTVNEV 181
             VL  L   NL        F   +V FLG+IV++DG+  DP K+  ++  P P++V E+
Sbjct: 299 RLVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKEL 358

Query: 182 RSFLGLASYYRRFVEGFSCIASPLT 207
           + FLG+ SYYR+F++ ++ +A PLT
Sbjct: 359 KRFLGMTSYYRKFIQDYAKVAKPLT 383

[Close]

BLAST of Cmc01g0012411 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.7e-40
Identity = 80/205 (39.02%), Postives = 125/205 (60.98%), Query Frame = 0


Query: 2   RLCIDYRELNKVIVKNCYPLPRIDDLFDQLQGVIVFSKIDLRSGYHQLMIRDSDIPKTAF 61
           RL ID+R+LN+  + + YP+P I  +   L     F+ +DL+SGYHQ+ + + D  KT+F
Sbjct: 238 RLVIDFRKLNEKTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSF 297

Query: 62  HSRYGHYEFIVMSFGLTNASVVFMDLIKRVFKNFLDTFVVVFIDDILVYSKTEAEHMKHL 121
               G YEF  + FGL NAS +F   +  V +  +     V++DD++++S+ E++H++H+
Sbjct: 298 SVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHI 357

Query: 122 HQVLEILRVNNLYAKFSMCEFWLKKVSFLGHIVSSDGVSVDPAKIEVVTSWPRPSTVNEV 181
             VL+ L   N+        F+ + V +LG IVS DG   DP K++ +  +P P  V +V
Sbjct: 358 DTVLKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKV 417

Query: 182 RSFLGLASYYRRFVEGFSCIASPLT 207
           RSFLGLASYYR F++ F+ IA P+T
Sbjct: 418 RSFLGLASYYRVFIKDFAAIARPIT 442

[Close]

BLAST of Cmc01g0012411 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 165.2 bits (417), Expect = 7.9e-40
Identity = 83/204 (40.69%), Postives = 122/204 (59.80%), Query Frame = 0


Query: 2   RLCIDYRELNKVIVKNCYPLPRIDDLFDQLQGVIVFSKIDLRSGYHQLMIRDSDIPKTAF 61
           RLC+DYR LNK  + + +PLPRID+L  ++    +F+ +DL SGYHQ+ +   D  KTAF
Sbjct: 647 RLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAF 706

Query: 62  HSRYGHYEFIVMSFGLTNASVVFMDLIKRVFKNFLDTFVVVFIDDILVYSKTEAEHMKHL 121
            +  G YE+ VM FGL NA   F   +   F++    FV V++DDIL++S++  EH KHL
Sbjct: 707 VTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHL 766

Query: 122 HQVLEILRVNNLYAKFSMCEFWLKKVSFLGHIVSSDGVSVDPAKIEVVTSWPRPSTVNEV 181
             VLE L+  NL  K   C+F  ++  FLG+ +    ++    K   +  +P P TV + 
Sbjct: 767 DTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQA 826

Query: 182 RSFLGLASYYRRFVEGFSCIASPL 206
           + FLG+ +YYRRF+   S IA P+
Sbjct: 827 QRFLGMINYYRRFIPNCSKIAQPI 848

[Close]

BLAST of Cmc01g0012411 vs. ExPASy TrEMBL
Match: A0A5A7SU25 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00200 PE=4 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 1.0e-98
Identity = 180/216 (83.33%), Postives = 194/216 (89.81%), Query Frame = 0


Query: 1   MRLCIDYRELNKVIVKNCYPLPRIDDLFDQLQGVIVFSKIDLRSGYHQLMIRDSDIPKTA 60
           MRLCIDYRELNKV VKNCYPLPRIDDLFDQLQG  VFSKIDLRSGYHQL IRDSDIPKTA
Sbjct: 641 MRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 700

Query: 61  FHSRYGHYEFIVMSFGLTNASVVFMDLIKRVFKNFLDTFVVVFIDDILVYSKTEAEHMKH 120
           F SRYGHYEF+VMSFGLTNA  VFMDL+ RVFK+FLD+FV+VFIDDIL+YSKTEAEH +H
Sbjct: 701 FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 760

Query: 121 LHQVLEILRVNNLYAKFSMCEFWLKKVSFLGHIVSSDGVSVDPAKIEVVTSWPRPSTVNE 180
           LHQVLE LR N LYAKFS CEFWL+KV+FLGH+VS +GVSVDPAKIE VT+WPRPSTV+E
Sbjct: 761 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSREGVSVDPAKIEAVTNWPRPSTVSE 820

