Cmc01g0010451 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0010451
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr01: 5449850 .. 5450344 (-)
RNA-Seq Expression	Cmc01g0010451
Synteny	Cmc01g0010451

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGTCAAATCGGTATTTTTGAATGGATATCTAGAAGAAGAAGTCTACTTAGAACAACCTCCTAGTTATTCTGTGAAAGGCCAAGAGGATAAAATTCTAAAATTGAATAAGACATTGTCTGGATTGAAACAAGCACCAAGAATGTGGAATAGTAGAATCAACAAATATTTTCTTGATAATGAGTATTTAAGATGTCTTTATGAACATTCTCTTTGTATTAAGACTGATGGTCATGGAGATATTTTGGTGGTTTGTTTGTACGTGAATGACTTAATTATTACAGGAAATTGTGCAAGTATGTTTAAAGATCTTAAGAAGGCGATGACCCAAGAATTTAAAATGACAGATATAGGGCTGATGTCATATTATCTTGCCATTGAGGTGAAGCAGTCAGAGGAAGGTATTTTCATCTCTCAAGAACAATATACTAGAGAAATTCTAGAGAAATTCAATATGATTAATTCTAAGCCTGTTACAATTTCAAAAGTTTAG

mRNA sequence

ATGGACGTCAAATCGGTATTTTTGAATGGATATCTAGAAGAAGAAGTCTACTTAGAACAACCTCCTAGTTATTCTGTGAAAGGCCAAGAGGATAAAATTCTAAAATTGAATAAGACATTGTCTGGATTGAAACAAGCACCAAGAATGTGGAATAGTAGAATCAACAAATATTTTCTTGATAATGAGTATTTAAGATGTCTTTATGAACATTCTCTTTGTATTAAGACTGATGGTCATGGAGATATTTTGGTGGTTTGTTTGTACGTGAATGACTTAATTATTACAGGAAATTGTGCAAGTATGTTTAAAGATCTTAAGAAGGCGATGACCCAAGAATTTAAAATGACAGATATAGGGCTGATGTCATATTATCTTGCCATTGAGGTGAAGCAGTCAGAGGAAGGTATTTTCATCTCTCAAGAACAATATACTAGAGAAATTCTAGAGAAATTCAATATGATTAATTCTAAGCCTGTTACAATTTCAAAAGTTTAG

Coding sequence (CDS)

ATGGACGTCAAATCGGTATTTTTGAATGGATATCTAGAAGAAGAAGTCTACTTAGAACAACCTCCTAGTTATTCTGTGAAAGGCCAAGAGGATAAAATTCTAAAATTGAATAAGACATTGTCTGGATTGAAACAAGCACCAAGAATGTGGAATAGTAGAATCAACAAATATTTTCTTGATAATGAGTATTTAAGATGTCTTTATGAACATTCTCTTTGTATTAAGACTGATGGTCATGGAGATATTTTGGTGGTTTGTTTGTACGTGAATGACTTAATTATTACAGGAAATTGTGCAAGTATGTTTAAAGATCTTAAGAAGGCGATGACCCAAGAATTTAAAATGACAGATATAGGGCTGATGTCATATTATCTTGCCATTGAGGTGAAGCAGTCAGAGGAAGGTATTTTCATCTCTCAAGAACAATATACTAGAGAAATTCTAGAGAAATTCAATATGATTAATTCTAAGCCTGTTACAATTTCAAAAGTTTAG

Protein sequence

MDVKSVFLNGYLEEEVYLEQPPSYSVKGQEDKILKLNKTLSGLKQAPRMWNSRINKYFLDNEYLRCLYEHSLCIKTDGHGDILVVCLYVNDLIITGNCASMFKDLKKAMTQEFKMTDIGLMSYYLAIEVKQSEEGIFISQEQYTREILEKFNMINSKPVTISKV

Homology

[Close]

BLAST of Cmc01g0010451 vs. NCBI nr
Match: TYK18362.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 288.1 bits (736), Expect = 4.7e-74
Identity = 141/159 (88.68%), Postives = 148/159 (93.08%), Query Frame = 0


Query: 1    MDVKSVFLNGYLEEEVYLEQPPSYSVKGQEDKILKLNKTLSGLKQAPRMWNSRINKYFLD 60
            MDVKS FLNGYLEEEVYLEQPP YSVKGQEDK+LKL K L GLKQAPRMWNSRINKYFLD
Sbjct: 933  MDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLKKALYGLKQAPRMWNSRINKYFLD 992

Query: 61   NEYLRCLYEHSLCIKTDGHGDILVVCLYVNDLIITGNCASMFKDLKKAMTQEFKMTDIGL 120
            N YLRC YEHSL IK +GHGDILVVCLYV+DLI TGNCASMF+DLKKAMTQEF+MTDIGL
Sbjct: 993  NGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKKAMTQEFEMTDIGL 1052

Query: 121  MSYYLAIEVKQSEEGIFISQEQYTREILEKFNMINSKPV 160
            MSYYL IEVKQSEEGIFISQE+YTREILEKFNM+NSKPV
Sbjct: 1053 MSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPV 1091

[Close]

BLAST of Cmc01g0010451 vs. NCBI nr
Match: TYJ96309.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 288.1 bits (736), Expect = 4.7e-74
Identity = 141/159 (88.68%), Postives = 148/159 (93.08%), Query Frame = 0


Query: 1    MDVKSVFLNGYLEEEVYLEQPPSYSVKGQEDKILKLNKTLSGLKQAPRMWNSRINKYFLD 60
            MDVKS FLNGYLEEEVYLEQPP YSVKGQEDK+LKL K L GLKQAPRMWNSRINKYFLD
Sbjct: 933  MDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLKKALYGLKQAPRMWNSRINKYFLD 992

Query: 61   NEYLRCLYEHSLCIKTDGHGDILVVCLYVNDLIITGNCASMFKDLKKAMTQEFKMTDIGL 120
            N YLRC YEHSL IK +GHGDILVVCLYV+DLI TGNCASMF+DLKKAMTQEF+MTDIGL
Sbjct: 993  NGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKKAMTQEFEMTDIGL 1052

Query: 121  MSYYLAIEVKQSEEGIFISQEQYTREILEKFNMINSKPV 160
            MSYYL IEVKQSEEGIFISQE+YTREILEKFNM+NSKPV
Sbjct: 1053 MSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPV 1091

[Close]

BLAST of Cmc01g0010451 vs. NCBI nr
Match: TYK06895.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 288.1 bits (736), Expect = 4.7e-74
Identity = 141/159 (88.68%), Postives = 148/159 (93.08%), Query Frame = 0


Query: 1    MDVKSVFLNGYLEEEVYLEQPPSYSVKGQEDKILKLNKTLSGLKQAPRMWNSRINKYFLD 60
            MDVKS FLNGYLEEEVYLEQPP YSVKGQEDK+LKL K L GLKQAPRMWNSRINKYFLD
Sbjct: 933  MDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLKKALYGLKQAPRMWNSRINKYFLD 992

Query: 61   NEYLRCLYEHSLCIKTDGHGDILVVCLYVNDLIITGNCASMFKDLKKAMTQEFKMTDIGL 120
            N YLRC YEHSL IK +GHGDILVVCLYV+DLI TGNCASMF+DLKKAMTQEF+MTDIGL
Sbjct: 993  NGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKKAMTQEFEMTDIGL 1052

Query: 121  MSYYLAIEVKQSEEGIFISQEQYTREILEKFNMINSKPV 160
            MSYYL IEVKQSEEGIFISQE+YTREILEKFNM+NSKPV
Sbjct: 1053 MSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPV 1091

[Close]

BLAST of Cmc01g0010451 vs. NCBI nr
Match: TYK08113.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 288.1 bits (736), Expect = 4.7e-74
Identity = 141/159 (88.68%), Postives = 148/159 (93.08%), Query Frame = 0


Query: 1    MDVKSVFLNGYLEEEVYLEQPPSYSVKGQEDKILKLNKTLSGLKQAPRMWNSRINKYFLD 60
            MDVKS FLNGYLEEEVYLEQPP YSVKGQEDK+LKL K L GLKQAPRMWNSRINKYFLD
Sbjct: 933  MDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLKKALYGLKQAPRMWNSRINKYFLD 992

