Cmc01g0010361 (gene) Melon (Charmono) v1.1

Overview
NameCmc01g0010361
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionUnknown protein
LocationCMiso1.1chr01: 5241747 .. 5243891 (+)
RNA-Seq ExpressionCmc01g0010361
SyntenyCmc01g0010361
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTTATTATAAACATTATTAACTGCAGTCGTAACTGAAGGGTCCTTGATTATACTTTACTGTTTTGCAGACAATAAGATATAATTTTTTTATAAAAAATAAAAAGTTACAGTAATTGTTTGTGTTCGATATTTTTTTAACCTTCGATTCAAGACTAAAATGACGATAAAGGGAAGTTACAAATATGCAGTTAGTTGGAATGAAAAAAAAAAAAAAACATTCAAATTGAAATCTTAAAACACAGATTAAATCCTATAGTTGACTTACTTAGTATTCCACTAGAAAGAAAAGGACACATGTCCAAATCATTTAACTTCAAAACAAACAAAATCACCTCTAAGTTTGAGGCTTTAATGGCTTTAAAAGGGATAATAATAAATACAATACATACCAAAATCAACCCTTACCAAAATAAACTTCATCACGAAAATTACTAATTTTTCCTATTTAATTTTCCCTTTTTTTCTTTTTATATTTTTTTATTATTATACCTCTTCTTTCTGTCCCTATTAAAAGAGTATTAATTAAAAGACAAATGTCACAAATCTCATCTCATGGTCAGAGATCACGTGCACCCACGTGGAGCAAACCCGATCCGAGAACCCGCCAAATCGTACACAACCCGAAATCCTTGCTGTTGAATGTTCCCAATAATCGACAAACCCGAAATAGTACCCGCAAACGCAAAGCAAAAACTCCCATTCTCGTCCACCGGAATCAAATAATTCGTCGCCGGTAACGGCATGTCGGCTCCCCGAAAATGCAACACCACTGTCGGCACCTTCACCGACGACTGACCCGACAAGTCGTAACACGTATCAAACAATGAAAACTCCGGCCCTCTTTTCAAATGTCTCGCTCCGGCACGAAACGCGTCGCGAAGAGCCGTGTAAGCTGGCCGAGTCAGACGGGTCACGGACGTACCGGAATCGATGATGACACCGCCGTTGCCGGCAGAATCGAGCTTGAAGAGAGAAGGGTAAACGCCACGAACTCGGACTCCACCGACGCTGATTCCGATAAGTTCAACGTAATAGAACGTGTCTAATTTCGGGTTCCTAATTAAAGGAGTGAACCGGGCGAGTCGGGAAATTGCCGCATCGCCGAAAACCATGGAGGACGGTTTAGATGAAGCGGACCGGTCTACCAAACAGTAAGAGAATTTACGATTGAACCGGATTCCAGTTTGTGAAGGGAAAGACAACCGGCCTCTACCGAGACCCAACAAACCGGCGGCTCCGACGAACAAACCCTCGTTATGGTGGCCGCAGCCGAGGGCGACTTTAGCGATTTTATTGCCGCGAAACGTGAGGGTTTCGGTGGCGAAATCGCCGGTGGTGAAGGAGCCGTCGCCGTAAGAGACTTGGTAGAGGCAGGTGTGGCGGCGGGTGCTGCAGCCGGAGGAATCGAGACGGCGGCAGAGAGGGGAGGAACAGGGGATTCCGGCGAAGGATTTGGATTTATATGGGTTGAAAATGGGGTCAGATTGGGAGTAGCATTTGCGACAAGGGGAGCATTGGAGCCAAACGACGTCGCTGCCGGTGTCGAGGACCATGTAAAGGTATCTAGGAGGGGTTCCAACGCCAAGGCGGGTGAAGTATTCGCCACTGCCTTGGGCGAGACCGGAGATGACGGAGCTGCTGAAGCCAGGGGCGGCGCGTGAGGTGAGAGCGTGGACGCGGAGGGCGTCGCGGTGAAGTCTGAGATTGAAGAGATCGGTGGGGGTTTTATTGAGAGAGAGTGAGTCCAGATGGTGGAGATCAAGCGTGAGGGCGGCGGCGGGGGAGGATTGGAGGGATTCGGAGTCAGGGAAGAGGGAAAGGGGAGAGGGGGTTGGAAGAGAGCGGAGAGTTAGGGTCTGAAACTCCGATGCGGCGGAGGAGATGAAATAGAAGAGGAGGAGATATTTGAGAATAGAATGGAAATCCATTATAGGGAGAGGAATTGAGTGTGATTTTTGTGGGAGAAAAAGAGTAAAAGAGGAGATTATAATGAAAAGGAAAAGAGAGAGATGAGCGGTTTGTGCGGTACTTTTACTTTTACAAGTGGGGGATCTCCAAAATGTAATGCACAGCTCATGTTTTTTTTTTTTTTTCTTTTTGGTGGTGCGGTGATTTCATCATTCAATTTCTTTTTCTTTTTCAAC