Query: 181 VRSFLGLASYYRRFVEGFSCIASP---LTRKGTSFV 214
           +RSFLGLA YYRRFVE FS IASP   LTRKGT FV
Sbjct: 821 IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFV 856

[Close]

BLAST of Cmc01g0012411 vs. ExPASy TrEMBL
Match: A0A5A7VK60 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G00930 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.3e-98
Identity = 182/216 (84.26%), Postives = 194/216 (89.81%), Query Frame = 0


Query: 1   MRLCIDYRELNKVIVKNCYPLPRIDDLFDQLQGVIVFSKIDLRSGYHQLMIRDSDIPKTA 60
           MRLCIDYRELNKV +KN YPLPRIDDLFDQLQG  VFSKIDLRSGYHQL IRDSDIPKTA
Sbjct: 641 MRLCIDYRELNKVTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 700

Query: 61  FHSRYGHYEFIVMSFGLTNASVVFMDLIKRVFKNFLDTFVVVFIDDILVYSKTEAEHMKH 120
           F SRYGHYEFIVMSFGLTNA  VFMDL+ RVFK+FLD+FV+VFIDDIL+YSKTEAEH +H
Sbjct: 701 FRSRYGHYEFIVMSFGLTNALAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 760

Query: 121 LHQVLEILRVNNLYAKFSMCEFWLKKVSFLGHIVSSDGVSVDPAKIEVVTSWPRPSTVNE 180
           LHQVLE LR N LYAKFS CEFWLKKV+FLGH+VSSDGVSVDPAKIE VT+WPRPSTV+E
Sbjct: 761 LHQVLETLRANKLYAKFSKCEFWLKKVTFLGHVVSSDGVSVDPAKIEAVTNWPRPSTVSE 820

Query: 181 VRSFLGLASYYRRFVEGFSCIASP---LTRKGTSFV 214
           +RSFLGLA YYRRFVE FS IASP   LTRKGT FV
Sbjct: 821 IRSFLGLAGYYRRFVEDFSRIASPLTLLTRKGTPFV 856

[Close]

BLAST of Cmc01g0012411 vs. ExPASy TrEMBL
Match: A0A5A7USG7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold339G002890 PE=4 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 5.0e-98
Identity = 178/216 (82.41%), Postives = 194/216 (89.81%), Query Frame = 0


Query: 1   MRLCIDYRELNKVIVKNCYPLPRIDDLFDQLQGVIVFSKIDLRSGYHQLMIRDSDIPKTA 60
           MRLCIDYRELNKV +KN YPLPRIDDLFDQLQG  VFSKIDLRSGYHQL IRD DIPKTA
Sbjct: 528 MRLCIDYRELNKVTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 587

Query: 61  FHSRYGHYEFIVMSFGLTNASVVFMDLIKRVFKNFLDTFVVVFIDDILVYSKTEAEHMKH 120
           FHSRYGHYEF+VMSFGLTNA  VFMDL+ RVFK+F+D+FV+VFIDDIL+YSKTEAEH +H
Sbjct: 588 FHSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFIDSFVIVFIDDILIYSKTEAEHEEH 647

Query: 121 LHQVLEILRVNNLYAKFSMCEFWLKKVSFLGHIVSSDGVSVDPAKIEVVTSWPRPSTVNE 180
           LHQVLE LR N LYAKFS CEFWL+KV+FLGH+VSS+GVSVDPAKIE VT+WPRPSTV+E
Sbjct: 648 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 707

Query: 181 VRSFLGLASYYRRFVEGFSCIASP---LTRKGTSFV 214
           +RSFLGLA YYRRFVE FS IASP   LTRKGT FV
Sbjct: 708 IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFV 743

[Close]

BLAST of Cmc01g0012411 vs. ExPASy TrEMBL
Match: A0A5A7UE01 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G001050 PE=4 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 8.6e-98
Identity = 179/216 (82.87%), Postives = 193/216 (89.35%), Query Frame = 0


Query: 1   MRLCIDYRELNKVIVKNCYPLPRIDDLFDQLQGVIVFSKIDLRSGYHQLMIRDSDIPKTA 60
           MRLCIDYRELNKV VKNCYPLPRIDDLFDQLQG  VFSKIDLRSGYHQL  RDSDIPKTA
Sbjct: 601 MRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRFRDSDIPKTA 660

Query: 61  FHSRYGHYEFIVMSFGLTNASVVFMDLIKRVFKNFLDTFVVVFIDDILVYSKTEAEHMKH 120
           F  RYGHYEFIVMSFGLTNA  VFMDL+ RVFK+FLD+FV+VFIDDIL+YSKTEAEH +H
Sbjct: 661 FRLRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 720

Query: 121 LHQVLEILRVNNLYAKFSMCEFWLKKVSFLGHIVSSDGVSVDPAKIEVVTSWPRPSTVNE 180
           LHQVLE LR N LYAKFS CEFWL+KV+FLGH+VSS+GVSVDPAKIE VT+WPRPSTV+E
Sbjct: 721 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 780

Query: 181 VRSFLGLASYYRRFVEGFSCIASP---LTRKGTSFV 214
           +RSFLGLA YYRRFVE FS IASP   LTR+GT FV
Sbjct: 781 IRSFLGLAGYYRRFVEDFSRIASPLTQLTREGTPFV 816

[Close]

BLAST of Cmc01g0012411 vs. ExPASy TrEMBL
Match: A0A5A7TC72 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold529G00070 PE=4 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 8.6e-98
Identity = 178/216 (82.41%), Postives = 192/216 (88.89%), Query Frame = 0


Query: 1   MRLCIDYRELNKVIVKNCYPLPRIDDLFDQLQGVIVFSKIDLRSGYHQLMIRDSDIPKTA 60
           MRLCIDYRELNKV VKNCYPLPRIDDLFDQLQG  VFSKIDLRSGYHQL IRD DIPKTA
Sbjct: 398 MRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 457

Query: 61  FHSRYGHYEFIVMSFGLTNASVVFMDLIKRVFKNFLDTFVVVFIDDILVYSKTEAEHMKH 120
           F SRYGHYEF+VMSFGLTNA  VFMDL+ RVFK+FLD+FV+VFIDDI+VYSKTE EH +H
Sbjct: 458 FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDIMVYSKTEVEHEEH 517

Query: 121 LHQVLEILRVNNLYAKFSMCEFWLKKVSFLGHIVSSDGVSVDPAKIEVVTSWPRPSTVNE 180
           LHQVLE LR N LYAKFS CEFWL+KV+FLGH+VSS+GVSVDP KIE VT+WPRPSTV+E
Sbjct: 518 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPTKIEAVTNWPRPSTVSE 577

Query: 181 VRSFLGLASYYRRFVEGFSCIASP---LTRKGTSFV 214
           +RSFLGLA YYRRFVE FS IASP   LTRKGT FV
Sbjct: 578 IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFV 613

[Close]

BLAST of Cmc01g0012411 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 90.5 bits (223), Expect = 1.8e-18
Identity = 42/91 (46.15%), Postives = 55/91 (60.44%), Query Frame = 0


Query: 118 MKHLHQVLEILRVNNLYAKFSMCEFWLKKVSFLG--HIVSSDGVSVDPAKIEVVTSWPRP 177
           M HL  VL+I   +  YA    C F   ++++LG  HI+S +GVS DPAK+E +  WP P
Sbjct: 1   MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60

Query: 178 STVNEVRSFLGLASYYRRFVEGFSCIASPLT 207
               E+R FLGL  YYRRFV+ +  I  PLT
Sbjct: 61  KNTTELRGFLGLTGYYRRFVKNYGKIVRPLT 91

The following BLAST results are available for this feature:

BLAST of Cmc01g0012411 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033486.1	2.1e-98	83.33	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0066101.1	2.7e-98	84.26	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0058812.1	1.0e-97	82.41	pol protein [Cucumis melo var. makuwa]	[more]
KAA0051719.1	1.8e-97	82.87	pol protein [Cucumis melo var. makuwa]	[more]
KAA0040693.1	1.8e-97	82.41	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc01g0012411 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	1.3e-42	38.05	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	3.8e-42	37.86	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	3.2e-41	38.54	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P10401	2.7e-40	39.02	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
Q99315	7.9e-40	40.69	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc01g0012411 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SU25	1.0e-98	83.33	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold26...	[more]
A0A5A7VK60	1.3e-98	84.26	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21...	[more]
A0A5A7USG7	5.0e-98	82.41	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold33...	[more]
A0A5A7UE01	8.6e-98	82.87	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60...	[more]
A0A5A7TC72	8.6e-98	82.41	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Cmc01g0012411 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	1.8e-18	46.15	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..79 e-value: 4.5E-61 score: 207.8
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 2..207
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..207
None	No IPR available	CDD	cd01647	RT_LTR	coord: 2..154 e-value: 7.72698E-74 score: 219.389
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 164..209 e-value: 1.5E-15 score: 59.0
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 19..154 e-value: 4.5E-61 score: 207.8
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 3..153 e-value: 1.1E-17 score: 64.3
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..207

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0012411.1	Cmc01g0012411.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding