Cmc01g0009791 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0009791
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3/gypsy retrotransposon protein
Location	CMiso1.1chr01: 4388743 .. 4389165 (+)
RNA-Seq Expression	Cmc01g0009791
Synteny	Cmc01g0009791

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGATGAAGACATTGAAAAAACTGCCTTTAGAACTCATCAAGGCCACTATGAGTTCTTGGTCATGCCATTTGAGCTAACCAATGCACCAGCCACTTTTCAAGCATTGATGAATGCAGTCTTTAAACCATACTTGAGAAAATTTGTATTGGTATTTTTTGATGATATATTGGTTTACAGTAAGAATGAGGCTGATCATGTGAAGTACATGGGAGTGGTATTATCCGTTTTGAGGAAACATGAATTATACGCAAACAAAAAGAAATGCAACTTCGCTCAGCATAAGATAGAATATTTGGGACACGTTATATCGGGAGAAGGAGTTGAAGTCGATCCAAAGAAGATTAAGTCAGTAGCTGATTGGCCAAAACCTACGAATATTAGAGAAGTCAGAGGTTTTCTTGGGCTAACAGGCTACTAA

mRNA sequence

ATGGCTGATGAAGACATTGAAAAAACTGCCTTTAGAACTCATCAAGGCCACTATGAGTTCTTGGTCATGCCATTTGAGCTAACCAATGCACCAGCCACTTTTCAAGCATTGATGAATGCAGTCTTTAAACCATACTTGAGAAAATTTGTATTGGTATTTTTTGATGATATATTGGTTTACAGTAAGAATGAGGCTGATCATGTGAAGTACATGGGAGTGGTATTATCCGTTTTGAGGAAACATGAATTATACGCAAACAAAAAGAAATGCAACTTCGCTCAGCATAAGATAGAATATTTGGGACACGTTATATCGGGAGAAGGAGTTGAAGTCGATCCAAAGAAGATTAAGTCAGTAGCTGATTGGCCAAAACCTACGAATATTAGAGAAGTCAGAGGTTTTCTTGGGCTAACAGGCTACTAA

Coding sequence (CDS)

ATGGCTGATGAAGACATTGAAAAAACTGCCTTTAGAACTCATCAAGGCCACTATGAGTTCTTGGTCATGCCATTTGAGCTAACCAATGCACCAGCCACTTTTCAAGCATTGATGAATGCAGTCTTTAAACCATACTTGAGAAAATTTGTATTGGTATTTTTTGATGATATATTGGTTTACAGTAAGAATGAGGCTGATCATGTGAAGTACATGGGAGTGGTATTATCCGTTTTGAGGAAACATGAATTATACGCAAACAAAAAGAAATGCAACTTCGCTCAGCATAAGATAGAATATTTGGGACACGTTATATCGGGAGAAGGAGTTGAAGTCGATCCAAAGAAGATTAAGTCAGTAGCTGATTGGCCAAAACCTACGAATATTAGAGAAGTCAGAGGTTTTCTTGGGCTAACAGGCTACTAA

Protein sequence

MADEDIEKTAFRTHQGHYEFLVMPFELTNAPATFQALMNAVFKPYLRKFVLVFFDDILVYSKNEADHVKYMGVVLSVLRKHELYANKKKCNFAQHKIEYLGHVISGEGVEVDPKKIKSVADWPKPTNIREVRGFLGLTGY

Homology

[Close]

BLAST of Cmc01g0009791 vs. NCBI nr
Match: KAA0059263.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK03378.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 272.7 bits (696), Expect = 1.8e-69
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MADEDIEKTAFRTHQGHYEFLVMPFELTNAPATFQALMNAVFKPYLRKFVLVFFDDILVY 60
           MADEDIEKTAFRTHQGHYEFLVMPFELTNAPATFQALMNAVFKPYLRKFVLVFFDDILVY
Sbjct: 447 MADEDIEKTAFRTHQGHYEFLVMPFELTNAPATFQALMNAVFKPYLRKFVLVFFDDILVY 506