Query: 61   NEYLRCLYEHSLCIKTDGHGDILVVCLYVNDLIITGNCASMFKDLKKAMTQEFKMTDIGL 120
            N YLRC YEHSL IK +GHGDILVVCLYV+DLI TGNCASMF+DLKKAMTQEF+MTDIGL
Sbjct: 993  NGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKKAMTQEFEMTDIGL 1052

Query: 121  MSYYLAIEVKQSEEGIFISQEQYTREILEKFNMINSKPV 160
            MSYYL IEVKQSEEGIFISQE+YTREILEKFNM+NSKPV
Sbjct: 1053 MSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPV 1091

[Close]

BLAST of Cmc01g0010451 vs. NCBI nr
Match: TYK03241.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 288.1 bits (736), Expect = 4.7e-74
Identity = 141/159 (88.68%), Postives = 148/159 (93.08%), Query Frame = 0


Query: 1   MDVKSVFLNGYLEEEVYLEQPPSYSVKGQEDKILKLNKTLSGLKQAPRMWNSRINKYFLD 60
           MDVKS FLNGYLEEEVYLEQPP YSVKGQEDK+LKL K L GLKQAPRMWNSRINKYFLD
Sbjct: 830 MDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLKKALYGLKQAPRMWNSRINKYFLD 889

Query: 61  NEYLRCLYEHSLCIKTDGHGDILVVCLYVNDLIITGNCASMFKDLKKAMTQEFKMTDIGL 120
           N YLRC YEHSL IK +GHGDILVVCLYV+DLI TGNCASMF+DLKKAMTQEF+MTDIGL
Sbjct: 890 NGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKKAMTQEFEMTDIGL 949

Query: 121 MSYYLAIEVKQSEEGIFISQEQYTREILEKFNMINSKPV 160
           MSYYL IEVKQSEEGIFISQE+YTREILEKFNM+NSKPV
Sbjct: 950 MSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPV 988

[Close]

BLAST of Cmc01g0010451 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 3.5e-27
Identity = 58/162 (35.80%), Postives = 100/162 (61.73%), Query Frame = 0


Query: 1    MDVKSVFLNGYLEEEVYLEQPPSYSVKGQEDKILKLNKTLSGLKQAPRMWNSRINKYFLD 60
            +DVK+ FL+G LEEE+Y+EQP  + V G++  + KLNK+L GLKQAPR W  + + +   
Sbjct: 921  LDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKS 980

Query: 61   NEYLRCLYEHSLCIKTDGHGDILVVCLYVNDLIITGNCASMFKDLKKAMTQEFKMTDIGL 120
              YL+   +  +  K     + +++ LYV+D++I G    +   LK  +++ F M D+G 
Sbjct: 981  QTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGP 1040

Query: 121  MSYYLAIEV--KQSEEGIFISQEQYTREILEKFNMINSKPVT 161
                L +++  +++   +++SQE+Y   +LE+FNM N+KPV+
Sbjct: 1041 AQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVS 1082

[Close]

BLAST of Cmc01g0010451 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 9.4e-25
Identity = 57/159 (35.85%), Postives = 95/159 (59.75%), Query Frame = 0


Query: 1    MDVKSVFLNGYLEEEVYLEQPPSYSVKGQEDKILKLNKTLSGLKQAPRMWNSRINKYFLD 60
            +DV + FL G L +EVY+ QPP +  K + D + +L K + GLKQAPR W   +  Y L 
Sbjct: 1047 LDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLT 1106

Query: 61   NEYLRCLYEHSLCIKTDGHGDILVVCLYVNDLIITGNCASMFKDLKKAMTQEFKMTDIGL 120
              ++  + + SL +   G   I+ + +YV+D++ITGN   + K    A++Q F + +   
Sbjct: 1107 VGFVNSISDTSLFVLQRGR-SIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHED 1166

Query: 121  MSYYLAIEVKQSEEGIFISQEQYTREILEKFNMINSKPV 160
            + Y+L IE K+  +G+ +SQ +YT ++L + NM+ +KPV
Sbjct: 1167 LHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPV 1204

[Close]

BLAST of Cmc01g0010451 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.4e-23
Identity = 57/160 (35.62%), Postives = 94/160 (58.75%), Query Frame = 0


Query: 1    MDVKSVFLNGYLEEEVYLEQPPSYSVKGQEDKILKLNKTLSGLKQAPRMWNSRINKYFLD 60
            +DV + FL G L ++VY+ QPP +  K + + + KL K L GLKQAPR W   +  Y L 
Sbjct: 1064 LDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLT 1123

Query: 61   NEYLRCLYEHSLCIKTDGHGDILVVCLYVNDLIITGNCASMFKDLKKAMTQEFKMTDIGL 120
              ++  + + SL +   G   I+ + +YV+D++ITGN  ++  +    ++Q F + D   
Sbjct: 1124 IGFVNSVSDTSLFVLQRGK-SIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEE 1183

Query: 121  MSYYLAIEVKQSEEGIFISQEQYTREILEKFNMINSKPVT 161
            + Y+L IE K+   G+ +SQ +Y  ++L + NMI +KPVT
Sbjct: 1184 LHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVT 1222

[Close]

BLAST of Cmc01g0010451 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 104.4 bits (259), Expect = 1.3e-21
Identity = 54/161 (33.54%), Postives = 92/161 (57.14%), Query Frame = 0


Query: 1    MDVKSVFLNGYLEEEVYLEQPPSYSVKGQEDKILKLNKTLSGLKQAPRMWNSRINKYFLD 60
            MDVK+ FLNG L+EE+Y+  P   S     D + KLNK + GLKQA R W     +   +
Sbjct: 1001 MDVKTAFLNGTLKEEIYMRLPQGISC--NSDNVCKLNKAIYGLKQAARCWFEVFEQALKE 1060

Query: 61   NEYLRCLYEHSLCIKTDGH-GDILVVCLYVNDLIITGNCASMFKDLKKAMTQEFKMTDIG 120
             E++    +  + I   G+  + + V LYV+D++I     +   + K+ + ++F+MTD+ 
Sbjct: 1061 CEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLN 1120

Query: 121  LMSYYLAIEVKQSEEGIFISQEQYTREILEKFNMINSKPVT 161
             + +++ I ++  E+ I++SQ  Y ++IL KFNM N   V+
Sbjct: 1121 EIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVS 1159

[Close]

BLAST of Cmc01g0010451 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 85.9 bits (211), Expect = 4.7e-16
Identity = 50/170 (29.41%), Postives = 88/170 (51.76%), Query Frame = 0


Query: 1   MDVKSVFLNGYLEEEVYLEQPPSYSVKGQEDKILKLNKTLSGLKQAPRMWNSRINKYFLD 60
           MDV + FLN  ++E +Y++QPP +  +   D + +L   + GLKQAP +WN  IN     
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 61  NEYLRCLYEHSLCIKTDGHGDILVVCLYVNDLIITGNCASMFKDLKKAMTQEFKMTDIGL 120
             + R   EH L  ++   G I  + +YV+DL++      ++  +K+ +T+ + M D+G 
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPI-YIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGK 120

Query: 121 MSYYLAIEVKQSEEG-IFISQEQYTREI----------LEKFNMINSKPV 160
           +  +L + + QS  G I +S + Y  +           L +  + NSKP+
Sbjct: 121 VDKFLGLNIHQSSNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPL 169

[Close]

BLAST of Cmc01g0010451 vs. ExPASy TrEMBL
Match: A0A5A7V3X9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003030 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 2.3e-74
Identity = 141/159 (88.68%), Postives = 148/159 (93.08%), Query Frame = 0


Query: 1    MDVKSVFLNGYLEEEVYLEQPPSYSVKGQEDKILKLNKTLSGLKQAPRMWNSRINKYFLD 60
            MDVKS FLNGYLEEEVYLEQPP YSVKGQEDK+LKL K L GLKQAPRMWNSRINKYFLD
Sbjct: 933  MDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLKKALYGLKQAPRMWNSRINKYFLD 992

