Cmc01g0012061 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0012061
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr01: 7811658 .. 7812038 (-)
RNA-Seq Expression	Cmc01g0012061
Synteny	Cmc01g0012061

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCCCGCAGAGCTGAAAGAACTGAAGGTGCAGTTACAAGAATTGCTTGATAAGGGATTCATTCGACCGAGCGTGTCACCTTGGGGTGCGCCAATTTTATTTGTTAAGAAGAAGGATGGATCGATGCGTCTATGCATTGAATACAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGATCTATTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGATTGATCTTCGGTCGGGATATCATCTACTGAGGATTAAGGATGGTGATGTACCGAAGACAGCATTTCGTTCCAGATATGGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGGCAGTTTTATAG

mRNA sequence

ATGGCCCCCGCAGAGCTGAAAGAACTGAAGGTGCAGTTACAAGAATTGCTTGATAAGGGATTCATTCGACCGAGCGTGTCACCTTGGGGTGCGCCAATTTTATTTGTTAAGAAGAAGGATGGATCGATGCGTCTATGCATTGAATACAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGATCTATTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGATTGATCTTCGGTCGGGATATCATCTACTGAGGATTAAGGATGGTGATGTACCGAAGACAGCATTTCGTTCCAGATATGGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGGCAGTTTTATAG

Coding sequence (CDS)

ATGGCCCCCGCAGAGCTGAAAGAACTGAAGGTGCAGTTACAAGAATTGCTTGATAAGGGATTCATTCGACCGAGCGTGTCACCTTGGGGTGCGCCAATTTTATTTGTTAAGAAGAAGGATGGATCGATGCGTCTATGCATTGAATACAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGATCTATTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGATTGATCTTCGGTCGGGATATCATCTACTGAGGATTAAGGATGGTGATGTACCGAAGACAGCATTTCGTTCCAGATATGGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGGCAGTTTTATAG

Protein sequence

MAPAELKELKVQLQELLDKGFIRPSVSPWGAPILFVKKKDGSMRLCIEYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHLLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVL

Homology

[Close]

BLAST of Cmc01g0012061 vs. NCBI nr
Match: KAA0032356.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 257.3 bits (656), Expect = 6.9e-65
Identity = 123/125 (98.40%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPILFVKKKDGSMRLCIEYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAPILFVKKKDGSMRLCI+YRELNKVTVKNR
Sbjct: 562 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPILFVKKKDGSMRLCIDYRELNKVTVKNR 621

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHLLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYH LRIKDGDVPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 622 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 681

Query: 121 NAPAV 126
           NAPAV
Sbjct: 682 NAPAV 686

[Close]

BLAST of Cmc01g0012061 vs. NCBI nr
Match: KAA0053368.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 256.9 bits (655), Expect = 9.0e-65
Identity = 122/125 (97.60%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPILFVKKKDGSMRLCIEYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAP+LFVKKKDGSMRLCI+YRELNKVTVKNR
Sbjct: 768 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 827

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHLLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYH LRIKDGDVPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 828 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 887

Query: 121 NAPAV 126
           NAPAV
Sbjct: 888 NAPAV 892

[Close]

BLAST of Cmc01g0012061 vs. NCBI nr
Match: KAA0065602.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 256.9 bits (655), Expect = 9.0e-65
Identity = 122/125 (97.60%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPILFVKKKDGSMRLCIEYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAP+LFVKKKDGSMRLCI+YRELNKVTVKNR
Sbjct: 722 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 781

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHLLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYH LRIKDGDVPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 782 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 841

Query: 121 NAPAV 126
           NAPAV
Sbjct: 842 NAPAV 846

[Close]

BLAST of Cmc01g0012061 vs. NCBI nr
Match: KAA0054785.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 256.9 bits (655), Expect = 9.0e-65
Identity = 122/125 (97.60%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPILFVKKKDGSMRLCIEYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAP+LFVKKKDGSMRLCI+YRELNKVTVKNR
Sbjct: 74  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 133

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHLLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYH LRIKDGDVPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 134 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 193

Query: 121 NAPAV 126
           NAPAV
Sbjct: 194 NAPAV 198

[Close]