Query: 61  SKNEADHVKYMGVVLSVLRKHELYANKKKCNFAQHKIEYLGHVISGEGVEVDPKKIKSVA 120
           SKNEADHVKYMGVVLSVLRKHELYANKKKCNFAQHKIEYLGHVISGEGVEVDPKKIKSVA
Sbjct: 507 SKNEADHVKYMGVVLSVLRKHELYANKKKCNFAQHKIEYLGHVISGEGVEVDPKKIKSVA 566

Query: 121 DWPKPTNIREVR 133
           DWPKPTNIREVR
Sbjct: 567 DWPKPTNIREVR 578

[Close]

BLAST of Cmc01g0009791 vs. NCBI nr
Match: KAA0067574.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ97182.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 252.3 bits (643), Expect = 2.5e-63
Identity = 115/140 (82.14%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 1   MADEDIEKTAFRTHQGHYEFLVMPFELTNAPATFQALMNAVFKPYLRKFVLVFFDDILVY 60
           M D+DIEKTAFRTH+GHYEFLVMPF LTNAPATFQAL+N +FKP+LRKFVLVFFDDIL+Y
Sbjct: 362 MGDKDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQALVNTIFKPFLRKFVLVFFDDILIY 421

Query: 61  SKNEADHVKYMGVVLSVLRKHELYANKKKCNFAQHKIEYLGHVISGEGVEVDPKKIKSVA 120
           SKNEADHV +MG VLS+LR+HELYAN+KKCNFAQ KIEYLGHVISGEGV VDP+KIK++ 
Sbjct: 422 SKNEADHVLHMGKVLSILRQHELYANQKKCNFAQKKIEYLGHVISGEGVAVDPEKIKAIT 481

Query: 121 DWPKPTNIREVRGFLGLTGY 141
           +WP+PTNI+E+RGFLGLTGY
Sbjct: 482 NWPQPTNIKEIRGFLGLTGY 501

[Close]

BLAST of Cmc01g0009791 vs. NCBI nr
Match: KAA0033837.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK20583.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 251.5 bits (641), Expect = 4.2e-63
Identity = 117/140 (83.57%), Postives = 131/140 (93.57%), Query Frame = 0


Query: 1   MADEDIEKTAFRTHQGHYEFLVMPFELTNAPATFQALMNAVFKPYLRKFVLVFFDDILVY 60
           MADEDIEKT FRTH+GHYEFLVM F LTNAPATFQALMNA+FKP+LRK VLVFFDDILVY
Sbjct: 658 MADEDIEKTTFRTHEGHYEFLVMLFGLTNAPATFQALMNAIFKPFLRKLVLVFFDDILVY 717

Query: 61  SKNEADHVKYMGVVLSVLRKHELYANKKKCNFAQHKIEYLGHVISGEGVEVDPKKIKSVA 120
           SKNE DH+ ++G VLS+LRKH+LYAN+KKC+FAQHKIEYLGHVISGEGVEVDP+KIKS+ 
Sbjct: 718 SKNENDHLVHLGKVLSILRKHKLYANRKKCSFAQHKIEYLGHVISGEGVEVDPEKIKSIV 777

Query: 121 DWPKPTNIREVRGFLGLTGY 141
           +WP PTNI+EVRGFLGLTGY
Sbjct: 778 EWPVPTNIKEVRGFLGLTGY 797

[Close]

BLAST of Cmc01g0009791 vs. NCBI nr
Match: KAA0064684.1 (tetratricopeptide repeat protein SKI3 [Cucumis melo var. makuwa] >TYK19906.1 tetratricopeptide repeat protein SKI3 [Cucumis melo var. makuwa])

HSP 1 Score: 249.6 bits (636), Expect = 1.6e-62
Identity = 114/140 (81.43%), Postives = 130/140 (92.86%), Query Frame = 0


Query: 1   MADEDIEKTAFRTHQGHYEFLVMPFELTNAPATFQALMNAVFKPYLRKFVLVFFDDILVY 60
           M ++DIEKTAFRTH+GHYEFLVMPF LTNAPATFQALMN +FKP+LRKFVLVFFDDIL+Y
Sbjct: 546 MVEKDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNTIFKPFLRKFVLVFFDDILIY 605

Query: 61  SKNEADHVKYMGVVLSVLRKHELYANKKKCNFAQHKIEYLGHVISGEGVEVDPKKIKSVA 120
           SKN  DHV++M  VLSVLR+HELYANKKKC+FAQ K+EYLGH++SGEGVEVDP+KIKS+ 
Sbjct: 606 SKNTVDHVEHMRKVLSVLREHELYANKKKCSFAQQKVEYLGHIMSGEGVEVDPEKIKSIT 665

Query: 121 DWPKPTNIREVRGFLGLTGY 141
            WPKPTNI+EVRGFLGLTGY
Sbjct: 666 KWPKPTNIKEVRGFLGLTGY 685

[Close]

BLAST of Cmc01g0009791 vs. NCBI nr
Match: KAA0063978.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 247.7 bits (631), Expect = 6.1e-62
Identity = 114/140 (81.43%), Postives = 129/140 (92.14%), Query Frame = 0


Query: 1   MADEDIEKTAFRTHQGHYEFLVMPFELTNAPATFQALMNAVFKPYLRKFVLVFFDDILVY 60
           MADEDIEKTAFRTH+GHYEFLVMPF LTNAPATFQALMNA+FKP+LRKFVLVFFDDILVY
Sbjct: 709 MADEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNAIFKPFLRKFVLVFFDDILVY 768

Query: 61  SKNEADHVKYMGVVLSVLRKHELYANKKKCNFAQHKIEYLGHVISGEGVEVDPKKIKSVA 120
           S+NE +HV ++ +VL VLR+HELYANKKKC FAQ KI YLGHVISGEGV VDP+KIK++ 
Sbjct: 769 SRNEKEHVLHLEMVLKVLRQHELYANKKKCQFAQEKIGYLGHVISGEGVAVDPEKIKAIC 828

Query: 121 DWPKPTNIREVRGFLGLTGY 141
           DWP+PTN++E RGFLGLTGY
Sbjct: 829 DWPRPTNVKETRGFLGLTGY 848

[Close]

BLAST of Cmc01g0009791 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 5.2e-32
Identity = 63/140 (45.00%), Postives = 93/140 (66.43%), Query Frame = 0


Query: 1   MADEDIEKTAFRTHQGHYEFLVMPFELTNAPATFQALMNAVFKPYLRKFVLVFFDDILVY 60
           M  E + KTAF T  GHYE+L MPF L NAPATFQ  MN + +P L K  LV+ DDI+V+
Sbjct: 312 MDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVF 371

Query: 61  SKNEADHVKYMGVVLSVLRKHELYANKKKCNFAQHKIEYLGHVISGEGVEVDPKKIKSVA 120
           S +  +H++ +G+V   L K  L     KC F + +  +LGHV++ +G++ +P+KI+++ 
Sbjct: 372 STSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQ 431

Query: 121 DWPKPTNIREVRGFLGLTGY 141
            +P PT  +E++ FLGLTGY
Sbjct: 432 KYPIPTKPKEIKAFLGLTGY 451

[Close]

BLAST of Cmc01g0009791 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.6e-31
Identity = 61/140 (43.57%), Postives = 91/140 (65.00%), Query Frame = 0


Query: 1   MADEDIEKTAFRTHQGHYEFLVMPFELTNAPATFQALMNAVFKPYLRKFVLVFFDDILVY 60
           M +E I KTAF T  GHYE+L MPF L NAPATFQ  MN + +P L K  LV+ DDI+++
Sbjct: 311 MDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIF 370

Query: 61  SKNEADHVKYMGVVLSVLRKHELYANKKKCNFAQHKIEYLGHVISGEGVEVDPKKIKSVA 120
           S +  +H+  + +V + L    L     KC F + +  +LGH+++ +G++ +P K+K++ 
Sbjct: 371 STSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIV 430

Query: 121 DWPKPTNIREVRGFLGLTGY 141
            +P PT  +E+R FLGLTGY
Sbjct: 431 SYPIPTKDKEIRAFLGLTGY 450

[Close]

BLAST of Cmc01g0009791 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.4e-29
Identity = 56/140 (40.00%), Postives = 97/140 (69.29%), Query Frame = 0


Query: 1   MADEDIEKTAFRTHQGHYEFLVMPFELTNAPATFQALMNAVFKPYLRKFVLVFFDDILVY 60
           M + DI KTAF T  G YEFL +PF L NAPA FQ +++ + + ++ K   V+ DDI+V+
Sbjct: 228 MKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVF 287

Query: 61  SKNEADHVKYMGVVLSVLRKHELYANKKKCNFAQHKIEYLGHVISGEGVEVDPKKIKSVA 120
           S++   H K + +VL+ L K  L  N +K +F   ++E+LG++++ +G++ DPKK+++++
Sbjct: 288 SEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAIS 347

Query: 121 DWPKPTNIREVRGFLGLTGY 141
           + P PT+++E++ FLG+T Y
Sbjct: 348 EMPPPTSVKELKRFLGMTSY 367

[Close]

BLAST of Cmc01g0009791 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.1e-26
Identity = 52/140 (37.14%), Postives = 91/140 (65.00%), Query Frame = 0


Query: 1   MADEDIEKTAFRTHQGHYEFLVMPFELTNAPATFQALMNAVFKPYLRKFVLVFFDDILVY 60
           +A+ D EKT+F  + G YEF  +PF L NA + FQ  ++ V +  + K   V+ DD++++
Sbjct: 287 LAEHDREKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIF 346

Query: 61  SKNEADHVKYMGVVLSVLRKHELYANKKKCNFAQHKIEYLGHVISGEGVEVDPKKIKSVA 120
           S+NE+DHV+++  VL  L    +  +++K  F +  +EYLG ++S +G + DP+K+K++ 
Sbjct: 347 SENESDHVRHIDTVLKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQ 406

Query: 121 DWPKPTNIREVRGFLGLTGY 141
           ++P+P  + +VR FLGL  Y
Sbjct: 407 EYPEPDCVYKVRSFLGLASY 426

[Close]

BLAST of Cmc01g0009791 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 7.5e-23
Identity = 52/136 (38.24%), Postives = 82/136 (60.29%), Query Frame = 0


Query: 5   DIEKTAFRTHQGHYEFLVMPFELTNAPATFQALMNAVFKPYLRKFVLVFFDDILVYSKNE 64
           D  K AFR  +G +E+LVMP+ ++ APA FQ  +N +        V+ + DDIL++SK+E
Sbjct: 516 DEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSE 575

Query: 65  ADHVKYMGVVLSVLRKHELYANKKKCNFAQHKIEYLGHVISGEGVEVDPKKIKSVADWPK 124
           ++HVK++  VL  L+   L  N+ KC F Q +++++G+ IS +G     + I  V  W +
Sbjct: 576 SEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQ 635

Query: 125 PTNIREVRGFLGLTGY 141
           P N +E+R FLG   Y
Sbjct: 636 PKNRKELRQFLGSVNY 651

[Close]

BLAST of Cmc01g0009791 vs. ExPASy TrEMBL
Match: A0A5D3BWP0 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84663G00130 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 8.5e-70
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MADEDIEKTAFRTHQGHYEFLVMPFELTNAPATFQALMNAVFKPYLRKFVLVFFDDILVY 60
           MADEDIEKTAFRTHQGHYEFLVMPFELTNAPATFQALMNAVFKPYLRKFVLVFFDDILVY
Sbjct: 447 MADEDIEKTAFRTHQGHYEFLVMPFELTNAPATFQALMNAVFKPYLRKFVLVFFDDILVY 506

Query: 61  SKNEADHVKYMGVVLSVLRKHELYANKKKCNFAQHKIEYLGHVISGEGVEVDPKKIKSVA 120
           SKNEADHVKYMGVVLSVLRKHELYANKKKCNFAQHKIEYLGHVISGEGVEVDPKKIKSVA
Sbjct: 507 SKNEADHVKYMGVVLSVLRKHELYANKKKCNFAQHKIEYLGHVISGEGVEVDPKKIKSVA 566

Query: 121 DWPKPTNIREVR 133
           DWPKPTNIREVR
Sbjct: 567 DWPKPTNIREVR 578

[Close]

BLAST of Cmc01g0009791 vs. ExPASy TrEMBL
Match: A0A5D3BBH4 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold174G00610 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.2e-63
Identity = 115/140 (82.14%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 1   MADEDIEKTAFRTHQGHYEFLVMPFELTNAPATFQALMNAVFKPYLRKFVLVFFDDILVY 60
           M D+DIEKTAFRTH+GHYEFLVMPF LTNAPATFQAL+N +FKP+LRKFVLVFFDDIL+Y
Sbjct: 362 MGDKDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQALVNTIFKPFLRKFVLVFFDDILIY 421

Query: 61  SKNEADHVKYMGVVLSVLRKHELYANKKKCNFAQHKIEYLGHVISGEGVEVDPKKIKSVA 120
           SKNEADHV +MG VLS+LR+HELYAN+KKCNFAQ KIEYLGHVISGEGV VDP+KIK++ 
Sbjct: 422 SKNEADHVLHMGKVLSILRQHELYANQKKCNFAQKKIEYLGHVISGEGVAVDPEKIKAIT 481

Query: 121 DWPKPTNIREVRGFLGLTGY 141
           +WP+PTNI+E+RGFLGLTGY
Sbjct: 482 NWPQPTNIKEIRGFLGLTGY 501

[Close]

BLAST of Cmc01g0009791 vs. ExPASy TrEMBL
Match: A0A5A7SX47 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G001840 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.0e-63
Identity = 117/140 (83.57%), Postives = 131/140 (93.57%), Query Frame = 0


Query: 1   MADEDIEKTAFRTHQGHYEFLVMPFELTNAPATFQALMNAVFKPYLRKFVLVFFDDILVY 60
           MADEDIEKT FRTH+GHYEFLVM F LTNAPATFQALMNA+FKP+LRK VLVFFDDILVY
Sbjct: 658 MADEDIEKTTFRTHEGHYEFLVMLFGLTNAPATFQALMNAIFKPFLRKLVLVFFDDILVY 717

Query: 61  SKNEADHVKYMGVVLSVLRKHELYANKKKCNFAQHKIEYLGHVISGEGVEVDPKKIKSVA 120
           SKNE DH+ ++G VLS+LRKH+LYAN+KKC+FAQHKIEYLGHVISGEGVEVDP+KIKS+ 
Sbjct: 718 SKNENDHLVHLGKVLSILRKHKLYANRKKCSFAQHKIEYLGHVISGEGVEVDPEKIKSIV 777

Query: 121 DWPKPTNIREVRGFLGLTGY 141
           +WP PTNI+EVRGFLGLTGY
Sbjct: 778 EWPVPTNIKEVRGFLGLTGY 797

[Close]

BLAST of Cmc01g0009791 vs. ExPASy TrEMBL
Match: A0A5A7VBR1 (Tetratricopeptide repeat protein SKI3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00180 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 7.7e-63
Identity = 114/140 (81.43%), Postives = 130/140 (92.86%), Query Frame = 0


Query: 1   MADEDIEKTAFRTHQGHYEFLVMPFELTNAPATFQALMNAVFKPYLRKFVLVFFDDILVY 60
           M ++DIEKTAFRTH+GHYEFLVMPF LTNAPATFQALMN +FKP+LRKFVLVFFDDIL+Y
Sbjct: 546 MVEKDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNTIFKPFLRKFVLVFFDDILIY 605

Query: 61  SKNEADHVKYMGVVLSVLRKHELYANKKKCNFAQHKIEYLGHVISGEGVEVDPKKIKSVA 120
           SKN  DHV++M  VLSVLR+HELYANKKKC+FAQ K+EYLGH++SGEGVEVDP+KIKS+ 
Sbjct: 606 SKNTVDHVEHMRKVLSVLREHELYANKKKCSFAQQKVEYLGHIMSGEGVEVDPEKIKSIT 665

Query: 121 DWPKPTNIREVRGFLGLTGY 141
            WPKPTNI+EVRGFLGLTGY
Sbjct: 666 KWPKPTNIKEVRGFLGLTGY 685

[Close]

BLAST of Cmc01g0009791 vs. ExPASy TrEMBL
Match: A0A5D3BZJ8 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1415G00230 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 2.9e-62
Identity = 114/140 (81.43%), Postives = 129/140 (92.14%), Query Frame = 0


Query: 1   MADEDIEKTAFRTHQGHYEFLVMPFELTNAPATFQALMNAVFKPYLRKFVLVFFDDILVY 60
           MADEDIEKTAFRTH+GHYEFLVMPF LTNAPATFQALMNA+FKP+LRKFVLVFFDDILVY
Sbjct: 709 MADEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNAIFKPFLRKFVLVFFDDILVY 768

Query: 61  SKNEADHVKYMGVVLSVLRKHELYANKKKCNFAQHKIEYLGHVISGEGVEVDPKKIKSVA 120
           S+NE +HV ++ +VL VLR+HELYANKKKC FAQ KI YLGHVISGEGV VDP+KIK++ 
Sbjct: 769 SRNEKEHVLHLEMVLKVLRQHELYANKKKCQFAQEKIGYLGHVISGEGVAVDPEKIKAIC 828

Query: 121 DWPKPTNIREVRGFLGLTGY 141
           DWP+PTN++E RGFLGLTGY
Sbjct: 829 DWPRPTNVKETRGFLGLTGY 848

[Close]

BLAST of Cmc01g0009791 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 94.7 bits (234), Expect = 6.1e-20
Identity = 40/75 (53.33%), Postives = 56/75 (74.67%), Query Frame = 0


Query: 68  VKYMGVVLSVLRKHELYANKKKCNFAQHKIEYLG--HVISGEGVEVDPKKIKSVADWPKP 127
           + ++G+VL +  +H+ YAN+KKC F Q +I YLG  H+ISGEGV  DP K++++  WP+P
Sbjct: 1   MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60

Query: 128 TNIREVRGFLGLTGY 141
            N  E+RGFLGLTGY
Sbjct: 61  KNTTELRGFLGLTGY 75

The following BLAST results are available for this feature:

BLAST of Cmc01g0009791 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059263.1	1.8e-69	100.00	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK03378.1 Tran...	[more]
KAA0067574.1	2.5e-63	82.14	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ97182.1 Ty3/gyp...	[more]
KAA0033837.1	4.2e-63	83.57	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK20583.1 Ty3/gyp...	[more]
KAA0064684.1	1.6e-62	81.43	tetratricopeptide repeat protein SKI3 [Cucumis melo var. makuwa] >TYK19906.1 tet...	[more]
KAA0063978.1	6.1e-62	81.43	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc01g0009791 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	5.2e-32	45.00	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	2.6e-31	43.57	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q8I7P9	1.4e-29	40.00	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P10401	1.1e-26	37.14	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
P0CT41	7.5e-23	38.24	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc01g0009791 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BWP0	8.5e-70	100.00	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3BBH4	1.2e-63	82.14	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7SX47	2.0e-63	83.57	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7VBR1	7.7e-63	81.43	Tetratricopeptide repeat protein SKI3 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3BZJ8	2.9e-62	81.43	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Cmc01g0009791 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	6.1e-20	53.33	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 12..103 e-value: 7.5E-19 score: 68.1
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..104 score: 13.036914
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 2..29 e-value: 2.7E-39 score: 136.6
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..139
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 2..139
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..104 e-value: 3.81489E-50 score: 156.216
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 30..104 e-value: 2.7E-39 score: 136.6
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 114..140 e-value: 2.8E-5 score: 26.0
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0009791.1	Cmc01g0009791.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098869	cellular oxidant detoxification
biological_process	GO:0015074	DNA integration
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004601	peroxidase activity