Query: 61   NEYLRCLYEHSLCIKTDGHGDILVVCLYVNDLIITGNCASMFKDLKKAMTQEFKMTDIGL 120
            N YLRC YEHSL IK +GHGDILVVCLYV+DLI TGNCASMF+DLKKAMTQEF+MTDIGL
Sbjct: 993  NGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKKAMTQEFEMTDIGL 1052

Query: 121  MSYYLAIEVKQSEEGIFISQEQYTREILEKFNMINSKPV 160
            MSYYL IEVKQSEEGIFISQE+YTREILEKFNM+NSKPV
Sbjct: 1053 MSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPV 1091

[Close]

BLAST of Cmc01g0010451 vs. ExPASy TrEMBL
Match: A0A5A7SJX6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G002010 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 2.3e-74
Identity = 141/159 (88.68%), Postives = 148/159 (93.08%), Query Frame = 0


Query: 1    MDVKSVFLNGYLEEEVYLEQPPSYSVKGQEDKILKLNKTLSGLKQAPRMWNSRINKYFLD 60
            MDVKS FLNGYLEEEVYLEQPP YSVKGQEDK+LKL K L GLKQAPRMWNSRINKYFLD
Sbjct: 933  MDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLKKALYGLKQAPRMWNSRINKYFLD 992

Query: 61   NEYLRCLYEHSLCIKTDGHGDILVVCLYVNDLIITGNCASMFKDLKKAMTQEFKMTDIGL 120
            N YLRC YEHSL IK +GHGDILVVCLYV+DLI TGNCASMF+DLKKAMTQEF+MTDIGL
Sbjct: 993  NGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKKAMTQEFEMTDIGL 1052

Query: 121  MSYYLAIEVKQSEEGIFISQEQYTREILEKFNMINSKPV 160
            MSYYL IEVKQSEEGIFISQE+YTREILEKFNM+NSKPV
Sbjct: 1053 MSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPV 1091

[Close]

BLAST of Cmc01g0010451 vs. ExPASy TrEMBL
Match: A0A5A7V308 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00290 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 2.3e-74
Identity = 141/159 (88.68%), Postives = 148/159 (93.08%), Query Frame = 0


Query: 1    MDVKSVFLNGYLEEEVYLEQPPSYSVKGQEDKILKLNKTLSGLKQAPRMWNSRINKYFLD 60
            MDVKS FLNGYLEEEVYLEQPP YSVKGQEDK+LKL K L GLKQAPRMWNSRINKYFLD
Sbjct: 933  MDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLKKALYGLKQAPRMWNSRINKYFLD 992

Query: 61   NEYLRCLYEHSLCIKTDGHGDILVVCLYVNDLIITGNCASMFKDLKKAMTQEFKMTDIGL 120
            N YLRC YEHSL IK +GHGDILVVCLYV+DLI TGNCASMF+DLKKAMTQEF+MTDIGL
Sbjct: 993  NGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKKAMTQEFEMTDIGL 1052

Query: 121  MSYYLAIEVKQSEEGIFISQEQYTREILEKFNMINSKPV 160
            MSYYL IEVKQSEEGIFISQE+YTREILEKFNM+NSKPV
Sbjct: 1053 MSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPV 1091

[Close]

BLAST of Cmc01g0010451 vs. ExPASy TrEMBL
Match: A0A5D3D497 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00810 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 2.3e-74
Identity = 141/159 (88.68%), Postives = 148/159 (93.08%), Query Frame = 0


Query: 1    MDVKSVFLNGYLEEEVYLEQPPSYSVKGQEDKILKLNKTLSGLKQAPRMWNSRINKYFLD 60
            MDVKS FLNGYLEEEVYLEQPP YSVKGQEDK+LKL K L GLKQAPRMWNSRINKYFLD
Sbjct: 933  MDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLKKALYGLKQAPRMWNSRINKYFLD 992

Query: 61   NEYLRCLYEHSLCIKTDGHGDILVVCLYVNDLIITGNCASMFKDLKKAMTQEFKMTDIGL 120
            N YLRC YEHSL IK +GHGDILVVCLYV+DLI TGNCASMF+DLKKAMTQEF+MTDIGL
Sbjct: 993  NGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKKAMTQEFEMTDIGL 1052

Query: 121  MSYYLAIEVKQSEEGIFISQEQYTREILEKFNMINSKPV 160
            MSYYL IEVKQSEEGIFISQE+YTREILEKFNM+NSKPV
Sbjct: 1053 MSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPV 1091

[Close]

BLAST of Cmc01g0010451 vs. ExPASy TrEMBL
Match: A0A5D3D557 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold481G00080 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 2.3e-74
Identity = 141/159 (88.68%), Postives = 148/159 (93.08%), Query Frame = 0


Query: 1   MDVKSVFLNGYLEEEVYLEQPPSYSVKGQEDKILKLNKTLSGLKQAPRMWNSRINKYFLD 60
           MDVKS FLNGYLEEEVYLEQPP YSVKGQEDK+LKL K L GLKQAPRMWNSRINKYFLD
Sbjct: 373 MDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLKKALYGLKQAPRMWNSRINKYFLD 432

Query: 61  NEYLRCLYEHSLCIKTDGHGDILVVCLYVNDLIITGNCASMFKDLKKAMTQEFKMTDIGL 120
           N YLRC YEHSL IK +GHGDILVVCLYV+DLI TGNCASMF+DLKKAMTQEF+MTDIGL
Sbjct: 433 NGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKKAMTQEFEMTDIGL 492

Query: 121 MSYYLAIEVKQSEEGIFISQEQYTREILEKFNMINSKPV 160
           MSYYL IEVKQSEEGIFISQE+YTREILEKFNM+NSKPV
Sbjct: 493 MSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPV 531

[Close]

BLAST of Cmc01g0010451 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 94.4 bits (233), Expect = 9.3e-20
Identity = 49/165 (29.70%), Postives = 94/165 (56.97%), Query Frame = 0


Query: 1   MDVKSVFLNGYLEEEVYLEQPPSYSVKGQE----DKILKLNKTLSGLKQAPRMWNSRINK 60
           +D+ + FLNG L+EE+Y++ PP Y+ +  +    + +  L K++ GLKQA R W  + + 
Sbjct: 193 LDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSV 252

Query: 61  YFLDNEYLRCLYEHSLCIKTDGHGDILVVCLYVNDLIITGNCASMFKDLKKAMTQEFKMT 120
             +   +++   +H+  +K       L V +YV+D+II  N  +   +LK  +   FK+ 
Sbjct: 253 TLIGFGFVQSHSDHTYFLKITA-TLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLR 312

Query: 121 DIGLMSYYLAIEVKQSEEGIFISQEQYTREILEKFNMINSKPVTI 162
           D+G + Y+L +E+ +S  GI I Q +Y  ++L++  ++  KP ++
Sbjct: 313 DLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSV 356

[Close]

BLAST of Cmc01g0010451 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 58.2 bits (139), Expect = 7.4e-09
Identity = 25/78 (32.05%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 83  LVVCLYVNDLIITGNCASMFKDLKKAMTQEFKMTDIGLMSYYLAIEVKQSEEGIFISQEQ 142
           + + LYV+D+++TG+  ++   L   ++  F M D+G + Y+L I++K    G+F+SQ +
Sbjct: 1   MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTK 60

Query: 143 YTREILEKFNMINSKPVT 161
           Y  +IL    M++ KP++
Sbjct: 61  YAEQILNNAGMLDCKPMS 78

The following BLAST results are available for this feature:

BLAST of Cmc01g0010451 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK18362.1	4.7e-74	88.68	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYJ96309.1	4.7e-74	88.68	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK06895.1	4.7e-74	88.68	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK08113.1	4.7e-74	88.68	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK03241.1	4.7e-74	88.68	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc01g0010451 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	3.5e-27	35.80	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	9.4e-25	35.85	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.4e-23	35.63	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P04146	1.3e-21	33.54	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P25600	4.7e-16	29.41	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc01g0010451 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V3X9	2.3e-74	88.68	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SJX6	2.3e-74	88.68	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V308	2.3e-74	88.68	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3D497	2.3e-74	88.68	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3D557	2.3e-74	88.68	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc01g0010451 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	9.3e-20	29.70	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	7.4e-09	32.05	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 26..46
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 1..159
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..161 e-value: 2.9E-47 score: 161.3
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0010451.1	Cmc01g0010451.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding