Cmc01g0012301 (gene) Melon (Charmono) v1.1

Overview
NameCmc01g0012301
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
LocationCMiso1.1chr01: 8295812 .. 8297868 (+)
RNA-Seq ExpressionCmc01g0012301
SyntenyCmc01g0012301
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCAACAAGAAGCGGAGGACGCACCAGACGTTATTACTGGTACGATTCTTATTTGTAATGTACCTGCAGATGTTTTATTTGATCCAGGTGCTACGCATTCCTTTGTTTCTAGTATATTTCTGACTAAGTTGAATAGGATGCTAGAGCCTTTATCTGAGGGGTTAGCTATACACACTCCAGTTGGTGACGTTTTACTTGTTAATGAGGTGTTACGTAATTGTGAAGTTTTAGTAGAAGGTATCAGTTTGCTAGTGGACTTGCTACCACTAGAGTTGCAGAGGTTAGATGTAATTTTGGGAATGGATTTCTTATTTGCTCACTATGCATCTATGGATTGCCATAGGAAAGAAGTGGTTTTCAGAAAACCAGGCTTTGCTGAAGTGGTTTTTAGAGGTGTGAGGAAGGCCGTTTCTAGAAGTTTAATCTCAGTTTTGAAAGCTGAGAAATTACTGAGGAAGGGTTGCACAGCGTTTCTTGCACACATCGTAGTAGTGCAGAGAGAAAAGCTAAAGCCAGAAGATGTTCCTGTGGTGAAAGAGTTTCTTGATGTATTTCCAAATGATCTGTCAGGTTTGCCACCTGATAGAGAGATTGAGTTCACCATTGAATTATTACCAGGAACAGCACCTATTTCACAGGCCCCGTATAGAATGGCTCCAAGCGAGCTAAAAGAATTGAAGATGCAGTTACAAGAACTAGTTGACAAGGGATACATCAGGCCTAGTGTTTTGCCATGGGGAGTACCAGTGCTATTTGTGAAAAAGAAAGATGGTACCCTCAGATTATGTATTGACTATAGACAGTTAAACAAGGTTACAATACGTAACAAGTATCCTTTACTACGCATCAATGACTTATTTGATCAACTAAGGGGAGCAGCGTTGTTCTCTAAGATTGACTTAAGGTCAGGATACCACCAGTTGAAGGTTAGAGAATCAGATATTGCTAAGACAACATTTAGAACGAGGTATGGGCATTATGAGTTTCGAGTTATGCCATTCGGTTTAACGAATGCGCCAGCGGTTTTCATGGATCTCATGAACAGGATCTTCCATCGGTATTTAGATAAGTTTGTGATTGTGTTCATTGATGATATATTAGTTTACTCGGTTGACAGAGAATTTCATGAGGAACATCTGAGGATTGTTCTACAGACTCTACGTGAAAAACAGTTATCGCTAAGTTCAGCAAATGTGAGTTCTGGTTGGAACAAGTAGTATTTTTGGGGCATGTAGTTTCAGCAAAAGGAGTTAGTGTCGATCCACAAAAAGTAGAAGCGGTTGTCAATTGGGAAAGACCAATTAGTGCGACAGAAGTACGTAGTTTCCTGGGTTTGGCAGGATACTATAGGCGTTTTATTGAGGACTTCTCTCGATTGGCATTGCCTTTGACCGCTTTGACAAGGAAGAATGTTAAGTTTGAGTGGTCAGATAAATGCGAGCAAAGTTTTCAGCAATTGAAGAAAAGACTAGTTACAGCACCTATTTTGGCACTTCCTGTAACAGGGAAGGACTATGTGATTTATTGTAATGCTTCAAGGCTAGGATTAGGTTGTGTGCTTATGCAAAATGGGAATGTAATAGCTTATGCTTCAAGGCAGTTGAAGGAGCATGAGTGTAATTACCCTACCCATGATCTTGAGCTAGCAGCAGTTGTTTTAGCACTAAAAATCTGGGAAAAGTGCCATATTTTCACAGATCATAATAGTCTGAAGTATATTTTTGATCAGAAAGAGCTAAATCTGAGACAAAGGCGATGGCTAGAACTGATTAAAGATTATGATTGTACTATAGAGTATCATCCAGGTAAGGCCAATGTAGTAGCAGATGCATTAAGTAGGAAGTCAAGACTTCCGAAGAGTGCCTTGTGTGGTATTCGAGTAGCTTTGTTGAATGAGTTAAGAGGTTCCAAGGCAGTAGTAACTACAGAGGATTCAGGAAGTCTCTTAGCTCAATTTCAGGTTCGGTCTTCTCTAGTAACTGAGATTGTAAGAAGACAATCAGAAGACAGTAATTTACAGAAGAAGTTTGAGAAATCCAAGAAAGGCTTATAG

mRNA sequence

ATGACTCAACAAGAAGCGGAGGACGCACCAGACGTTATTACTGGTACGATTCTTATTTGTAATGTACCTGCAGATGTTTTATTTGATCCAGGTGCTACGCATTCCTTTGTTTCTAGTATATTTCTGACTAAGTTGAATAGGATGCTAGAGCCTTTATCTGAGGGGTTAGCTATACACACTCCAGTTGGTGACGTTTTACTTGTTAATGAGGTGTTACGTAATTGTGAAGTTTTAGTAGAAGGTATCAGTTTGCTAGTGGACTTGCTACCACTAGAGTTGCAGAGGAAAGAAGTGGTTTTCAGAAAACCAGGCTTTGCTGAAGTGGTTTTTAGAGGTGTGAGGAAGGCCGTTTCTAGAAGTTTAATCTCAGTTTTGAAAGCTGAGAAATTACTGAGGAAGGGTTGCACAGCGTTTCTTGCACACATCGTAGTAGTGCAGAGAGAAAAGCTAAAGCCAGAAGATGTTCCTGTGGTGAAAGAGTTTCTTGATGTATTTCCAAATGATCTGTCAGGTTTGCCACCTGATAGAGAGATTGAGTTCACCATTGAATTATTACCAGGAACAGCACCTATTTCACAGGCCCCGTATAGAATGGCTCCAAGCGAGCTAAAAGAATTGAAGATGCAGTTACAAGAACTAGTTGACAAGGGATACATCAGGCCTAGTGTTTTGCCATGGGGAGTACCAGTGCTATTTGTGAAAAAGAAAGATGGTACCCTCAGATTATGTATTGACTATAGACAGTTAAACAAGGTTACAATACGTAACAAGTATCCTTTACTACGCATCAATGACTTATTTGATCAACTAAGGGGAGCAGCGTTGTTCTCTAAGATTGACTTAAGGTCAGGATACCACCAGTTGAAGGTTAGAGAATCAGATATTGCTAAGACAACATTTAGAACGAGGTATGGGCATTATGAGTTTCGAGTTATGCCATTCGGTTTAACGAATGCGCCAGCGGTTTTCATGGATCTCATGAACAGGATCTTCCATCGGTATTTAGATAAGTTTGTGATTGTGTTCATTGATGATATATTAGTTTACTCGGTTGACAGAGAATTTCATGAGGAACATCTGAGGATTGTTCTACAGACTCTACTTTCAGCAAAAGGAGTTAGTGTCGATCCACAAAAAGTAGAAGCGGTTGTCAATTGGGAAAGACCAATTAGTGCGACAGAAGTACGTAGTTTCCTGGGTTTGGCAGGATACTATAGGCGTTTTATTGAGGACTTCTCTCGATTGGCATTGCCTTTGACCGCTTTGACAAGGAAGAATGTTAAGTTTGAGTGGTCAGATAAATGCGAGCAAAGTTTTCAGCAATTGAAGAAAAGACTAGTTACAGCACCTATTTTGGCACTTCCTGTAACAGGGAAGGACTATGTGATTTATTGTAATGCTTCAAGGCTAGGATTAGGTTGTGTGCTTATGCAAAATGGGAATGTAATAGCTTATGCTTCAAGGCAGTTGAAGGAGCATGAGTGTAATTACCCTACCCATGATCTTGAGCTAGCAGCAGTTGTTTTAGCACTAAAAATCTGGGAAAAGTGCCATATTTTCACAGATCATAATAGTCTGAAGTATATTTTTGATCAGAAAGAGCTAAATCTGAGACAAAGGCGATGGCTAGAACTGATTAAAGATTATGATTGTACTATAGAGTATCATCCAGGTAAGGCCAATGTAGTAGCAGATGCATTAAGTAGGAAGTCAAGACTTCCGAAGAGTGCCTTGTGTGGTATTCGAGTAGCTTTGTTGAATGAGTTAAGAGGTTCCAAGGCAGTAGTAACTACAGAGGATTCAGGAAGTCTCTTAGCTCAATTTCAGGTTCGGTCTTCTCTAGTAACTGAGATTGTAAGAAGACAATCAGAAGACAGTAATTTACAGAAGAAGTTTGAGAAATCCAAGAAAGGCTTATAG

Coding sequence (CDS)

ATGACTCAACAAGAAGCGGAGGACGCACCAGACGTTATTACTGGTACGATTCTTATTTGTAATGTACCTGCAGATGTTTTATTTGATCCAGGTGCTACGCATTCCTTTGTTTCTAGTATATTTCTGACTAAGTTGAATAGGATGCTAGAGCCTTTATCTGAGGGGTTAGCTATACACACTCCAGTTGGTGACGTTTTACTTGTTAATGAGGTGTTACGTAATTGTGAAGTTTTAGTAGAAGGTATCAGTTTGCTAGTGGACTTGCTACCACTAGAGTTGCAGAGGAAAGAAGTGGTTTTCAGAAAACCAGGCTTTGCTGAAGTGGTTTTTAGAGGTGTGAGGAAGGCCGTTTCTAGAAGTTTAATCTCAGTTTTGAAAGCTGAGAAATTACTGAGGAAGGGTTGCACAGCGTTTCTTGCACACATCGTAGTAGTGCAGAGAGAAAAGCTAAAGCCAGAAGATGTTCCTGTGGTGAAAGAGTTTCTTGATGTATTTCCAAATGATCTGTCAGGTTTGCCACCTGATAGAGAGATTGAGTTCACCATTGAATTATTACCAGGAACAGCACCTATTTCACAGGCCCCGTATAGAATGGCTCCAAGCGAGCTAAAAGAATTGAAGATGCAGTTACAAGAACTAGTTGACAAGGGATACATCAGGCCTAGTGTTTTGCCATGGGGAGTACCAGTGCTATTTGTGAAAAAGAAAGATGGTACCCTCAGATTATGTATTGACTATAGACAGTTAAACAAGGTTACAATACGTAACAAGTATCCTTTACTACGCATCAATGACTTATTTGATCAACTAAGGGGAGCAGCGTTGTTCTCTAAGATTGACTTAAGGTCAGGATACCACCAGTTGAAGGTTAGAGAATCAGATATTGCTAAGACAACATTTAGAACGAGGTATGGGCATTATGAGTTTCGAGTTATGCCATTCGGTTTAACGAATGCGCCAGCGGTTTTCATGGATCTCATGAACAGGATCTTCCATCGGTATTTAGATAAGTTTGTGATTGTGTTCATTGATGATATATTAGTTTACTCGGTTGACAGAGAATTTCATGAGGAACATCTGAGGATTGTTCTACAGACTCTACTTTCAGCAAAAGGAGTTAGTGTCGATCCACAAAAAGTAGAAGCGGTTGTCAATTGGGAAAGACCAATTAGTGCGACAGAAGTACGTAGTTTCCTGGGTTTGGCAGGATACTATAGGCGTTTTATTGAGGACTTCTCTCGATTGGCATTGCCTTTGACCGCTTTGACAAGGAAGAATGTTAAGTTTGAGTGGTCAGATAAATGCGAGCAAAGTTTTCAGCAATTGAAGAAAAGACTAGTTACAGCACCTATTTTGGCACTTCCTGTAACAGGGAAGGACTATGTGATTTATTGTAATGCTTCAAGGCTAGGATTAGGTTGTGTGCTTATGCAAAATGGGAATGTAATAGCTTATGCTTCAAGGCAGTTGAAGGAGCATGAGTGTAATTACCCTACCCATGATCTTGAGCTAGCAGCAGTTGTTTTAGCACTAAAAATCTGGGAAAAGTGCCATATTTTCACAGATCATAATAGTCTGAAGTATATTTTTGATCAGAAAGAGCTAAATCTGAGACAAAGGCGATGGCTAGAACTGATTAAAGATTATGATTGTACTATAGAGTATCATCCAGGTAAGGCCAATGTAGTAGCAGATGCATTAAGTAGGAAGTCAAGACTTCCGAAGAGTGCCTTGTGTGGTATTCGAGTAGCTTTGTTGAATGAGTTAAGAGGTTCCAAGGCAGTAGTAACTACAGAGGATTCAGGAAGTCTCTTAGCTCAATTTCAGGTTCGGTCTTCTCTAGTAACTGAGATTGTAAGAAGACAATCAGAAGACAGTAATTTACAGAAGAAGTTTGAGAAATCCAAGAAAGGCTTATAG

Protein sequence

MTQQEAEDAPDVITGTILICNVPADVLFDPGATHSFVSSIFLTKLNRMLEPLSEGLAIHTPVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQRKEVVFRKPGFAEVVFRGVRKAVSRSLISVLKAEKLLRKGCTAFLAHIVVVQREKLKPEDVPVVKEFLDVFPNDLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKELKMQLQELVDKGYIRPSVLPWGVPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLLRINDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDKFVIVFIDDILVYSVDREFHEEHLRIVLQTLLSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQQLKKRLVTAPILALPVTGKDYVIYCNASRLGLGCVLMQNGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWEKCHIFTDHNSLKYIFDQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADALSRKSRLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGL
Homology
[Close]
BLAST of Cmc01g0012301 vs. NCBI nr
Match: KAA0042295.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 1208.7 bits (3126), Expect = 0.0e+00
Identity = 623/666 (93.54%), Postives = 629/666 (94.44%), Query Frame = 0 

Query: 1    MTQQEAEDAPDVITGTILICNVPADVLFDPGATHSFVSSIFLTKLNRMLEPLSEGLAIHT 60
            MTQQE EDAPDVITGTILICNVPADVLFDPGATHSFVSSIFLTKLNRMLEPLSEGLAI+T
Sbjct: 424  MTQQEVEDAPDVITGTILICNVPADVLFDPGATHSFVSSIFLTKLNRMLEPLSEGLAIYT 483

Query: 61   PVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ---------------------RKEVV 120
            PVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ                     RKEVV
Sbjct: 484  PVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQRLDVILGMDFLFAHYASMDCHRKEVV 543

Query: 121  FRKPGFAEVVFRGVRKAVSRSLISVLKAEKLLRKGCTAFLAHIVVVQREKLKPEDVPVVK 180
            FRKPGFAEVVFRG+RKAVSRSLISVLKAEKLLRKGCTAFLAHIVVVQREKLKPEDVPVVK
Sbjct: 544  FRKPGFAEVVFRGMRKAVSRSLISVLKAEKLLRKGCTAFLAHIVVVQREKLKPEDVPVVK 603

Query: 181  EFLDVFPNDLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKELKMQLQELVDKGYI 240
            EFLDVFPNDLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKELKMQLQELVDKGYI
Sbjct: 604  EFLDVFPNDLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKELKMQLQELVDKGYI 663

Query: 241  RPSVLPWGVPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLLRINDLFDQLRGAALFSKI 300
            RPSV PWG PVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPL RI DLFDQLRGA LFSKI
Sbjct: 664  RPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIYDLFDQLRGATLFSKI 723

Query: 301  DLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDKFV 360
            DLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLD+FV
Sbjct: 724  DLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFV 783

Query: 361  IVFIDDILVYSVDREFHEEHLRIVLQTLLSAKGVSVDPQKVEAVVNWERPISATEVRSFL 420
            IVFIDDILVYSVDRE HEEHLRIVLQTLLSAKGVSVDPQKVEAVVNWERPISATEVRSFL
Sbjct: 784  IVFIDDILVYSVDRESHEEHLRIVLQTLLSAKGVSVDPQKVEAVVNWERPISATEVRSFL 843

Query: 421  GLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQQLKKRLVTAPILALPVTGK 480
            GLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQ+LKKRLVT PILALPVTGK
Sbjct: 844  GLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTTPILALPVTGK 903

Query: 481  DYVIYCNASRLGLGCVLMQNGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIW----- 540
            D VIYC+ASRLGLGCVLMQ+GNVIAYASRQLKEHECNYPTHDLELAAVVLALKIW     
Sbjct: 904  DCVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLF 963

Query: 541  -EKCHIFTDHNSLKYIFDQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADALSRKSRL 600
             EKCHIFTDH SLKYIFDQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADALSRKSRL
Sbjct: 964  GEKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADALSRKSRL 1023

Query: 601  PKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFE 640
            PKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFE
Sbjct: 1024 PKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFE 1083

[Close]
BLAST of Cmc01g0012301 vs. NCBI nr
Match: TYK00844.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK00929.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 1199.5 bits (3102), Expect = 0.0e+00
Identity = 624/691 (90.30%), Postives = 632/691 (91.46%), Query Frame = 0 

Query: 1    MTQQEAEDAPDVITGTILICNVPADVLFDPGATHSFVSSIFLTKLNRMLEPLSEGLAIHT 60
            MTQQE EDAPDVITGTILICNVPADVLFDPGATHSFVSSIFLTKLNRMLEPLSEGLAI+T
Sbjct: 447  MTQQEVEDAPDVITGTILICNVPADVLFDPGATHSFVSSIFLTKLNRMLEPLSEGLAIYT 506

Query: 61   PVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ---------------------RKEVV 120
            PVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ                     RKEVV
Sbjct: 507  PVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQRLDVILGMDFLFAHYASMDCHRKEVV 566

Query: 121  FRKPGFAEVVFRGVRKAVSRSLISVLKAEKLLRKGCTAFLAHIVVVQREKLKPEDVPVVK 180
            FRKPGFAEVVFRG+RKAVSRSLISVLKAEKLLRKGCTAFLAHIVVVQREKLKPEDVPVVK
Sbjct: 567  FRKPGFAEVVFRGMRKAVSRSLISVLKAEKLLRKGCTAFLAHIVVVQREKLKPEDVPVVK 626

Query: 181  EFLDVFPNDLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKELKMQLQELVDKGYI 240
            EFLDVFP+DLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKELKMQLQELVDKGYI
Sbjct: 627  EFLDVFPDDLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKELKMQLQELVDKGYI 686

Query: 241  RPSVLPWGVPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLLRINDLFDQLRGAALFSKI 300
            RPSV PWG PVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPL RI+DLFDQLRGAALFSKI
Sbjct: 687  RPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKI 746

Query: 301  DLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDKFV 360
            DLRSGYHQLKVRESDIAKT FRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLD+FV
Sbjct: 747  DLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFV 806

Query: 361  IVFIDDILVYSVDREFHEEHLRIVLQTL-------------------------LSAKGVS 420
            IVFIDDILVYSVDRE HEEHLRIVLQTL                         +SAKGVS
Sbjct: 807  IVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVS 866

Query: 421  VDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDK 480
            VDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDK
Sbjct: 867  VDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDK 926

Query: 481  CEQSFQQLKKRLVTAPILALPVTGKDYVIYCNASRLGLGCVLMQNGNVIAYASRQLKEHE 540
            CEQSFQ+LKKRLVTAPILALPVTGKDYVIYC+ASRLGLGCVLMQNGNVIAYASRQLKEHE
Sbjct: 927  CEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQNGNVIAYASRQLKEHE 986

Query: 541  CNYPTHDLELAAVVLALKIW------EKCHIFTDHNSLKYIFDQKELNLRQRRWLELIKD 600
            CNYPTHDLELAAVVLALKIW      EKCHIFTDH SLKYIFDQKELNLRQRRWLELIKD
Sbjct: 987  CNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKD 1046

Query: 601  YDCTIEYHPGKANVVADALSRKSRLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF 640
            YDCTIEYHPGKANVVADALSRKSRLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF
Sbjct: 1047 YDCTIEYHPGKANVVADALSRKSRLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF 1106

[Close]
BLAST of Cmc01g0012301 vs. NCBI nr
Match: KAA0035455.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >KAA0046782.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK01987.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK03719.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK25877.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 1197.6 bits (3097), Expect = 0.0e+00
Identity = 623/691 (90.16%), Postives = 632/691 (91.46%), Query Frame = 0 

Query: 1    MTQQEAEDAPDVITGTILICNVPADVLFDPGATHSFVSSIFLTKLNRMLEPLSEGLAIHT 60
            MTQQE EDAPDVITGTILICNVPADVLFDPGATHSFVSSIFLTKLNRMLEPLSEGLAI+T
Sbjct: 447  MTQQEVEDAPDVITGTILICNVPADVLFDPGATHSFVSSIFLTKLNRMLEPLSEGLAIYT 506

Query: 61   PVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ---------------------RKEVV 120
            PVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ                     RKEVV
Sbjct: 507  PVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQRLDVILGMDFLFAHYASMDCHRKEVV 566

Query: 121  FRKPGFAEVVFRGVRKAVSRSLISVLKAEKLLRKGCTAFLAHIVVVQREKLKPEDVPVVK 180
            FRKPGFAEVVFRG+RKAVSRSLISVLKAEKLLRKGCTAFLAHIVVVQREKLKPEDVPVVK
Sbjct: 567  FRKPGFAEVVFRGMRKAVSRSLISVLKAEKLLRKGCTAFLAHIVVVQREKLKPEDVPVVK 626

Query: 181  EFLDVFPNDLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKELKMQLQELVDKGYI 240
            EFLDVFP+DLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKELKMQLQELVDKGYI
Sbjct: 627  EFLDVFPDDLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKELKMQLQELVDKGYI 686

Query: 241  RPSVLPWGVPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLLRINDLFDQLRGAALFSKI 300
            RPSV PWG PVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPL RI+DLFDQLRGAALFSKI
Sbjct: 687  RPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKI 746

Query: 301  DLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDKFV 360
            DLRSGYHQLKVRESDIAKT FRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLD+FV
Sbjct: 747  DLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFV 806

Query: 361  IVFIDDILVYSVDREFHEEHLRIVLQTL-------------------------LSAKGVS 420
            IVFIDDILVYSVDRE HEEHLRIVLQTL                         +SAKGVS
Sbjct: 807  IVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVS 866