BLAST of Cmc01g0012061 vs. NCBI nr
Match: KAA0047194.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 256.9 bits (655), Expect = 9.0e-65
Identity = 122/125 (97.60%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPILFVKKKDGSMRLCIEYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAP+LFVKKKDGSMRLCI+YRELNKVTVKNR
Sbjct: 719 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 778

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHLLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYH LRIKDGDVPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 779 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 838

Query: 121 NAPAV 126
           NAPAV
Sbjct: 839 NAPAV 843

[Close]

BLAST of Cmc01g0012061 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 127.9 bits (320), Expect = 8.2e-29
Identity = 57/118 (48.31%), Postives = 82/118 (69.49%), Query Frame = 0


Query: 7   KELKVQLQELLDKGFIRPSVSPWGAPILFVKKKDGSMRLCIEYRELNKVTVKNRYPLPRI 66
           +E+   +Q+LLD  FI PS SP  +P++ V KKDG+ RLC++YR LNK T+ + +PLPRI
Sbjct: 610 QEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRI 669

Query: 67  DDLFDQLQGATVFSKIDLRSGYHLLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 125
           D+L  ++  A +F+ +DL SGYH + ++  D  KTAF +  G YE+ VM FGL NAP+
Sbjct: 670 DNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPS 727

[Close]

BLAST of Cmc01g0012061 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 127.9 bits (320), Expect = 8.2e-29
Identity = 57/118 (48.31%), Postives = 82/118 (69.49%), Query Frame = 0


Query: 7   KELKVQLQELLDKGFIRPSVSPWGAPILFVKKKDGSMRLCIEYRELNKVTVKNRYPLPRI 66
           +E+   +Q+LLD  FI PS SP  +P++ V KKDG+ RLC++YR LNK T+ + +PLPRI
Sbjct: 636 QEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRI 695

Query: 67  DDLFDQLQGATVFSKIDLRSGYHLLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 125
           D+L  ++  A +F+ +DL SGYH + ++  D  KTAF +  G YE+ VM FGL NAP+
Sbjct: 696 DNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPS 753

[Close]

BLAST of Cmc01g0012061 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 5.9e-27
Identity = 50/124 (40.32%), Postives = 85/124 (68.55%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPILFVKKKDGSMRLCIEYRELNKVTVKNR 60
           + P +++ +  ++ + L  G IR S +    P++FV KK+G++R+ ++Y+ LNK    N 
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHLLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
           YPLP I+ L  ++QG+T+F+K+DL+S YHL+R++ GD  K AFR   G +E++VM +G++
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGIS 539

Query: 121 NAPA 125
            APA
Sbjct: 540 TAPA 543

[Close]

BLAST of Cmc01g0012061 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 5.9e-27
Identity = 50/124 (40.32%), Postives = 85/124 (68.55%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPILFVKKKDGSMRLCIEYRELNKVTVKNR 60
           + P +++ +  ++ + L  G IR S +    P++FV KK+G++R+ ++Y+ LNK    N 
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHLLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
           YPLP I+ L  ++QG+T+F+K+DL+S YHL+R++ GD  K AFR   G +E++VM +G++
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGIS 539

Query: 121 NAPA 125
            APA
Sbjct: 540 TAPA 543

[Close]

BLAST of Cmc01g0012061 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 5.9e-27
Identity = 50/124 (40.32%), Postives = 85/124 (68.55%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPILFVKKKDGSMRLCIEYRELNKVTVKNR 60
           + P +++ +  ++ + L  G IR S +    P++FV KK+G++R+ ++Y+ LNK    N 
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHLLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
           YPLP I+ L  ++QG+T+F+K+DL+S YHL+R++ GD  K AFR   G +E++VM +G++
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGIS 539

Query: 121 NAPA 125
            APA
Sbjct: 540 TAPA 543

[Close]

BLAST of Cmc01g0012061 vs. ExPASy TrEMBL
Match: A0A5A7SQP5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002220 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 3.3e-65
Identity = 123/125 (98.40%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPILFVKKKDGSMRLCIEYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAPILFVKKKDGSMRLCI+YRELNKVTVKNR
Sbjct: 562 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPILFVKKKDGSMRLCIDYRELNKVTVKNR 621

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHLLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYH LRIKDGDVPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 622 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 681

Query: 121 NAPAV 126
           NAPAV
Sbjct: 682 NAPAV 686

[Close]

BLAST of Cmc01g0012061 vs. ExPASy TrEMBL
Match: A0A5A7VBD0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold90G00480 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 4.3e-65
Identity = 122/125 (97.60%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPILFVKKKDGSMRLCIEYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAP+LFVKKKDGSMRLCI+YRELNKVTVKNR
Sbjct: 722 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 781

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHLLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYH LRIKDGDVPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 782 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 841

Query: 121 NAPAV 126
           NAPAV
Sbjct: 842 NAPAV 846

[Close]

BLAST of Cmc01g0012061 vs. ExPASy TrEMBL
Match: A0A5A7TB42 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold118G00260 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 4.3e-65
Identity = 122/125 (97.60%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPILFVKKKDGSMRLCIEYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAP+LFVKKKDGSMRLCI+YRELNKVTVKNR
Sbjct: 705 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 764

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHLLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYH LRIKDGDVPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 765 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 824

Query: 121 NAPAV 126
           NAPAV
Sbjct: 825 NAPAV 829

[Close]

BLAST of Cmc01g0012061 vs. ExPASy TrEMBL
Match: A0A5A7UM74 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold437G00700 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 4.3e-65
Identity = 122/125 (97.60%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPILFVKKKDGSMRLCIEYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAP+LFVKKKDGSMRLCI+YRELNKVTVKNR
Sbjct: 74  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 133

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHLLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYH LRIKDGDVPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 134 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 193

Query: 121 NAPAV 126
           NAPAV
Sbjct: 194 NAPAV 198

[Close]

BLAST of Cmc01g0012061 vs. ExPASy TrEMBL
Match: A0A5A7TV57 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00240 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 4.3e-65
Identity = 122/125 (97.60%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 1    MAPAELKELKVQLQELLDKGFIRPSVSPWGAPILFVKKKDGSMRLCIEYRELNKVTVKNR 60
            MAPAELKELKVQLQELLDKGFIRPSVSPWGAP+LFVKKKDGSMRLCI+YRELNKVTVKNR
Sbjct: 1063 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 1122

Query: 61   YPLPRIDDLFDQLQGATVFSKIDLRSGYHLLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
            YPLPRIDDLFDQLQGATVFSKIDLRSGYH LRIKDGDVPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 1123 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 1182

Query: 121  NAPAV 126
            NAPAV
Sbjct: 1183 NAPAV 1187

The following BLAST results are available for this feature:

BLAST of Cmc01g0012061 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032356.1	6.9e-65	98.40	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0053368.1	9.0e-65	97.60	pol protein [Cucumis melo var. makuwa]	[more]
KAA0065602.1	9.0e-65	97.60	pol protein [Cucumis melo var. makuwa]	[more]
KAA0054785.1	9.0e-65	97.60	pol protein [Cucumis melo var. makuwa]	[more]
KAA0047194.1	9.0e-65	97.60	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc01g0012061 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	8.2e-29	48.31	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	8.2e-29	48.31	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P0CT41	5.9e-27	40.32	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	5.9e-27	40.32	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	5.9e-27	40.32	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc01g0012061 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SQP5	3.3e-65	98.40	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7VBD0	4.3e-65	97.60	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold90...	[more]
A0A5A7TB42	4.3e-65	97.60	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold11...	[more]
A0A5A7UM74	4.3e-65	97.60	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold437G00700 PE...	[more]
A0A5A7TV57	4.3e-65	97.60	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Cmc01g0012061 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 61..125 e-value: 4.2E-54 score: 185.1
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 36..124 e-value: 1.4E-8 score: 34.5
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..121 e-value: 4.2E-54 score: 185.1
None	No IPR available	PANTHER	PTHR15503:SF11	RETROTRANSPOSON GAG-LIKE PROTEIN 6	coord: 4..124
None	No IPR available	CDD	cd01647	RT_LTR	coord: 20..125 e-value: 1.31993E-57 score: 174.321
IPR032567	LDOC1-related	PANTHER	PTHR15503	LDOC1 RELATED	coord: 4..124
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0012061.1	Cmc01g0012061.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding