Cmc01g0011891 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0011891
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr01: 7547726 .. 7548445 (-)
RNA-Seq Expression	Cmc01g0011891
Synteny	Cmc01g0011891

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCGACTTTGATGTAATCCTGGGTATGGATTGGTTAGCCGCTAACCACGCCAGTATAGATTGTTCCCGTAAGGAGGTAACGTTTAACCCTCCCTCGAGGGCCAGTTTTAAATTTAAGGGAGAAGGGTCAAGGTCGTTGCCTCAGGTAATCTCAGCCATCAGGGCCAGTAAACTGCTCAGTCAGGGTACTTGGGGTATCTTAGCGAGCGTGGTGGATACTAGAGAGGCCGATGTATCCCTGTCATCAGAACCGGTAGTGAGGGACTATCCGGATGTCTTTCCTGAGGAACTTCCAGGGTTACCTCCGCACAGGGAGGTTGAGTTTGCCATAGAGTTGGAGCCGGGCACGGTTCCTATATCCAGGGCCCCTTACAGAATGGCCCCCGCAGAGCTGAAAGAACTGAAGGTGCAGTTGCAAGAATTGCTTGATAAGGGATTCATTCGACCGAGCGTGTCACCTTGGGGTGCGCCAGTTTTATTTGTTAAGAAGAAGGATGGATCGATGCGTCTATGCATTGACTATAGGGAGTTGAACAAAGTAACCATAAAGAACAGATATCCCTTGCCCAGGATCGACGATCTATTTGACCAGTTACAGGGAGCCACAGTATTCTCTAAAATTGATCTTCGGTCGGGATACCATCAGCTGAGGATTAAGGATGGGGATGTATCGAAAACAACGTTTCGTTCCAGATATGGGCACTACGAGTTTATGTGA

mRNA sequence

ATGCTCGACTTTGATGTAATCCTGGGTATGGATTGGTTAGCCGCTAACCACGCCAGTATAGATTGTTCCCGTAAGGAGGTAACGTTTAACCCTCCCTCGAGGGCCAGTTTTAAATTTAAGGGAGAAGGGTCAAGGTCGTTGCCTCAGGTAATCTCAGCCATCAGGGCCAGTAAACTGCTCAGTCAGGGTACTTGGGGTATCTTAGCGAGCGTGGTGGATACTAGAGAGGCCGATGTATCCCTGTCATCAGAACCGGTAGTGAGGGACTATCCGGATGTCTTTCCTGAGGAACTTCCAGGGTTACCTCCGCACAGGGAGGTTGAGTTTGCCATAGAGTTGGAGCCGGGCACGGTTCCTATATCCAGGGCCCCTTACAGAATGGCCCCCGCAGAGCTGAAAGAACTGAAGGTGCAGTTGCAAGAATTGCTTGATAAGGGATTCATTCGACCGAGCGTGTCACCTTGGGGTGCGCCAGTTTTATTTGTTAAGAAGAAGGATGGATCGATGCGTCTATGCATTGACTATAGGGAGTTGAACAAAGTAACCATAAAGAACAGATATCCCTTGCCCAGGATCGACGATCTATTTGACCAGTTACAGGGAGCCACAGTATTCTCTAAAATTGATCTTCGGTCGGGATACCATCAGCTGAGGATTAAGGATGGGGATGTATCGAAAACAACGTTTCGTTCCAGATATGGGCACTACGAGTTTATGTGA

Coding sequence (CDS)

ATGCTCGACTTTGATGTAATCCTGGGTATGGATTGGTTAGCCGCTAACCACGCCAGTATAGATTGTTCCCGTAAGGAGGTAACGTTTAACCCTCCCTCGAGGGCCAGTTTTAAATTTAAGGGAGAAGGGTCAAGGTCGTTGCCTCAGGTAATCTCAGCCATCAGGGCCAGTAAACTGCTCAGTCAGGGTACTTGGGGTATCTTAGCGAGCGTGGTGGATACTAGAGAGGCCGATGTATCCCTGTCATCAGAACCGGTAGTGAGGGACTATCCGGATGTCTTTCCTGAGGAACTTCCAGGGTTACCTCCGCACAGGGAGGTTGAGTTTGCCATAGAGTTGGAGCCGGGCACGGTTCCTATATCCAGGGCCCCTTACAGAATGGCCCCCGCAGAGCTGAAAGAACTGAAGGTGCAGTTGCAAGAATTGCTTGATAAGGGATTCATTCGACCGAGCGTGTCACCTTGGGGTGCGCCAGTTTTATTTGTTAAGAAGAAGGATGGATCGATGCGTCTATGCATTGACTATAGGGAGTTGAACAAAGTAACCATAAAGAACAGATATCCCTTGCCCAGGATCGACGATCTATTTGACCAGTTACAGGGAGCCACAGTATTCTCTAAAATTGATCTTCGGTCGGGATACCATCAGCTGAGGATTAAGGATGGGGATGTATCGAAAACAACGTTTCGTTCCAGATATGGGCACTACGAGTTTATGTGA