Query: 421  VDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDK 480
            VDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDK
Sbjct: 867  VDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDK 926

Query: 481  CEQSFQQLKKRLVTAPILALPVTGKDYVIYCNASRLGLGCVLMQNGNVIAYASRQLKEHE 540
            CEQSFQ+LKKRLVTAPILALPVTGKDYVIYC+ASRLGLGCVLMQ+GNVIAYASRQLKEHE
Sbjct: 927  CEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHE 986

Query: 541  CNYPTHDLELAAVVLALKIW------EKCHIFTDHNSLKYIFDQKELNLRQRRWLELIKD 600
            CNYPTHDLELAAVVLALKIW      EKCHIFTDH SLKYIFDQKELNLRQRRWLELIKD
Sbjct: 987  CNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKD 1046

Query: 601  YDCTIEYHPGKANVVADALSRKSRLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF 640
            YDCTIEYHPGKANVVADALSRKSRLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF
Sbjct: 1047 YDCTIEYHPGKANVVADALSRKSRLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF 1106

[Close]
BLAST of Cmc01g0012301 vs. NCBI nr
Match: TYK06334.1 (putative polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 1197.6 bits (3097), Expect = 0.0e+00
Identity = 623/691 (90.16%), Postives = 632/691 (91.46%), Query Frame = 0 

Query: 1    MTQQEAEDAPDVITGTILICNVPADVLFDPGATHSFVSSIFLTKLNRMLEPLSEGLAIHT 60
            MTQQE EDAPDVITGTILICNVPADVLFDPGATHSFVSSIFLTKLNRMLEPLSEGLAI+T
Sbjct: 409  MTQQEVEDAPDVITGTILICNVPADVLFDPGATHSFVSSIFLTKLNRMLEPLSEGLAIYT 468

Query: 61   PVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ---------------------RKEVV 120
            PVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ                     RKEVV
Sbjct: 469  PVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQRLDVILGMDFLFAHYASMDCHRKEVV 528

Query: 121  FRKPGFAEVVFRGVRKAVSRSLISVLKAEKLLRKGCTAFLAHIVVVQREKLKPEDVPVVK 180
            FRKPGFAEVVFRG+RKAVSRSLISVLKAEKLLRKGCTAFLAHIVVVQREKLKPEDVPVVK
Sbjct: 529  FRKPGFAEVVFRGMRKAVSRSLISVLKAEKLLRKGCTAFLAHIVVVQREKLKPEDVPVVK 588

Query: 181  EFLDVFPNDLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKELKMQLQELVDKGYI 240
            EFLDVFP+DLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKELKMQLQELVDKGYI
Sbjct: 589  EFLDVFPDDLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKELKMQLQELVDKGYI 648

Query: 241  RPSVLPWGVPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLLRINDLFDQLRGAALFSKI 300
            RPSV PWG PVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPL RI+DLFDQLRGAALFSKI
Sbjct: 649  RPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKI 708

Query: 301  DLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDKFV 360
            DLRSGYHQLKVRESDIAKT FRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLD+FV
Sbjct: 709  DLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFV 768

Query: 361  IVFIDDILVYSVDREFHEEHLRIVLQTL-------------------------LSAKGVS 420
            IVFIDDILVYSVDRE HEEHLRIVLQTL                         +SAKGVS
Sbjct: 769  IVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVS 828

Query: 421  VDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDK 480
            VDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDK
Sbjct: 829  VDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDK 888

Query: 481  CEQSFQQLKKRLVTAPILALPVTGKDYVIYCNASRLGLGCVLMQNGNVIAYASRQLKEHE 540
            CEQSFQ+LKKRLVTAPILALPVTGKDYVIYC+ASRLGLGCVLMQNGNVIAYASRQLKEHE
Sbjct: 889  CEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQNGNVIAYASRQLKEHE 948

Query: 541  CNYPTHDLELAAVVLALKIW------EKCHIFTDHNSLKYIFDQKELNLRQRRWLELIKD 600
            CNYPTHDLELAAVVLALKIW      EKCHIFTDH SLKYIFDQKELNLRQRRWLELIKD
Sbjct: 949  CNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKD 1008

Query: 601  YDCTIEYHPGKANVVADALSRKSRLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF 640
            YDCTIEYHPGKANVVADALSRKSRLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF
Sbjct: 1009 YDCTIEYHPGKANVVADALSRKSRLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF 1068

[Close]
BLAST of Cmc01g0012301 vs. NCBI nr
Match: KAA0056684.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 1197.6 bits (3097), Expect = 0.0e+00
Identity = 623/691 (90.16%), Postives = 632/691 (91.46%), Query Frame = 0 

Query: 1    MTQQEAEDAPDVITGTILICNVPADVLFDPGATHSFVSSIFLTKLNRMLEPLSEGLAIHT 60
            MTQQE EDAPDVITGTILICNVPADVLFDPGATHSFVSSIFLTKLNRMLEPLSEGLAI+T
Sbjct: 658  MTQQEVEDAPDVITGTILICNVPADVLFDPGATHSFVSSIFLTKLNRMLEPLSEGLAIYT 717

Query: 61   PVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ---------------------RKEVV 120
            PVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ                     RKEVV
Sbjct: 718  PVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQRLDVILGMDFLFAHYASMDCHRKEVV 777

Query: 121  FRKPGFAEVVFRGVRKAVSRSLISVLKAEKLLRKGCTAFLAHIVVVQREKLKPEDVPVVK 180
            FRKPGFAEVVFRG+RKAVSRSLISVLKAEKLLRKGCTAFLAHIVVVQREKLKPEDVPVVK
Sbjct: 778  FRKPGFAEVVFRGMRKAVSRSLISVLKAEKLLRKGCTAFLAHIVVVQREKLKPEDVPVVK 837

Query: 181  EFLDVFPNDLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKELKMQLQELVDKGYI 240
            EFLDVFP+DLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKELKMQLQELVDKGYI
Sbjct: 838  EFLDVFPDDLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKELKMQLQELVDKGYI 897

Query: 241  RPSVLPWGVPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLLRINDLFDQLRGAALFSKI 300
            RPSV PWG PVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPL RI+DLFDQLRGAALFSKI
Sbjct: 898  RPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKI 957

Query: 301  DLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDKFV 360
            DLRSGYHQLKVRESDIAKT FRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLD+FV
Sbjct: 958  DLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFV 1017

Query: 361  IVFIDDILVYSVDREFHEEHLRIVLQTL-------------------------LSAKGVS 420
            IVFIDDILVYSVDRE HEEHLRIVLQTL                         +SAKGVS
Sbjct: 1018 IVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVS 1077

Query: 421  VDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDK 480
            VDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDK
Sbjct: 1078 VDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDK 1137

Query: 481  CEQSFQQLKKRLVTAPILALPVTGKDYVIYCNASRLGLGCVLMQNGNVIAYASRQLKEHE 540
            CEQSFQ+LKKRLVTAPILALPVTGKDYVIYC+ASRLGLGCVLMQ+GNVIAYASRQLKEHE
Sbjct: 1138 CEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHE 1197

Query: 541  CNYPTHDLELAAVVLALKIW------EKCHIFTDHNSLKYIFDQKELNLRQRRWLELIKD 600
            CNYPTHDLELAAVVLALKIW      EKCHIFTDH SLKYIFDQKELNLRQRRWLELIKD
Sbjct: 1198 CNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKD 1257

Query: 601  YDCTIEYHPGKANVVADALSRKSRLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF 640
            YDCTIEYHPGKANVVADALSRKSRLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF
Sbjct: 1258 YDCTIEYHPGKANVVADALSRKSRLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF 1317

[Close]
BLAST of Cmc01g0012301 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 4.0e-71
Identity = 165/463 (35.64%), Postives = 246/463 (53.13%), Query Frame = 0 

Query: 160 EFLDVFPNDLSGLPPDREIEFTIELLPGTA-PISQAPYRMAPSELKELKMQLQELVDKGY 219
           EF  +F   LSG+  +  ++   E+   T  PI    Y    +   E++ Q+ EL+  G 
Sbjct: 94  EFPRIFEPPLSGMSVETAVK--AEIRTNTQDPIYAKSYPYPVNMRGEVERQIDELLQDGI 153

Query: 220 IRPSVLPWGVPVLFVKKK-----DGTLRLCIDYRQLNKVTIRNKYPLLRINDLFDQLRGA 279
           IRPS  P+  P+  V KK     +   R+ +D+++LN VTI + YP+  IN     L  A
Sbjct: 154 IRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPIPDINATLASLGNA 213

Query: 280 ALFSKIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHR 339
             F+ +DL SG+HQ+ ++ESDI KT F T  G YEF  +PFGL NAPA+F  +++ I   
Sbjct: 214 KYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDILRE 273

Query: 340 YLDKFVIVFIDDILVYSVDREFHEEHLRIVLQTL-------------------------L 399
           ++ K   V+IDDI+V+S D + H ++LR+VL +L                         +
Sbjct: 274 HIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVEFLGYIV 333

Query: 400 SAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLTALTR---K 459
           +A G+  DP+KV A+     P S  E++ FLG+  YYR+FI+D++++A PLT LTR    
Sbjct: 334 TADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYA 393

Query: 460 NVKFEWSDKCE--------QSFQQLKKRLVTAPILALPVTGKDYVIYCNASRLGLGCVLM 519
           N+K   S K          QSF  LK  L ++ ILA P   K + +  +AS   +G VL 
Sbjct: 394 NIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASNWAIGAVLS 453

Query: 520 QN----GNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWE-------KCHIFTDHNSL 570
           Q+       IAY SR L + E NY T + E+ A++ +L              ++TDH  L
Sbjct: 454 QDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYGAGTIKVYTDHQPL 513

[Close]
BLAST of Cmc01g0012301 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 5.2e-71
Identity = 151/419 (36.04%), Postives = 236/419 (56.32%), Query Frame = 0 

Query: 189 APISQAPYRMAPSELKELKMQLQELVDKGYIRPSVLPWGVPVLFVKKKD-----GTLRLC 248
           +PI    Y +A +   E++ Q+QE++++G IR S  P+  P   V KK         R+ 
Sbjct: 205 SPIYSKQYPLAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVV 264

Query: 249 IDYRQLNKVTIRNKYPLLRINDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTTFRTR 308
           IDYR+LN++TI ++YP+  ++++  +L     F+ IDL  G+HQ+++ E  I+KT F T+
Sbjct: 265 IDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTK 324

Query: 309 YGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDKFVIVFIDDILVYSVDREFHEEHLRIV 368
            GHYE+  MPFGL NAPA F   MN I    L+K  +V++DDI+++S     H   +++V
Sbjct: 325 SGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLV 384

Query: 369 LQTLLSAK-------------------------GVSVDPQKVEAVVNWERPISATEVRSF 428
              L  A                          G+  +P KV+A+V++  P    E+R+F
Sbjct: 385 FTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAF 444

Query: 429 LGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCE--QSFQQLKKRLVTAPILALPV 488
           LGL GYYR+FI +++ +A P+T+  +K  K + + K E  ++F++LK  ++  PIL LP 
Sbjct: 445 LGLTGYYRKFIPNYADIAKPMTSCLKKRTKID-TQKLEYIEAFEKLKALIIRDPILQLPD 504

Query: 489 TGKDYVIYCNASRLGLGCVLMQNGNVIAYASRQLKEHECNYPTHDLELAAVVLALK---- 548
             K +V+  +AS L LG VL QNG+ I++ SR L +HE NY   + EL A+V A K    
Sbjct: 505 FEKKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRH 564

Query: 549 --IWEKCHIFTDHNSLKYIFDQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADALSR 570
             +  +  I +DH  L+++ + KE   +  RW   + +Y   I+Y  GK N VADALSR
Sbjct: 565 YLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSVADALSR 622

[Close]
BLAST of Cmc01g0012301 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 9.8e-70
Identity = 140/403 (34.74%), Postives = 233/403 (57.82%), Query Frame = 0 

Query: 204 KELKMQLQELVDKGYIRPSVLPWGVPVLFVKKKDGT-----LRLCIDYRQLNKVTIRNKY 263
           +E++ Q+Q+++++G IR S  P+  P+  V KK         R+ IDYR+LN++T+ +++
Sbjct: 221 QEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRH 280

Query: 264 PLLRINDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVMPFGLTN 323
           P+  ++++  +L     F+ IDL  G+HQ+++    ++KT F T++GHYE+  MPFGL N
Sbjct: 281 PIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKN 340

Query: 324 APAVFMDLMNRIFHRYLDKFVIVFIDDILVYSVDREFHEEHLRIVLQTL----------- 383
           APA F   MN I    L+K  +V++DDI+V+S   + H + L +V + L           
Sbjct: 341 APATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDK 400

Query: 384 --------------LSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDFS 443
                         L+  G+  +P+K+EA+  +  P    E+++FLGL GYYR+FI +F+
Sbjct: 401 CEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFA 460

Query: 444 RLALPLTALTRKNVKFEWSD-KCEQSFQQLKKRLVTAPILALPVTGKDYVIYCNASRLGL 503
            +A P+T   +KN+K + ++ + + +F++LK  +   PIL +P   K + +  +AS + L
Sbjct: 461 DIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVAL 520

Query: 504 GCVLMQNGNVIAYASRQLKEHECNYPTHDLELAAVVLALK------IWEKCHIFTDHNSL 563
           G VL Q+G+ ++Y SR L EHE NY T + EL A+V A K      +     I +DH  L
Sbjct: 521 GAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPL 580

Query: 564 KYIFDQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADALSR 570
            +++  K+ N +  RW   + ++D  I+Y  GK N VADALSR
Sbjct: 581 SWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADALSR 623

[Close]
BLAST of Cmc01g0012301 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 257.7 bits (657), Expect = 3.5e-67
Identity = 159/452 (35.18%), Postives = 245/452 (54.20%), Query Frame = 0 

Query: 159  KEFLDVFPNDLSGLPPDRE---IEFTIELLPGTAPISQAPYRMAPSELKELKMQLQELVD 218
            +++ ++  NDL   P D     ++  IE+ PG       PY +     +E+   +Q+L+D
Sbjct: 588  QKYREIIRNDLPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLD 647

Query: 219  KGYIRPSVLPWGVPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLLRINDLFDQLRGAAL 278
              +I PS  P   PV+ V KKDGT RLC+DYR LNK TI + +PL RI++L  ++  A +
Sbjct: 648  NKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQI 707

Query: 279  FSKIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYL 338
            F+ +DL SGYHQ+ +   D  KT F T  G YE+ VMPFGL NAP+ F   M   F    
Sbjct: 708  FTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL- 767

Query: 339  DKFVIVFIDDILVYSVDREFHEEHLRIVLQTLLSAK------------------GVSVDP 398
             +FV V++DDIL++S   E H +HL  VL+ L +                    G S+  
Sbjct: 768  -RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGI 827

Query: 399  QKV-------EAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFE 458
            QK+        A+ ++  P +  + + FLG+  YYRRFI + S++A P+        K +
Sbjct: 828  QKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICD--KSQ 887

Query: 459  WSDKCEQSFQQLKKRLVTAPILALPVTGK-DYVIYCNASRLGLGCVLMQNGN------VI 518
            W++K +++ ++LK  L  +P+L +P   K +Y +  +AS+ G+G VL +  N      V+
Sbjct: 888  WTEKQDKAIEKLKAALCNSPVL-VPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVV 947

Query: 519  AYASRQLKEHECNYPTHDLELAAVVLALKIW------EKCHIFTDHNSLKYIFDQKELNL 570
             Y S+ L+  + NYP  +LEL  ++ AL  +      +   + TDH SL  + ++ E   
Sbjct: 948  GYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPAR 1007

[Close]
BLAST of Cmc01g0012301 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 256.9 bits (655), Expect = 6.0e-67
Identity = 159/452 (35.18%), Postives = 244/452 (53.98%), Query Frame = 0 

Query: 159  KEFLDVFPNDLSGLPPDRE---IEFTIELLPGTAPISQAPYRMAPSELKELKMQLQELVD 218
            +++ ++  NDL   P D     ++  IE+ PG       PY +     +E+   +Q+L+D
Sbjct: 562  QKYREIIRNDLPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLD 621

Query: 219  KGYIRPSVLPWGVPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLLRINDLFDQLRGAAL 278
              +I PS  P   PV+ V KKDGT RLC+DYR LNK TI + +PL RI++L  ++  A +
Sbjct: 622  NKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQI 681

Query: 279  FSKIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYL 338
            F+ +DL SGYHQ+ +   D  KT F T  G YE+ VMPFGL NAP+ F   M   F    
Sbjct: 682  FTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL- 741

Query: 339  DKFVIVFIDDILVYSVDREFHEEHLRIVLQTLLSAK------------------GVSVDP 398
             +FV V++DDIL++S   E H +HL  VL+ L +                    G S+  
Sbjct: 742  -RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGI 801

Query: 399  QKV-------EAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFE 458
            QK+        A+ ++  P +  + + FLG+  YYRRFI + S++A P+        K +
Sbjct: 802  QKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICD--KSQ 861

Query: 459  WSDKCEQSFQQLKKRLVTAPILALPVTGK-DYVIYCNASRLGLGCVLMQNGN------VI 518
            W++K +++  +LK  L  +P+L +P   K +Y +  +AS+ G+G VL +  N      V+
Sbjct: 862  WTEKQDKAIDKLKDALCNSPVL-VPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVV 921

Query: 519  AYASRQLKEHECNYPTHDLELAAVVLALKIW------EKCHIFTDHNSLKYIFDQKELNL 570
             Y S+ L+  + NYP  +LEL  ++ AL  +      +   + TDH SL  + ++ E   
Sbjct: 922  GYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPAR 981

[Close]
BLAST of Cmc01g0012301 vs. ExPASy TrEMBL
Match: A0A5A7TLH7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold824G00900 PE=4 SV=1)

HSP 1 Score: 1208.7 bits (3126), Expect = 0.0e+00
Identity = 623/666 (93.54%), Postives = 629/666 (94.44%), Query Frame = 0 

Query: 1    MTQQEAEDAPDVITGTILICNVPADVLFDPGATHSFVSSIFLTKLNRMLEPLSEGLAIHT 60
            MTQQE EDAPDVITGTILICNVPADVLFDPGATHSFVSSIFLTKLNRMLEPLSEGLAI+T
Sbjct: 424  MTQQEVEDAPDVITGTILICNVPADVLFDPGATHSFVSSIFLTKLNRMLEPLSEGLAIYT 483

Query: 61   PVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ---------------------RKEVV 120
            PVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ                     RKEVV
Sbjct: 484  PVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQRLDVILGMDFLFAHYASMDCHRKEVV 543

Query: 121  FRKPGFAEVVFRGVRKAVSRSLISVLKAEKLLRKGCTAFLAHIVVVQREKLKPEDVPVVK 180
            FRKPGFAEVVFRG+RKAVSRSLISVLKAEKLLRKGCTAFLAHIVVVQREKLKPEDVPVVK
Sbjct: 544  FRKPGFAEVVFRGMRKAVSRSLISVLKAEKLLRKGCTAFLAHIVVVQREKLKPEDVPVVK 603

Query: 181  EFLDVFPNDLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKELKMQLQELVDKGYI 240
            EFLDVFPNDLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKELKMQLQELVDKGYI
Sbjct: 604  EFLDVFPNDLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKELKMQLQELVDKGYI 663

Query: 241  RPSVLPWGVPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLLRINDLFDQLRGAALFSKI 300
            RPSV PWG PVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPL RI DLFDQLRGA LFSKI
Sbjct: 664  RPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIYDLFDQLRGATLFSKI 723

Query: 301  DLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDKFV 360
            DLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLD+FV
Sbjct: 724  DLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFV 783

Query: 361  IVFIDDILVYSVDREFHEEHLRIVLQTLLSAKGVSVDPQKVEAVVNWERPISATEVRSFL 420
            IVFIDDILVYSVDRE HEEHLRIVLQTLLSAKGVSVDPQKVEAVVNWERPISATEVRSFL
Sbjct: 784  IVFIDDILVYSVDRESHEEHLRIVLQTLLSAKGVSVDPQKVEAVVNWERPISATEVRSFL 843

Query: 421  GLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQQLKKRLVTAPILALPVTGK 480
            GLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQ+LKKRLVT PILALPVTGK
Sbjct: 844  GLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTTPILALPVTGK 903

Query: 481  DYVIYCNASRLGLGCVLMQNGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIW----- 540
            D VIYC+ASRLGLGCVLMQ+GNVIAYASRQLKEHECNYPTHDLELAAVVLALKIW     
Sbjct: 904  DCVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLF 963

Query: 541  -EKCHIFTDHNSLKYIFDQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADALSRKSRL 600
             EKCHIFTDH SLKYIFDQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADALSRKSRL
Sbjct: 964  GEKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADALSRKSRL 1023

Query: 601  PKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFE 640
            PKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFE
Sbjct: 1024 PKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFE 1083

[Close]
BLAST of Cmc01g0012301 vs. ExPASy TrEMBL
Match: A0A5D3BS67 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G00050 PE=4 SV=1)

HSP 1 Score: 1199.5 bits (3102), Expect = 0.0e+00
Identity = 624/691 (90.30%), Postives = 632/691 (91.46%), Query Frame = 0 

Query: 1    MTQQEAEDAPDVITGTILICNVPADVLFDPGATHSFVSSIFLTKLNRMLEPLSEGLAIHT 60
            MTQQE EDAPDVITGTILICNVPADVLFDPGATHSFVSSIFLTKLNRMLEPLSEGLAI+T
Sbjct: 447  MTQQEVEDAPDVITGTILICNVPADVLFDPGATHSFVSSIFLTKLNRMLEPLSEGLAIYT 506

Query: 61   PVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ---------------------RKEVV 120
            PVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ                     RKEVV
Sbjct: 507  PVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQRLDVILGMDFLFAHYASMDCHRKEVV 566

Query: 121  FRKPGFAEVVFRGVRKAVSRSLISVLKAEKLLRKGCTAFLAHIVVVQREKLKPEDVPVVK 180
            FRKPGFAEVVFRG+RKAVSRSLISVLKAEKLLRKGCTAFLAHIVVVQREKLKPEDVPVVK
Sbjct: 567  FRKPGFAEVVFRGMRKAVSRSLISVLKAEKLLRKGCTAFLAHIVVVQREKLKPEDVPVVK 626

Query: 181  EFLDVFPNDLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKELKMQLQELVDKGYI 240
            EFLDVFP+DLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKELKMQLQELVDKGYI
Sbjct: 627  EFLDVFPDDLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKELKMQLQELVDKGYI 686

Query: 241  RPSVLPWGVPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLLRINDLFDQLRGAALFSKI 300
            RPSV PWG PVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPL RI+DLFDQLRGAALFSKI
Sbjct: 687  RPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKI 746

Query: 301  DLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDKFV 360
            DLRSGYHQLKVRESDIAKT FRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLD+FV
Sbjct: 747  DLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFV 806

Query: 361  IVFIDDILVYSVDREFHEEHLRIVLQTL-------------------------LSAKGVS 420
            IVFIDDILVYSVDRE HEEHLRIVLQTL                         +SAKGVS
Sbjct: 807  IVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVS 866

Query: 421  VDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDK 480
            VDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDK
Sbjct: 867  VDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDK 926

Query: 481  CEQSFQQLKKRLVTAPILALPVTGKDYVIYCNASRLGLGCVLMQNGNVIAYASRQLKEHE 540
            CEQSFQ+LKKRLVTAPILALPVTGKDYVIYC+ASRLGLGCVLMQNGNVIAYASRQLKEHE
Sbjct: 927  CEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQNGNVIAYASRQLKEHE 986

Query: 541  CNYPTHDLELAAVVLALKIW------EKCHIFTDHNSLKYIFDQKELNLRQRRWLELIKD 600
            CNYPTHDLELAAVVLALKIW      EKCHIFTDH SLKYIFDQKELNLRQRRWLELIKD
Sbjct: 987  CNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKD 1046

Query: 601  YDCTIEYHPGKANVVADALSRKSRLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF 640
            YDCTIEYHPGKANVVADALSRKSRLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF
Sbjct: 1047 YDCTIEYHPGKANVVADALSRKSRLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF 1106

[Close]
BLAST of Cmc01g0012301 vs. ExPASy TrEMBL
Match: A0A5A7U2V7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00630 PE=4 SV=1)

HSP 1 Score: 1197.6 bits (3097), Expect = 0.0e+00
Identity = 623/691 (90.16%), Postives = 632/691 (91.46%), Query Frame = 0 

Query: 1    MTQQEAEDAPDVITGTILICNVPADVLFDPGATHSFVSSIFLTKLNRMLEPLSEGLAIHT 60
            MTQQE EDAPDVITGTILICNVPADVLFDPGATHSFVSSIFLTKLNRMLEPLSEGLAI+T
Sbjct: 409  MTQQEVEDAPDVITGTILICNVPADVLFDPGATHSFVSSIFLTKLNRMLEPLSEGLAIYT 468

Query: 61   PVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ---------------------RKEVV 120
            PVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ                     RKEVV
Sbjct: 469  PVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQRLDVILGMDFLFAHYASMDCHRKEVV 528

Query: 121  FRKPGFAEVVFRGVRKAVSRSLISVLKAEKLLRKGCTAFLAHIVVVQREKLKPEDVPVVK 180
            FRKPGFAEVVFRG+RKAVSRSLISVLKAEKLLRKGCTAFLAHIVVVQREKLKPEDVPVVK
Sbjct: 529  FRKPGFAEVVFRGMRKAVSRSLISVLKAEKLLRKGCTAFLAHIVVVQREKLKPEDVPVVK 588

Query: 181  EFLDVFPNDLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKELKMQLQELVDKGYI 240
            EFLDVFP+DLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKELKMQLQELVDKGYI
Sbjct: 589  EFLDVFPDDLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKELKMQLQELVDKGYI 648

Query: 241  RPSVLPWGVPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLLRINDLFDQLRGAALFSKI 300
            RPSV PWG PVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPL RI+DLFDQLRGAALFSKI
Sbjct: 649  RPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKI 708

Query: 301  DLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDKFV 360
            DLRSGYHQLKVRESDIAKT FRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLD+FV
Sbjct: 709  DLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFV 768

Query: 361  IVFIDDILVYSVDREFHEEHLRIVLQTL-------------------------LSAKGVS 420
            IVFIDDILVYSVDRE HEEHLRIVLQTL                         +SAKGVS
Sbjct: 769  IVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVS 828

Query: 421  VDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDK 480
            VDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDK
Sbjct: 829  VDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDK 888

Query: 481  CEQSFQQLKKRLVTAPILALPVTGKDYVIYCNASRLGLGCVLMQNGNVIAYASRQLKEHE 540
            CEQSFQ+LKKRLVTAPILALPVTGKDYVIYC+ASRLGLGCVLMQ+GNVIAYASRQLKEHE
Sbjct: 889  CEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHE 948

Query: 541  CNYPTHDLELAAVVLALKIW------EKCHIFTDHNSLKYIFDQKELNLRQRRWLELIKD 600
            CNYPTHDLELAAVVLALKIW      EKCHIFTDH SLKYIFDQKELNLRQRRWLELIKD
Sbjct: 949  CNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKD 1008

Query: 601  YDCTIEYHPGKANVVADALSRKSRLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF 640
            YDCTIEYHPGKANVVADALSRKSRLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF
Sbjct: 1009 YDCTIEYHPGKANVVADALSRKSRLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF 1068

[Close]
BLAST of Cmc01g0012301 vs. ExPASy TrEMBL
Match: A0A5D3BHI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold115G00450 PE=4 SV=1)

HSP 1 Score: 1197.6 bits (3097), Expect = 0.0e+00
Identity = 623/691 (90.16%), Postives = 632/691 (91.46%), Query Frame = 0 

Query: 1    MTQQEAEDAPDVITGTILICNVPADVLFDPGATHSFVSSIFLTKLNRMLEPLSEGLAIHT 60
            MTQQE EDAPDVITGTILICNVPADVLFDPGATHSFVSSIFLTKLNRMLEPLSEGLAI+T
Sbjct: 447  MTQQEVEDAPDVITGTILICNVPADVLFDPGATHSFVSSIFLTKLNRMLEPLSEGLAIYT 506

Query: 61   PVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ---------------------RKEVV 120
            PVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ                     RKEVV
Sbjct: 507  PVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQRLDVILGMDFLFAHYASMDCHRKEVV 566

Query: 121  FRKPGFAEVVFRGVRKAVSRSLISVLKAEKLLRKGCTAFLAHIVVVQREKLKPEDVPVVK 180
            FRKPGFAEVVFRG+RKAVSRSLISVLKAEKLLRKGCTAFLAHIVVVQREKLKPEDVPVVK
Sbjct: 567  FRKPGFAEVVFRGMRKAVSRSLISVLKAEKLLRKGCTAFLAHIVVVQREKLKPEDVPVVK 626

Query: 181  EFLDVFPNDLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKELKMQLQELVDKGYI 240
            EFLDVFP+DLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKELKMQLQELVDKGYI
Sbjct: 627  EFLDVFPDDLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKELKMQLQELVDKGYI 686

Query: 241  RPSVLPWGVPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLLRINDLFDQLRGAALFSKI 300
            RPSV PWG PVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPL RI+DLFDQLRGAALFSKI
Sbjct: 687  RPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKI 746

Query: 301  DLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDKFV 360
            DLRSGYHQLKVRESDIAKT FRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLD+FV
Sbjct: 747  DLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFV 806

Query: 361  IVFIDDILVYSVDREFHEEHLRIVLQTL-------------------------LSAKGVS 420
            IVFIDDILVYSVDRE HEEHLRIVLQTL                         +SAKGVS
Sbjct: 807  IVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVS 866

Query: 421  VDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDK 480
            VDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDK
Sbjct: 867  VDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDK 926

Query: 481  CEQSFQQLKKRLVTAPILALPVTGKDYVIYCNASRLGLGCVLMQNGNVIAYASRQLKEHE 540
            CEQSFQ+LKKRLVTAPILALPVTGKDYVIYC+ASRLGLGCVLMQ+GNVIAYASRQLKEHE
Sbjct: 927  CEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHE 986

Query: 541  CNYPTHDLELAAVVLALKIW------EKCHIFTDHNSLKYIFDQKELNLRQRRWLELIKD 600
            CNYPTHDLELAAVVLALKIW      EKCHIFTDH SLKYIFDQKELNLRQRRWLELIKD
Sbjct: 987  CNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKD 1046

Query: 601  YDCTIEYHPGKANVVADALSRKSRLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF 640
            YDCTIEYHPGKANVVADALSRKSRLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF
Sbjct: 1047 YDCTIEYHPGKANVVADALSRKSRLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF 1106

[Close]
BLAST of Cmc01g0012301 vs. ExPASy TrEMBL
Match: A0A5A7T1Y5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold436G00980 PE=4 SV=1)

HSP 1 Score: 1197.6 bits (3097), Expect = 0.0e+00
Identity = 623/691 (90.16%), Postives = 632/691 (91.46%), Query Frame = 0 

Query: 1    MTQQEAEDAPDVITGTILICNVPADVLFDPGATHSFVSSIFLTKLNRMLEPLSEGLAIHT 60
            MTQQE EDAPDVITGTILICNVPADVLFDPGATHSFVSSIFLTKLNRMLEPLSEGLAI+T
Sbjct: 447  MTQQEVEDAPDVITGTILICNVPADVLFDPGATHSFVSSIFLTKLNRMLEPLSEGLAIYT 506

Query: 61   PVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ---------------------RKEVV 120
            PVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ                     RKEVV
Sbjct: 507  PVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQRLDVILGMDFLFAHYASMDCHRKEVV 566

Query: 121  FRKPGFAEVVFRGVRKAVSRSLISVLKAEKLLRKGCTAFLAHIVVVQREKLKPEDVPVVK 180
            FRKPGFAEVVFRG+RKAVSRSLISVLKAEKLLRKGCTAFLAHIVVVQREKLKPEDVPVVK
Sbjct: 567  FRKPGFAEVVFRGMRKAVSRSLISVLKAEKLLRKGCTAFLAHIVVVQREKLKPEDVPVVK 626

Query: 181  EFLDVFPNDLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKELKMQLQELVDKGYI 240
            EFLDVFP+DLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKELKMQLQELVDKGYI
Sbjct: 627  EFLDVFPDDLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKELKMQLQELVDKGYI 686

Query: 241  RPSVLPWGVPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLLRINDLFDQLRGAALFSKI 300
            RPSV PWG PVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPL RI+DLFDQLRGAALFSKI
Sbjct: 687  RPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKI 746

Query: 301  DLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDKFV 360
            DLRSGYHQLKVRESDIAKT FRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLD+FV
Sbjct: 747  DLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFV 806

Query: 361  IVFIDDILVYSVDREFHEEHLRIVLQTL-------------------------LSAKGVS 420
            IVFIDDILVYSVDRE HEEHLRIVLQTL                         +SAKGVS
Sbjct: 807  IVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVS 866

Query: 421  VDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDK 480
            VDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDK
Sbjct: 867  VDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDK 926

Query: 481  CEQSFQQLKKRLVTAPILALPVTGKDYVIYCNASRLGLGCVLMQNGNVIAYASRQLKEHE 540
            CEQSFQ+LKKRLVTAPILALPVTGKDYVIYC+ASRLGLGCVLMQ+GNVIAYASRQLKEHE
Sbjct: 927  CEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHE 986

Query: 541  CNYPTHDLELAAVVLALKIW------EKCHIFTDHNSLKYIFDQKELNLRQRRWLELIKD 600
            CNYPTHDLELAAVVLALKIW      EKCHIFTDH SLKYIFDQKELNLRQRRWLELIKD
Sbjct: 987  CNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKD 1046

Query: 601  YDCTIEYHPGKANVVADALSRKSRLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF 640
            YDCTIEYHPGKANVVADALSRKSRLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF
Sbjct: 1047 YDCTIEYHPGKANVVADALSRKSRLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF 1106

[Close]
BLAST of Cmc01g0012301 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 94.0 bits (232), Expect = 4.8e-19
Identity = 41/89 (46.07%), Postives = 62/89 (69.66%), Query Frame = 0 

Query: 367 LLSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKN 426
           ++S +GVS DP K+EA+V W  P + TE+R FLGL GYYRRF++++ ++  PLT L +KN
Sbjct: 38  IISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKN 97

Query: 427 VKFEWSDKCEQSFQQLKKRLVTAPILALP 456
              +W++    +F+ LK  + T P+LALP
Sbjct: 98  -SLKWTEMAALAFKALKGAVTTLPVLALP 125

The following BLAST results are available for this feature:
BLAST of Cmc01g0012301 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0042295.10.0e+0093.54DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
TYK00844.10.0e+0090.30DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK00929.1 D... [more]
KAA0035455.10.0e+0090.16DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >KAA0046782.1... [more]
TYK06334.10.0e+0090.16putative polyprotein [Cucumis melo var. makuwa][more]
KAA0056684.10.0e+0090.16DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
BLAST of Cmc01g0012301 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8I7P94.0e-7135.64Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast... [more]
P208255.2e-7136.04Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste... [more]
P043239.8e-7034.74Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast... [more]
Q7LHG53.5e-6735.18Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
Q993156.0e-6735.18Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
BLAST of Cmc01g0012301 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TLH70.0e+0093.54Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82... [more]
A0A5D3BS670.0e+0090.30Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold50... [more]
A0A5A7U2V70.0e+0090.16Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37... [more]
A0A5D3BHI10.0e+0090.16Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11... [more]
A0A5A7T1Y50.0e+0090.16Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold43... [more]
BLAST of Cmc01g0012301 vs. TAIR 10
Match NameE-valueIdentityDescription
ATMG00860.14.8e-1946.07DNA/RNA polymerases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.10.10HIV Type 1 Reverse Transcriptase, subunit A, domain 1coord: 178..318
e-value: 3.6E-77
score: 260.4
NoneNo IPR availablePFAMPF08284RVP_2coord: 2..100
e-value: 3.4E-25
score: 88.4
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 95..308
coord: 371..571
NoneNo IPR availablePANTHERPTHR24559:SF383DNA/RNA POLYMERASES SUPERFAMILY PROTEINcoord: 95..308
NoneNo IPR availablePANTHERPTHR24559:SF383DNA/RNA POLYMERASES SUPERFAMILY PROTEINcoord: 371..571
NoneNo IPR availableCDDcd09274RNase_HI_RT_Ty3coord: 462..570
e-value: 1.51692E-48
score: 163.818
NoneNo IPR availableCDDcd00303retropepsin_likecoord: 16..77
e-value: 9.37157E-8
score: 48.1016
NoneNo IPR availableCDDcd01647RT_LTRcoord: 217..379
e-value: 1.62151E-73
score: 232.101
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 233..385
e-value: 2.8E-24
score: 85.9
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 214..403
score: 14.410347
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 258..382
e-value: 3.6E-77
score: 260.4
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 383..461
e-value: 3.1E-31
score: 109.2
IPR041577Reverse transcriptase/retrotransposon-derived protein, RNase H-like domainPFAMPF17919RT_RNaseH_2coord: 431..516
e-value: 1.3E-25
score: 89.3
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 157..555

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc01g0012301.1Cmc01g0012301.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity
molecular_function GO:0008270 zinc ion binding