mRNA sequence

AGTTATTATAAACATTATTAACTGCAGTCGTAACTGAAGGGTCCTTGATTATACTTTACTGTTTTGCAGACAATAAGATATAATTTTTTTATAAAAAATAAAAAGTTACAGTAATTGTTTGTGTTCGATATTTTTTTAACCTTCGATTCAAGACTAAAATGACGATAAAGGGAAGTTACAAATATGCAGTTAGTTGGAATGAAAAAAAAAAAAAAACATTCAAATTGAAATCTTAAAACACAGATTAAATCCTATAGTTGACTTACTTAGTATTCCACTAGAAAGAAAAGGACACATGTCCAAATCATTTAACTTCAAAACAAACAAAATCACCTCTAAGTTTGAGGCTTTAATGGCTTTAAAAGGGATAATAATAAATACAATACATACCAAAATCAACCCTTACCAAAATAAACTTCATCACGAAAATTACTAATTTTTCCTATTTAATTTTCCCTTTTTTTCTTTTTATATTTTTTTATTATTATACCTCTTCTTTCTGTCCCTATTAAAAGAGTATTAATTAAAAGACAAATGTCACAAATCTCATCTCATGGTCAGAGATCACGTGCACCCACGTGGAGCAAACCCGATCCGAGAACCCGCCAAATCGTACACAACCCGAAATCCTTGCTGTTGAATGTTCCCAATAATCGACAAACCCGAAATAGTACCCGCAAACGCAAAGCAAAAACTCCCATTCTCGTCCACCGGAATCAAATAATTCGTCGCCGGTAACGGCATGTCGGCTCCCCGAAAATGCAACACCACTGTCGGCACCTTCACCGACGACTGACCCGACAAGTCGTAACACGTATCAAACAATGAAAACTCCGGCCCTCTTTTCAAATGTCTCGCTCCGGCACGAAACGCGTCGCGAAGAGCCGTGTAAGCTGGCCGAGTCAGACGGGTCACGGACGTACCGGAATCGATGATGACACCGCCGTTGCCGGCAGAATCGAGCTTGAAGAGAGAAGGGTAAACGCCACGAACTCGGACTCCACCGACGCTGATTCCGATAAGTTCAACGTAATAGAACGTGTCTAATTTCGGGTTCCTAATTAAAGGAGTGAACCGGGCGAGTCGGGAAATTGCCGCATCGCCGAAAACCATGGAGGACGGTTTAGATGAAGCGGACCGGTCTACCAAACAGTAAGAGAATTTACGATTGAACCGGATTCCAGTTTGTGAAGGGAAAGACAACCGGCCTCTACCGAGACCCAACAAACCGGCGGCTCCGACGAACAAACCCTCGTTATGGTGGCCGCAGCCGAGGGCGACTTTAGCGATTTTATTGCCGCGAAACGTGAGGGTTTCGGTGGCGAAATCGCCGGTGGTGAAGGAGCCGTCGCCGTAAGAGACTTGGTAGAGGCAGGTGTGGCGGCGGGTGCTGCAGCCGGAGGAATCGAGACGGCGGCAGAGAGGGGAGGAACAGGGGATTCCGGCGAAGGATTTGGATTTATATGGGTTGAAAATGGGGTCAGATTGGGAGTAGCATTTGCGACAAGGGGAGCATTGGAGCCAAACGACGTCGCTGCCGGTGTCGAGGACCATGTAAAGGTATCTAGGAGGGGTTCCAACGCCAAGGCGGGTGAAGTATTCGCCACTGCCTTGGGCGAGACCGGAGATGACGGAGCTGCTGAAGCCAGGGGCGGCGCGTGAGGTGAGAGCGTGGACGCGGAGGGCGTCGCGGTGAAGTCTGAGATTGAAGAGATCGGTGGGGGTTTTATTGAGAGAGAGTGAGTCCAGATGGTGGAGATCAAGCGTGAGGGCGGCGGCGGGGGAGGATTGGAGGGATTCGGAGTCAGGGAAGAGGGAAAGGGGAGAGGGGGTTGGAAGAGAGCGGAGAGTTAGGGTCTGAAACTCCGATGCGGCGGAGGAGATGAAATAGAAGAGGAGGAGATATTTGAGAATAGAATGGAAATCCATTATAGGGAGAGGAATTGAGTGTGATTTTTGTGGGAGAAAAAGAGTAAAAGAGGAGATTATAATGAAAAGGAAAAGAGAGAGATGAGCGGTTTGTGCGGTACTTTTACTTTTACAAGTGGGGGATCTCCAAAATGTAATGCACAGCTCATGTTTTTTTTTTTTTTTCTTTTTGGTGGTGCGGTGATTTCATCATTCAATTTCTTTTTCTTTTTCAAC

Coding sequence (CDS)

ATGGTGGCCGCAGCCGAGGGCGACTTTAGCGATTTTATTGCCGCGAAACGTGAGGGTTTCGGTGGCGAAATCGCCGGTGGTGAAGGAGCCGTCGCCGTAAGAGACTTGGTAGAGGCAGGTGTGGCGGCGGGTGCTGCAGCCGGAGGAATCGAGACGGCGGCAGAGAGGGGAGGAACAGGGGATTCCGGCGAAGGATTTGGATTTATATGGGTTGAAAATGGGGTCAGATTGGGAGTAGCATTTGCGACAAGGGGAGCATTGGAGCCAAACGACGTCGCTGCCGGTGTCGAGGACCATGTAAAGGTATCTAGGAGGGGTTCCAACGCCAAGGCGGGTGAAGTATTCGCCACTGCCTTGGGCGAGACCGGAGATGACGGAGCTGCTGAAGCCAGGGGCGGCGCGTGA

Protein sequence

MVAAAEGDFSDFIAAKREGFGGEIAGGEGAVAVRDLVEAGVAAGAAAGGIETAAERGGTGDSGEGFGFIWVENGVRLGVAFATRGALEPNDVAAGVEDHVKVSRRGSNAKAGEVFATALGETGDDGAAEARGGA
Homology
BLAST of Cmc01g0010361 vs. NCBI nr
Match: XP_011465823.1 (PREDICTED: glycine-rich cell wall structural protein 1-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 121.3 bits (303), Expect = 6.3e-24
Identity = 75/133 (56.39%), Postives = 85/133 (63.91%), Query Frame = 0

Query: 1   MVAAAEGDFSDFIAAKREGFGGEIAGGEGAVAVRDLVEAGVAAGAAAGGIETAAERGGTG 60
           +VA AEGDF DF AA+ EGFGGE+                    A AGG+E AAERGG  
Sbjct: 23  VVAVAEGDFGDFGAAEGEGFGGEV--------------------AEAGGVEVAAERGGAR 82

Query: 61  DSGEGFGFIWVENGVRLGVAFATRGALEPNDVAAGVEDHVKVSRRGSNAKAGEVFATALG 120
           + GEG GF  VEN V LGVA  TRGALEP+D+ AGVEDHVKV    ++A AGEV + ALG
Sbjct: 83  EGGEGGGFSRVENRVCLGVAVFTRGALEPDDIGAGVEDHVKVFWGRADADAGEVLSAALG 135

Query: 121 ETGDDGAAEARGG 134
           E GDDG AE  GG
Sbjct: 143 EAGDDGGAEPGGG 135

BLAST of Cmc01g0010361 vs. NCBI nr
Match: XP_011463556.1 (PREDICTED: spidroin-1-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 101.3 bits (251), Expect = 6.7e-18
Identity = 66/133 (49.62%), Postives = 77/133 (57.89%), Query Frame = 0

Query: 1   MVAAAEGDFSDFIAAKREGFGGEIAGGEGAVAVRDLVEAGVAAGAAAGGIETAAERGGTG 60
           +VAAAEGDF DF AA+                              AGG++ A ERGG  
Sbjct: 23  VVAAAEGDFGDFGAAE------------------------------AGGVKVATERGGAR 82

Query: 61  DSGEGFGFIWVENGVRLGVAFATRGALEPNDVAAGVEDHVKVSRRGSNAKAGEVFATALG 120
           + GEG GF  V+N V LGVA  TRGALEP+D+ AGVEDHV+V    ++A AGEV A ALG
Sbjct: 83  EGGEGGGFSRVKNRVGLGVAAFTRGALEPDDIGAGVEDHVEVFGGRADADAGEVLAAALG 125

Query: 121 ETGDDGAAEARGG 134
           E GDDG AE  GG
Sbjct: 143 EAGDDGGAEPGGG 125

BLAST of Cmc01g0010361 vs. NCBI nr
Match: KYP71940.1 (hypothetical protein KK1_011220, partial [Cajanus cajan])

HSP 1 Score: 81.6 bits (200), Expect = 5.5e-12
Identity = 52/81 (64.20%), Postives = 57/81 (70.37%), Query Frame = 0

Query: 54  AERGGTGDSGEGFGFIWVENGVRLGVAFATRGALEPNDVAAGVEDHVKVSRRGSNAKAGE 113
           AE G  GDSGEG GF  VENGV LGVAFA RGALEP+ VA+ V+DHV VS   S A A E
Sbjct: 1   AEWGPAGDSGEGSGFGGVENGVGLGVAFAARGALEPDYVASRVQDHVHVSSGCSYAYARE 60

Query: 114 VFATALGETGDDGAAEARGGA 135
           V A ALG+   DGAAEA  G+
Sbjct: 61  VLAAALGQARYDGAAEAGPGS 81

BLAST of Cmc01g0010361 vs. NCBI nr
Match: EFJ04226.1 (hypothetical protein SELMODRAFT_432611, partial [Selaginella moellendorffii])

HSP 1 Score: 74.3 bits (181), Expect = 8.8e-10
Identity = 54/124 (43.55%), Postives = 72/124 (58.06%), Query Frame = 0

Query: 6   EGDFSDFIAAKREGFGGEIAGGEGAVAVRDLVEAGVAAGAAAGGIETAAERGGTGDSGEG 65
           +G+  D +  + +  GGE+   EGA+AVRDLV+A V    AA   E  A+R   GD  E 
Sbjct: 1   DGNRVDSVGTEGKSLGGELTDSEGAIAVRDLVQALVP--PAAADQELLAQRAPAGDGLES 60

Query: 66  FGFIWVENGVRLGVAFATRGALEPNDVAAGVEDHVKVSRRGSNAKAGEVFATALGETGDD 125
            G   +E  VRL VA   R ALEP ++A+GV +HV  SRR S+++  EV ATA+GE G  
Sbjct: 61  RGEGRIEQRVRLAVAALARQALEPENIASGVGNHVDGSRRCSDSERDEVLATAVGEAGSQ 120

Query: 126 GAAE 130
              E
Sbjct: 121 RRLE 122

BLAST of Cmc01g0010361 vs. NCBI nr
Match: CAB3474099.1 (unnamed protein product [Digitaria exilis])

HSP 1 Score: 67.0 bits (162), Expect = 1.4e-07
Identity = 63/137 (45.99%), Postives = 74/137 (54.01%), Query Frame = 0

Query: 1   MVAAAEGDF----SDFIAAKREGFGGEIAGGEGAVAVRDLVEAGVAAGAAAGGIE-TAAE 60
           +VAA E D     +  +    E  GGE+AGG GAVAV D V+A   AG AAG  E  AA 
Sbjct: 107 VVAAPERDVVVGDAVVVGEDDEPVGGEVAGGGGAVAVDDGVDAPARAGVAAGVAEHAAAP 166

Query: 61  RGGTGD---SGEGFGFIWVENGVRLGVAFATRGALEPNDVAAGVEDHVKVSRRGSNAKAG 120
           R G GD    G G     VE G  L VA A R ALEP++VAAGV+D  +   R ++A   
Sbjct: 167 RRGAGDPAVRGGGAPARVVERG-ELAVAAAARRALEPDEVAAGVDDDERARGRVADADGR 226

Query: 121 EVFATALGETGDDGAAE 130
           EV A    E  DDG AE
Sbjct: 227 EVLAAVEREARDDGGAE 242

BLAST of Cmc01g0010361 vs. ExPASy TrEMBL
Match: A0A151TY14 (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_011220 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.7e-12
Identity = 52/81 (64.20%), Postives = 57/81 (70.37%), Query Frame = 0

Query: 54  AERGGTGDSGEGFGFIWVENGVRLGVAFATRGALEPNDVAAGVEDHVKVSRRGSNAKAGE 113
           AE G  GDSGEG GF  VENGV LGVAFA RGALEP+ VA+ V+DHV VS   S A A E
Sbjct: 1   AEWGPAGDSGEGSGFGGVENGVGLGVAFAARGALEPDYVASRVQDHVHVSSGCSYAYARE 60

Query: 114 VFATALGETGDDGAAEARGGA 135
           V A ALG+   DGAAEA  G+
Sbjct: 61  VLAAALGQARYDGAAEAGPGS 81

BLAST of Cmc01g0010361 vs. ExPASy TrEMBL
Match: D8TGJ2 (Uncharacterized protein (Fragment) OS=Selaginella moellendorffii OX=88036 GN=SELMODRAFT_432611 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 4.2e-10
Identity = 54/124 (43.55%), Postives = 72/124 (58.06%), Query Frame = 0

Query: 6   EGDFSDFIAAKREGFGGEIAGGEGAVAVRDLVEAGVAAGAAAGGIETAAERGGTGDSGEG 65
           +G+  D +  + +  GGE+   EGA+AVRDLV+A V    AA   E  A+R   GD  E 
Sbjct: 1   DGNRVDSVGTEGKSLGGELTDSEGAIAVRDLVQALVP--PAAADQELLAQRAPAGDGLES 60

Query: 66  FGFIWVENGVRLGVAFATRGALEPNDVAAGVEDHVKVSRRGSNAKAGEVFATALGETGDD 125
            G   +E  VRL VA   R ALEP ++A+GV +HV  SRR S+++  EV ATA+GE G  
Sbjct: 61  RGEGRIEQRVRLAVAALARQALEPENIASGVGNHVDGSRRCSDSERDEVLATAVGEAGSQ 120

Query: 126 GAAE 130
              E
Sbjct: 121 RRLE 122

BLAST of Cmc01g0010361 vs. ExPASy TrEMBL
Match: A0A498K1T4 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_021686 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 9.8e-07
Identity = 35/63 (55.56%), Postives = 40/63 (63.49%), Query Frame = 0

Query: 70  WVENGVRLGVAFATRGALEPNDVAAGVEDHVKVSRRGSNAKAGEVFATALGETGDDGAAE 129
           WVEN VRL +   T  ALEP DV AGVE HV+  RR +++  GEV A AL  TGDDG  E
Sbjct: 26  WVENRVRLLILIGTGVALEPVDVGAGVEHHVERLRRSADSYPGEVLAAALANTGDDGGEE 85

Query: 130 ARG 133
             G
Sbjct: 86  VLG 88

BLAST of Cmc01g0010361 vs. ExPASy TrEMBL
Match: A0A371H723 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_18493 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.0e-04
Identity = 44/94 (46.81%), Postives = 56/94 (59.57%), Query Frame = 0

Query: 16  KREGFGGEIAGGEGAVAVRDLVEAGVAAGAAAGGIETAAERGGTGDSGEGFGFIWVENGV 75
           +REG  GE A G G VAV DLV A   +  AAG ++ AA+ GG GD+G G     +EN V
Sbjct: 40  RREGLEGERAFGVGPVAVGDLVAA--PSLVAAGVVDVAADGGGAGDAGVGGRIGRIENRV 99

Query: 76  RLGVAFATRGALEPNDVAAGVEDHVKVSRRGSNA 110
            L VA   R AL+P  VAA ++ HV VS   S++
Sbjct: 100 GLVVALGARFALDPYYVAARIDYHVLVSGWASHS 131

BLAST of Cmc01g0010361 vs. ExPASy TrEMBL
Match: A0A540NGL3 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_004710 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.7e-04
Identity = 32/55 (58.18%), Postives = 34/55 (61.82%), Query Frame = 0

Query: 71  VENGVRLGVAFATRGALEPNDVAAGVEDHVKVSRRGSNAKAGEVFATALGETGDD 126
           VEN V+L VA   R ALEP DVA GVE HV+  R   NA  GEV A AL   GDD
Sbjct: 10  VENRVKLLVAIGARVALEPVDVAGGVEHHVERLRWSPNADPGEVLAAALANVGDD 64

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011465823.16.3e-2456.39PREDICTED: glycine-rich cell wall structural protein 1-like [Fragaria vesca subs... [more]
XP_011463556.16.7e-1849.62PREDICTED: spidroin-1-like [Fragaria vesca subsp. vesca][more]
KYP71940.15.5e-1264.20hypothetical protein KK1_011220, partial [Cajanus cajan][more]
EFJ04226.18.8e-1043.55hypothetical protein SELMODRAFT_432611, partial [Selaginella moellendorffii][more]
CAB3474099.11.4e-0745.99unnamed protein product [Digitaria exilis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A151TY142.7e-1264.20Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_011220 PE=4 S... [more]
D8TGJ24.2e-1043.55Uncharacterized protein (Fragment) OS=Selaginella moellendorffii OX=88036 GN=SEL... [more]
A0A498K1T49.8e-0755.56Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_021686 PE=4 SV=1[more]
A0A371H7232.0e-0446.81Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_18493 P... [more]
A0A540NGL32.7e-0458.18Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_004710 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc01g0010361.1Cmc01g0010361.1mRNA