Protein sequence

MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSRASFKFKGEGSRSLPQVISAIRASKLLSQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVSKTTFRSRYGHYEFM

Homology

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BLAST of Cmc01g0011891 vs. NCBI nr
Match: KAA0057668.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 474.9 bits (1221), Expect = 4.0e-130
Identity = 233/239 (97.49%), Postives = 235/239 (98.33%), Query Frame = 0


Query: 1   MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSRASFKFKGEGSRSLPQVISAIRASKLL 60
           MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSRASFKFKGEGSRSLPQVISAIRASKLL
Sbjct: 198 MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSRASFKFKGEGSRSLPQVISAIRASKLL 257

Query: 61  SQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPI 120
           SQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPI
Sbjct: 258 SQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPI 317

Query: 121 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 180
           SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLF KKKDGSMRLCIDYRELNK
Sbjct: 318 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFAKKKDGSMRLCIDYRELNK 377

Query: 181 VTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVSKTTFRSRYGHYEFM 240
           VT+KNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DV KT FRSRYGHYEF+
Sbjct: 378 VTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFI 436

[Close]

BLAST of Cmc01g0011891 vs. NCBI nr
Match: KAA0036204.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 473.4 bits (1217), Expect = 1.2e-129
Identity = 232/239 (97.07%), Postives = 234/239 (97.91%), Query Frame = 0


Query: 1   MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSRASFKFKGEGSRSLPQVISAIRASKLL 60
           MLDFDVILGMDWLAANHASIDCSRKEVTFNPPS ASFKFKGEGSRSLPQVISAIRASKLL
Sbjct: 595 MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGEGSRSLPQVISAIRASKLL 654

Query: 61  SQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPI 120
           SQGTWGILASVVDTRE DVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPI
Sbjct: 655 SQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPI 714

Query: 121 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 180
           SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSM LCIDYRELNK
Sbjct: 715 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMHLCIDYRELNK 774

Query: 181 VTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVSKTTFRSRYGHYEFM 240
           VT+KNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDV KT FRSRYGHYEF+
Sbjct: 775 VTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVLKTAFRSRYGHYEFI 833

[Close]

BLAST of Cmc01g0011891 vs. NCBI nr
Match: KAA0040188.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 473.0 bits (1216), Expect = 1.5e-129
Identity = 232/239 (97.07%), Postives = 234/239 (97.91%), Query Frame = 0


Query: 1   MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSRASFKFKGEGSRSLPQVISAIRASKLL 60
           MLDFDVILGMDWLAANHASIDCSRKEVTFNPPS ASFKFKG GSRSLPQVISAIRASKLL
Sbjct: 579 MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSRSLPQVISAIRASKLL 638

Query: 61  SQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPI 120
           SQGTWGILASVVDTRE DVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPI
Sbjct: 639 SQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPI 698

Query: 121 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 180
           SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK
Sbjct: 699 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 758

Query: 181 VTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVSKTTFRSRYGHYEFM 240
           VT+KNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDV KT FRSRYGHYEF+
Sbjct: 759 VTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFI 817

[Close]

BLAST of Cmc01g0011891 vs. NCBI nr
Match: KAA0047433.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 473.0 bits (1216), Expect = 1.5e-129
Identity = 232/239 (97.07%), Postives = 234/239 (97.91%), Query Frame = 0


Query: 1    MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSRASFKFKGEGSRSLPQVISAIRASKLL 60
            MLDFDVILGMDWLAANHASIDCSRKEVTFNPPS ASFKFKG GSRSLPQVISAIRASKLL
Sbjct: 937  MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSRSLPQVISAIRASKLL 996

Query: 61   SQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPI 120
            SQGTWGILASVVDTRE DVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPI
Sbjct: 997  SQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPI 1056

Query: 121  SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 180
            SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK
Sbjct: 1057 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 1116

Query: 181  VTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVSKTTFRSRYGHYEFM 240
            VT+KNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDV KT FRSRYGHYEF+
Sbjct: 1117 VTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFI 1175

[Close]

BLAST of Cmc01g0011891 vs. NCBI nr
Match: KAA0062194.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 472.6 bits (1215), Expect = 2.0e-129
Identity = 232/239 (97.07%), Postives = 234/239 (97.91%), Query Frame = 0


Query: 1   MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSRASFKFKGEGSRSLPQVISAIRASKLL 60
           MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSRASFKFKGEGSRSLPQVISAIRASKLL
Sbjct: 341 MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSRASFKFKGEGSRSLPQVISAIRASKLL 400

Query: 61  SQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPI 120
           SQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPI
Sbjct: 401 SQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPI 460

Query: 121 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 180
           SRAPYRMAPAELKELKVQL ELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK
Sbjct: 461 SRAPYRMAPAELKELKVQLHELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 520

Query: 181 VTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVSKTTFRSRYGHYEFM 240
           VT+KNRYPLPRIDDLFDQL GATVFSKIDLRSGYHQLRIKD DV KT FRSRYGHYEF+
Sbjct: 521 VTVKNRYPLPRIDDLFDQLHGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFI 579

[Close]

BLAST of Cmc01g0011891 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 124.0 bits (310), Expect = 2.3e-27
Identity = 63/152 (41.45%), Postives = 92/152 (60.53%), Query Frame = 0


Query: 90  YPDVFPEELPGLPP---HREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKG 149
           Y ++   +LP  P    +  V+  IE++PG       PY +     +E+   +Q+LLD  
Sbjct: 564 YREIIRNDLPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNK 623

Query: 150 FIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTIKNRYPLPRIDDLFDQLQGATVFS 209
           FI PS SP  +PV+ V KKDG+ RLC+DYR LNK TI + +PLPRID+L  ++  A +F+
Sbjct: 624 FIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFT 683

Query: 210 KIDLRSGYHQLRIKDGDVSKTTFRSRYGHYEF 239
            +DL SGYHQ+ ++  D  KT F +  G YE+
Sbjct: 684 TLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEY 715

[Close]

BLAST of Cmc01g0011891 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 124.0 bits (310), Expect = 2.3e-27
Identity = 63/152 (41.45%), Postives = 92/152 (60.53%), Query Frame = 0


Query: 90  YPDVFPEELPGLPP---HREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKG 149
           Y ++   +LP  P    +  V+  IE++PG       PY +     +E+   +Q+LLD  
Sbjct: 590 YREIIRNDLPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNK 649

Query: 150 FIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTIKNRYPLPRIDDLFDQLQGATVFS 209
           FI PS SP  +PV+ V KKDG+ RLC+DYR LNK TI + +PLPRID+L  ++  A +F+
Sbjct: 650 FIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFT 709

Query: 210 KIDLRSGYHQLRIKDGDVSKTTFRSRYGHYEF 239
            +DL SGYHQ+ ++  D  KT F +  G YE+
Sbjct: 710 TLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEY 741

[Close]

BLAST of Cmc01g0011891 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.2e-23
Identity = 53/144 (36.81%), Postives = 88/144 (61.11%), Query Frame = 0


Query: 96  EELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPW 155
           E+LP   P + +EF +EL      +    Y + P +++ +  ++ + L  G IR S +  
Sbjct: 391 EKLP--KPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAIN 450

Query: 156 GAPVLFVKKKDGSMRLCIDYRELNKVTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYH 215
             PV+FV KK+G++R+ +DY+ LNK    N YPLP I+ L  ++QG+T+F+K+DL+S YH
Sbjct: 451 ACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYH 510

Query: 216 QLRIKDGDVSKTTFRSRYGHYEFM 240
            +R++ GD  K  FR   G +E++
Sbjct: 511 LIRVRKGDEHKLAFRCPRGVFEYL 532

[Close]

BLAST of Cmc01g0011891 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.2e-23
Identity = 53/144 (36.81%), Postives = 88/144 (61.11%), Query Frame = 0


Query: 96  EELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPW 155
           E+LP   P + +EF +EL      +    Y + P +++ +  ++ + L  G IR S +  
Sbjct: 391 EKLP--KPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAIN 450

Query: 156 GAPVLFVKKKDGSMRLCIDYRELNKVTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYH 215
             PV+FV KK+G++R+ +DY+ LNK    N YPLP I+ L  ++QG+T+F+K+DL+S YH
Sbjct: 451 ACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYH 510

Query: 216 QLRIKDGDVSKTTFRSRYGHYEFM 240
            +R++ GD  K  FR   G +E++
Sbjct: 511 LIRVRKGDEHKLAFRCPRGVFEYL 532

[Close]

BLAST of Cmc01g0011891 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.2e-23
Identity = 53/144 (36.81%), Postives = 88/144 (61.11%), Query Frame = 0


Query: 96  EELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPW 155
           E+LP   P + +EF +EL      +    Y + P +++ +  ++ + L  G IR S +  
Sbjct: 391 EKLP--KPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAIN 450

Query: 156 GAPVLFVKKKDGSMRLCIDYRELNKVTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYH 215
             PV+FV KK+G++R+ +DY+ LNK    N YPLP I+ L  ++QG+T+F+K+DL+S YH
Sbjct: 451 ACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYH 510

Query: 216 QLRIKDGDVSKTTFRSRYGHYEFM 240
            +R++ GD  K  FR   G +E++
Sbjct: 511 LIRVRKGDEHKLAFRCPRGVFEYL 532

[Close]

BLAST of Cmc01g0011891 vs. ExPASy TrEMBL
Match: A0A5A7URA1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold126G00120 PE=4 SV=1)

HSP 1 Score: 474.9 bits (1221), Expect = 1.9e-130
Identity = 233/239 (97.49%), Postives = 235/239 (98.33%), Query Frame = 0


Query: 1   MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSRASFKFKGEGSRSLPQVISAIRASKLL 60
           MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSRASFKFKGEGSRSLPQVISAIRASKLL
Sbjct: 198 MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSRASFKFKGEGSRSLPQVISAIRASKLL 257

Query: 61  SQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPI 120
           SQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPI
Sbjct: 258 SQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPI 317

Query: 121 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 180
           SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLF KKKDGSMRLCIDYRELNK
Sbjct: 318 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFAKKKDGSMRLCIDYRELNK 377

Query: 181 VTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVSKTTFRSRYGHYEFM 240
           VT+KNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DV KT FRSRYGHYEF+
Sbjct: 378 VTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFI 436

[Close]

BLAST of Cmc01g0011891 vs. ExPASy TrEMBL
Match: A0A5A7SY46 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold69G00790 PE=4 SV=1)

HSP 1 Score: 473.4 bits (1217), Expect = 5.6e-130
Identity = 232/239 (97.07%), Postives = 234/239 (97.91%), Query Frame = 0


Query: 1   MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSRASFKFKGEGSRSLPQVISAIRASKLL 60
           MLDFDVILGMDWLAANHASIDCSRKEVTFNPPS ASFKFKGEGSRSLPQVISAIRASKLL
Sbjct: 595 MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGEGSRSLPQVISAIRASKLL 654

Query: 61  SQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPI 120
           SQGTWGILASVVDTRE DVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPI
Sbjct: 655 SQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPI 714

Query: 121 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 180
           SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSM LCIDYRELNK
Sbjct: 715 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMHLCIDYRELNK 774

Query: 181 VTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVSKTTFRSRYGHYEFM 240
           VT+KNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDV KT FRSRYGHYEF+
Sbjct: 775 VTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVLKTAFRSRYGHYEFI 833

[Close]

BLAST of Cmc01g0011891 vs. ExPASy TrEMBL
Match: A0A5A7TB42 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold118G00260 PE=4 SV=1)

HSP 1 Score: 473.0 bits (1216), Expect = 7.3e-130
Identity = 232/239 (97.07%), Postives = 234/239 (97.91%), Query Frame = 0


Query: 1   MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSRASFKFKGEGSRSLPQVISAIRASKLL 60
           MLDFDVILGMDWLAANHASIDCSRKEVTFNPPS ASFKFKG GSRSLPQVISAIRASKLL
Sbjct: 579 MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSRSLPQVISAIRASKLL 638

Query: 61  SQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPI 120
           SQGTWGILASVVDTRE DVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPI
Sbjct: 639 SQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPI 698

Query: 121 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 180
           SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK
Sbjct: 699 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 758

Query: 181 VTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVSKTTFRSRYGHYEFM 240
           VT+KNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDV KT FRSRYGHYEF+
Sbjct: 759 VTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFI 817

[Close]

BLAST of Cmc01g0011891 vs. ExPASy TrEMBL
Match: A0A5A7TV57 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00240 PE=4 SV=1)

HSP 1 Score: 473.0 bits (1216), Expect = 7.3e-130
Identity = 232/239 (97.07%), Postives = 234/239 (97.91%), Query Frame = 0


Query: 1    MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSRASFKFKGEGSRSLPQVISAIRASKLL 60
            MLDFDVILGMDWLAANHASIDCSRKEVTFNPPS ASFKFKG GSRSLPQVISAIRASKLL
Sbjct: 937  MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSRSLPQVISAIRASKLL 996

Query: 61   SQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPI 120
            SQGTWGILASVVDTRE DVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPI
Sbjct: 997  SQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPI 1056

Query: 121  SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 180
            SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK
Sbjct: 1057 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 1116

Query: 181  VTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVSKTTFRSRYGHYEFM 240
            VT+KNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDV KT FRSRYGHYEF+
Sbjct: 1117 VTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFI 1175

[Close]

BLAST of Cmc01g0011891 vs. ExPASy TrEMBL
Match: A0A5A7VPI8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40G001640 PE=4 SV=1)

HSP 1 Score: 472.6 bits (1215), Expect = 9.6e-130
Identity = 231/239 (96.65%), Postives = 234/239 (97.91%), Query Frame = 0


Query: 1   MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSRASFKFKGEGSRSLPQVISAIRASKLL 60
           MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSRASFKFKGEGSRSLPQVISAIRASKLL
Sbjct: 685 MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSRASFKFKGEGSRSLPQVISAIRASKLL 744

Query: 61  SQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPI 120
           SQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIE EPGTVPI
Sbjct: 745 SQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIEFEPGTVPI 804

Query: 121 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 180
           SRAPYRMAP  LKELK+QLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK
Sbjct: 805 SRAPYRMAPTVLKELKMQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 864

Query: 181 VTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVSKTTFRSRYGHYEFM 240
           VT+KNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDV KT FRSRYGHYEF+
Sbjct: 865 VTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFI 923

The following BLAST results are available for this feature:

BLAST of Cmc01g0011891 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057668.1	4.0e-130	97.49	pol protein [Cucumis melo var. makuwa]	[more]
KAA0036204.1	1.2e-129	97.07	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0040188.1	1.5e-129	97.07	pol protein [Cucumis melo var. makuwa]	[more]
KAA0047433.1	1.5e-129	97.07	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0062194.1	2.0e-129	97.07	gag protease polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc01g0011891 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	2.3e-27	41.45	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	2.3e-27	41.45	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q9UR07	1.2e-23	36.81	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	1.2e-23	36.81	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	1.2e-23	36.81	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc01g0011891 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7URA1	1.9e-130	97.49	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold12...	[more]
A0A5A7SY46	5.6e-130	97.07	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7TB42	7.3e-130	97.07	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold11...	[more]
A0A5A7TV57	7.3e-130	97.07	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7VPI8	9.6e-130	96.65	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40...	[more]

BLAST of Cmc01g0011891 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 108..238 e-value: 3.9E-56 score: 191.7
None	No IPR available	PFAM	PF08284	RVP_2	coord: 2..31 e-value: 2.4E-9 score: 37.1
None	No IPR available	PANTHER	PTHR24559:SF330	RNA-DIRECTED DNA POLYMERASE HOMOLOG	coord: 2..194
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..194
None	No IPR available	CDD	cd01647	RT_LTR	coord: 146..238 e-value: 1.98076E-50 score: 160.839
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 187..214 e-value: 3.9E-56 score: 191.7
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 1..39 e-value: 1.1E-6 score: 30.4
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 162..230 e-value: 3.0E-7 score: 30.2
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 86..238

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0011891.1	Cmc01g0011891.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding