Cmc01g0009071 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0009071
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr01: 3887758 .. 3888510 (-)
RNA-Seq Expression	Cmc01g0009071
Synteny	Cmc01g0009071

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATGTACAAGGTGTCTCTTAACTAATGCTTCATTATCCTTGAAATTTTGGAGGGAAGCTGCCCAAACAATGTGTTATCTCATTAATAGGAGCCCTTCTACAGCCTTAAACTTAAAGACTCCTCAGGAGGTATGGACAGGTAAAGCTCCAAGTTTAGATCATCTCAGAGTGTTTGTATGCACATCTTATGCTCATGTTAAAGATGGAAAGCTGAACAAGAGGGCACTAAAATGCATGTTTATTGGTTATCCTCAGGGTGTCAAAGGTTATAAACTTTGGTGCTTGGAAAAGGAGATGAAAAAATGCATTATCAGTAGAGATGTAACTTTTAATGAGACAGAAATGCCTTATTGTGTCAAAAAGCAGCAGAAACAACAGACAGGTGATCGTGTTGTGAAAGAATTCAGAATTGCTTCAGAGGTACGACCATCGGTTGATTTAGATATATCTAGTGATCAGCCGCCACTAGTTTCAGAGACAGAGGATACAGAACAGTCTGAATTTAATGATATACAATCTCAACATGAGAGGATTTTGATTGATGAGGGAGCTTTTATTGAAGAAAGCTCAAGTAACAATGACCTACAGAATTATCAGCTTACCGGTGACAGAGCTCAGAGGGAAAGACATGCTCCTATAAGGTATGGTTATGCCGACTTAGTTGCTTATGCTCTTACTTGTGCAACTGACAGTATTAAAGCAGAGCCTCTTACTTTTGAAGAGGCAATTATATCTGATTTAAAGAAATAA

mRNA sequence

ATGGAATGTACAAGGTGTCTCTTAACTAATGCTTCATTATCCTTGAAATTTTGGAGGGAAGCTGCCCAAACAATGTGTTATCTCATTAATAGGAGCCCTTCTACAGCCTTAAACTTAAAGACTCCTCAGGAGGTATGGACAGGTAAAGCTCCAAGTTTAGATCATCTCAGAGTGTTTGTATGCACATCTTATGCTCATGTTAAAGATGGAAAGCTGAACAAGAGGGCACTAAAATGCATGTTTATTGGTTATCCTCAGGGTGTCAAAGGTTATAAACTTTGGTGCTTGGAAAAGGAGATGAAAAAATGCATTATCAGTAGAGATGTAACTTTTAATGAGACAGAAATGCCTTATTGTGTCAAAAAGCAGCAGAAACAACAGACAGGTGATCGTGTTGTGAAAGAATTCAGAATTGCTTCAGAGGTACGACCATCGGTTGATTTAGATATATCTAGTGATCAGCCGCCACTAGTTTCAGAGACAGAGGATACAGAACAGTCTGAATTTAATGATATACAATCTCAACATGAGAGGATTTTGATTGATGAGGGAGCTTTTATTGAAGAAAGCTCAAGTAACAATGACCTACAGAATTATCAGCTTACCGGTGACAGAGCTCAGAGGGAAAGACATGCTCCTATAAGGTATGGTTATGCCGACTTAGTTGCTTATGCTCTTACTTGTGCAACTGACAGTATTAAAGCAGAGCCTCTTACTTTTGAAGAGGCAATTATATCTGATTTAAAGAAATAA

Coding sequence (CDS)

ATGGAATGTACAAGGTGTCTCTTAACTAATGCTTCATTATCCTTGAAATTTTGGAGGGAAGCTGCCCAAACAATGTGTTATCTCATTAATAGGAGCCCTTCTACAGCCTTAAACTTAAAGACTCCTCAGGAGGTATGGACAGGTAAAGCTCCAAGTTTAGATCATCTCAGAGTGTTTGTATGCACATCTTATGCTCATGTTAAAGATGGAAAGCTGAACAAGAGGGCACTAAAATGCATGTTTATTGGTTATCCTCAGGGTGTCAAAGGTTATAAACTTTGGTGCTTGGAAAAGGAGATGAAAAAATGCATTATCAGTAGAGATGTAACTTTTAATGAGACAGAAATGCCTTATTGTGTCAAAAAGCAGCAGAAACAACAGACAGGTGATCGTGTTGTGAAAGAATTCAGAATTGCTTCAGAGGTACGACCATCGGTTGATTTAGATATATCTAGTGATCAGCCGCCACTAGTTTCAGAGACAGAGGATACAGAACAGTCTGAATTTAATGATATACAATCTCAACATGAGAGGATTTTGATTGATGAGGGAGCTTTTATTGAAGAAAGCTCAAGTAACAATGACCTACAGAATTATCAGCTTACCGGTGACAGAGCTCAGAGGGAAAGACATGCTCCTATAAGGTATGGTTATGCCGACTTAGTTGCTTATGCTCTTACTTGTGCAACTGACAGTATTAAAGCAGAGCCTCTTACTTTTGAAGAGGCAATTATATCTGATTTAAAGAAATAA

Protein sequence

MECTRCLLTNASLSLKFWREAAQTMCYLINRSPSTALNLKTPQEVWTGKAPSLDHLRVFVCTSYAHVKDGKLNKRALKCMFIGYPQGVKGYKLWCLEKEMKKCIISRDVTFNETEMPYCVKKQQKQQTGDRVVKEFRIASEVRPSVDLDISSDQPPLVSETEDTEQSEFNDIQSQHERILIDEGAFIEESSSNNDLQNYQLTGDRAQRERHAPIRYGYADLVAYALTCATDSIKAEPLTFEEAIISDLKK

Homology

[Close]

BLAST of Cmc01g0009071 vs. NCBI nr
Match: TYK13826.1 (putative polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 439.9 bits (1130), Expect = 1.5e-119
Identity = 220/250 (88.00%), Postives = 230/250 (92.00%), Query Frame = 0


Query: 1   MECTRCLLTNASLSLKFWREAAQTMCYLINRSPSTALNLKTPQEVWTGKAPSLDHLRVFV 60
           ME TRCLLTNASL LKFW EAAQT CYLINRSPSTALNLKTPQEVWTGKAPSL+HLRVF 
Sbjct: 420 MERTRCLLTNASLPLKFWGEAAQTACYLINRSPSTALNLKTPQEVWTGKAPSLEHLRVFG 479

Query: 61  CTSYAHVKDGKLNKRALKCMFIGYPQGVKGYKLWCLEKEMKKCIISRDVTFNETEMPYCV 120
           CT+YAHVKDGKLNKRALKCMFIGYPQGVKGYKLWC+EK M KCIISRDVTFNETEMPYCV
Sbjct: 480 CTAYAHVKDGKLNKRALKCMFIGYPQGVKGYKLWCIEKGMNKCIISRDVTFNETEMPYCV 539

Query: 121 KKQQKQQTGDRVVKEFRIASEVRPSVDLDISSDQPPLVSETEDTEQSEFNDIQSQHERIL 180
           K+QQKQQTGD VV E RIASEVRPS+DLD   +QPPLVSE EDT+QSEF+ IQSQ ERIL
Sbjct: 540 KEQQKQQTGDHVVTEVRIASEVRPSIDLD---NQPPLVSEIEDTQQSEFDGIQSQQERIL 599

Query: 181 IDEGAFIEESSSNNDLQNYQLTGDRAQRERHAPIRYGYADLVAYALTCATDSIKAEPLTF 240
           IDEGAFIEESSSNNDLQNYQLT DR QRERHAPIRYGYADLVAYALTCA DSI+AEPLTF
Sbjct: 600 IDEGAFIEESSSNNDLQNYQLTRDRVQRERHAPIRYGYADLVAYALTCAADSIEAEPLTF 659

Query: 241 EEAIISDLKK 251
           EEAI+SD KK
Sbjct: 660 EEAIVSDSKK 666

[Close]

BLAST of Cmc01g0009071 vs. NCBI nr
Match: TYK25306.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 439.9 bits (1130), Expect = 1.5e-119
Identity = 220/250 (88.00%), Postives = 230/250 (92.00%), Query Frame = 0


Query: 1   MECTRCLLTNASLSLKFWREAAQTMCYLINRSPSTALNLKTPQEVWTGKAPSLDHLRVFV 60
           ME TRCLLTNASL LKFW EAAQT CYLINRSPSTALNLKTPQEVWTGKAPSL+HLRVF 
Sbjct: 590 MERTRCLLTNASLPLKFWGEAAQTACYLINRSPSTALNLKTPQEVWTGKAPSLEHLRVFG 649

Query: 61  CTSYAHVKDGKLNKRALKCMFIGYPQGVKGYKLWCLEKEMKKCIISRDVTFNETEMPYCV 120
           CT+YAHVKDGKLNKRALKCMFIGYPQGVKGYKLWC+EK M KCIISRDVTFNETEMPYCV
Sbjct: 650 CTAYAHVKDGKLNKRALKCMFIGYPQGVKGYKLWCIEKGMNKCIISRDVTFNETEMPYCV 709

Query: 121 KKQQKQQTGDRVVKEFRIASEVRPSVDLDISSDQPPLVSETEDTEQSEFNDIQSQHERIL 180
           K+QQKQQTGD VV E RIASEVRPS+DLD   +QPPLVSE EDT+QSEF+ IQSQ ERIL
Sbjct: 710 KEQQKQQTGDHVVTEVRIASEVRPSIDLD---NQPPLVSEIEDTQQSEFDGIQSQQERIL 769

Query: 181 IDEGAFIEESSSNNDLQNYQLTGDRAQRERHAPIRYGYADLVAYALTCATDSIKAEPLTF 240
           IDEGAFIEESSSNNDLQNYQLT DR QRERHAPIRYGYADLVAYALTCA DSI+AEPLTF
Sbjct: 770 IDEGAFIEESSSNNDLQNYQLTRDRVQRERHAPIRYGYADLVAYALTCAADSIEAEPLTF 829

Query: 241 EEAIISDLKK 251
           EEAI+SD KK
Sbjct: 830 EEAIVSDSKK 836

[Close]

BLAST of Cmc01g0009071 vs. NCBI nr
Match: KAA0050719.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 439.9 bits (1130), Expect = 1.5e-119
Identity = 220/250 (88.00%), Postives = 230/250 (92.00%), Query Frame = 0


Query: 1   MECTRCLLTNASLSLKFWREAAQTMCYLINRSPSTALNLKTPQEVWTGKAPSLDHLRVFV 60
           ME TRCLLTNASL LKFW EAAQT CYLINRSPSTALNLKTPQEVWTGKAPSL+HLRVF 
Sbjct: 590 MERTRCLLTNASLPLKFWGEAAQTACYLINRSPSTALNLKTPQEVWTGKAPSLEHLRVFG 649

Query: 61  CTSYAHVKDGKLNKRALKCMFIGYPQGVKGYKLWCLEKEMKKCIISRDVTFNETEMPYCV 120
           CT+YAHVKDGKLNKRALKCMFIGYPQGVKGYKLWC+EK M KCIISRDVTFNETEMPYCV
Sbjct: 650 CTAYAHVKDGKLNKRALKCMFIGYPQGVKGYKLWCIEKGMNKCIISRDVTFNETEMPYCV 709

Query: 121 KKQQKQQTGDRVVKEFRIASEVRPSVDLDISSDQPPLVSETEDTEQSEFNDIQSQHERIL 180
           K+QQKQQTGD VV E RIASEVRPS+DLD   +QPPLVSE EDT+QSEF+ IQSQ ERIL
Sbjct: 710 KEQQKQQTGDHVVTEVRIASEVRPSIDLD---NQPPLVSEIEDTQQSEFDGIQSQQERIL 769

Query: 181 IDEGAFIEESSSNNDLQNYQLTGDRAQRERHAPIRYGYADLVAYALTCATDSIKAEPLTF 240
           IDEGAFIEESSSNNDLQNYQLT DR QRERHAPIRYGYADLVAYALTCA DSI+AEPLTF
Sbjct: 770 IDEGAFIEESSSNNDLQNYQLTRDRVQRERHAPIRYGYADLVAYALTCAADSIEAEPLTF 829

Query: 241 EEAIISDLKK 251
           EEAI+SD KK
Sbjct: 830 EEAIVSDSKK 836

[Close]

BLAST of Cmc01g0009071 vs. NCBI nr
Match: KAA0043826.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 438.3 bits (1126), Expect = 4.3e-119
Identity = 219/250 (87.60%), Postives = 230/250 (92.00%), Query Frame = 0


Query: 1   MECTRCLLTNASLSLKFWREAAQTMCYLINRSPSTALNLKTPQEVWTGKAPSLDHLRVFV 60
           ME TRCLLTNASL LKFW EAAQT CYLINRSPSTALNLKTPQEVWTGKAPSL+HLRVF 
Sbjct: 480 MERTRCLLTNASLPLKFWGEAAQTACYLINRSPSTALNLKTPQEVWTGKAPSLEHLRVFG 539

Query: 61  CTSYAHVKDGKLNKRALKCMFIGYPQGVKGYKLWCLEKEMKKCIISRDVTFNETEMPYCV 120
           CT+YAHVKDGKLNKRALKC+FIGYPQGVKGYKLWC+EK M KCIISRDVTFNETEMPYCV
Sbjct: 540 CTAYAHVKDGKLNKRALKCIFIGYPQGVKGYKLWCIEKGMNKCIISRDVTFNETEMPYCV 599

Query: 121 KKQQKQQTGDRVVKEFRIASEVRPSVDLDISSDQPPLVSETEDTEQSEFNDIQSQHERIL 180
           K+QQKQQTGD VV E RIASEVRPS+DLD   +QPPLVSE EDT+QSEF+ IQSQ ERIL
Sbjct: 600 KEQQKQQTGDHVVTEVRIASEVRPSIDLD---NQPPLVSEIEDTQQSEFDGIQSQQERIL 659

Query: 181 IDEGAFIEESSSNNDLQNYQLTGDRAQRERHAPIRYGYADLVAYALTCATDSIKAEPLTF 240
           IDEGAFIEESSSNNDLQNYQLT DR QRERHAPIRYGYADLVAYALTCA DSI+AEPLTF
Sbjct: 660 IDEGAFIEESSSNNDLQNYQLTRDRVQRERHAPIRYGYADLVAYALTCAADSIEAEPLTF 719

Query: 241 EEAIISDLKK 251
           EEAI+SD KK
Sbjct: 720 EEAIVSDSKK 726

[Close]

BLAST of Cmc01g0009071 vs. NCBI nr
Match: KAA0047995.1 (retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 436.8 bits (1122), Expect = 1.3e-118
Identity = 219/250 (87.60%), Postives = 229/250 (91.60%), Query Frame = 0


Query: 1   MECTRCLLTNASLSLKFWREAAQTMCYLINRSPSTALNLKTPQEVWTGKAPSLDHLRVFV 60
           ME TRCLLTNASL LKFW EAAQT CYLINRSPSTALNLKTPQEVWTGKAPSL+HLRVF 
Sbjct: 590 MERTRCLLTNASLPLKFWGEAAQTACYLINRSPSTALNLKTPQEVWTGKAPSLEHLRVFG 649

Query: 61  CTSYAHVKDGKLNKRALKCMFIGYPQGVKGYKLWCLEKEMKKCIISRDVTFNETEMPYCV 120
           CT+YAHVKDGKLNKRALKCMFIGYPQGVKGYKLWC+EK M KCIISRDVTFNETEMPYCV
Sbjct: 650 CTAYAHVKDGKLNKRALKCMFIGYPQGVKGYKLWCIEKGMNKCIISRDVTFNETEMPYCV 709

Query: 121 KKQQKQQTGDRVVKEFRIASEVRPSVDLDISSDQPPLVSETEDTEQSEFNDIQSQHERIL 180
           K+QQKQQTGD VV E RIASEVRPS+DLD   +QPPLVSE EDT+QSEF+ IQSQ ERIL
Sbjct: 710 KEQQKQQTGDHVVTEVRIASEVRPSIDLD---NQPPLVSEIEDTQQSEFDGIQSQQERIL 769

Query: 181 IDEGAFIEESSSNNDLQNYQLTGDRAQRERHAPIRYGYADLVAYALTCATDSIKAEPLTF 240
           IDE AFIEESSSNNDLQNYQLT DR QRERHAPIRYGYADLVAYALTCA DSI+AEPLTF
Sbjct: 770 IDERAFIEESSSNNDLQNYQLTRDRVQRERHAPIRYGYADLVAYALTCAADSIEAEPLTF 829

Query: 241 EEAIISDLKK 251
           EEAI+SD KK
Sbjct: 830 EEAIVSDSKK 836

[Close]

BLAST of Cmc01g0009071 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.2e-23
Identity = 83/240 (34.58%), Postives = 121/240 (50.42%), Query Frame = 0


Query: 1   MECTRCLLTNASLSLKFWREAAQTMCYLINRSPSTALNLKTPQEVWTGKAPSLDHLRVFV 60
           +E  R +L  A L   FW EA QT CYLINRSPS  L  + P+ VWT K  S  HL+VF 
Sbjct: 593 VEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFG 652

Query: 61  CTSYAHV---KDGKLNKRALKCMFIGYPQGVKGYKLWCLEKEMKKCIISRDVTFNETEMP 120
           C ++AHV   +  KL+ +++ C+FIGY     GY+LW  +   KK I SRDV F E+E+ 
Sbjct: 653 CRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLW--DPVKKKVIRSRDVVFRESEVR 712

Query: 121 YCVKKQQKQQTGDRVVKEFRIASEVRPSVDLDISSDQPPLVSETED--TEQSEF-NDIQS 180
                 +K + G  ++  F         V +  +S+ P     T D  +EQ E   ++  
Sbjct: 713 TAADMSEKVKNG--IIPNF---------VTIPSTSNNPTSAESTTDEVSEQGEQPGEVIE 772

Query: 181 QHERILIDEGAFIEESSSNNDLQNYQLTGDRAQRERHAPIRYGYADLVAYALTCATDSIK 235
           Q E+  +DEG    E  +  + Q+  L   R++R R    RY   + V  +     +S+K
Sbjct: 773 QGEQ--LDEGVEEVEHPTQGEEQHQPLR--RSERPRVESRRYPSTEYVLISDDREPESLK 815

[Close]

BLAST of Cmc01g0009071 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.2e-12
Identity = 40/115 (34.78%), Postives = 62/115 (53.91%), Query Frame = 0


Query: 7   LLTNASLSLKFWREAAQTMCYLINRSPSTALNLKTPQEVWTGKAPSLDHLRVFVCTSYAH 66
           LL++AS+   +W  A     YLINR P+  L L++P +   G +P+ D LRVF C  Y  
Sbjct: 639 LLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKLRVFGCACYPW 698

Query: 67  VK---DGKLNKRALKCMFIGYPQGVKGYKLWCLEKEMKKCIISRDVTFNETEMPY 119
           ++     KL+ ++ +C+F+GY      Y   CL  +  +  ISR V F+E   P+
Sbjct: 699 LRPYNQHKLDDKSRQCVFLGYSLTQSAY--LCLHLQTSRLYISRHVRFDENCFPF 751

[Close]

BLAST of Cmc01g0009071 vs. ExPASy Swiss-Prot
Match: P92512 (Uncharacterized mitochondrial protein AtMg00710 OS=Arabidopsis thaliana OX=3702 GN=AtMg00710 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.5e-10
Identity = 32/78 (41.03%), Postives = 43/78 (55.13%), Query Frame = 0


Query: 1  MECTRCLLTNASLSLKFWREAAQTMCYLINRSPSTALNLKTPQEVWTGKAPSLDHLRVFV 60
          +E  R +L    L   F  +AA T  ++IN+ PSTA+N   P EVW    P+  +LR F 
Sbjct: 6  IEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYLRRFG 65

Query: 61 CTSYAHVKDGKLNKRALK 79
          C +Y H  +GKL  RA K
Sbjct: 66 CVAYIHCDEGKLKPRAKK 83

[Close]

BLAST of Cmc01g0009071 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.8e-09
Identity = 37/115 (32.17%), Postives = 58/115 (50.43%), Query Frame = 0


Query: 7   LLTNASLSLKFWREAAQTMCYLINRSPSTALNLKTPQEVWTGKAPSLDHLRVFVCTSYAH 66
           LL++AS+   +W  A     YLINR P+  L L++P +   G+ P+ + L+VF C  Y  
Sbjct: 618 LLSHASVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCACYPW 677

Query: 67  VKD---GKLNKRALKCMFIGYPQGVKGYKLWCLEKEMKKCIISRDVTFNETEMPY 119
           ++     KL  ++ +C F+GY      Y   CL     +   SR V F+E   P+
Sbjct: 678 LRPYNRHKLEDKSKQCAFMGYSLTQSAY--LCLHIPTGRLYTSRHVQFDERCFPF 730

[Close]

BLAST of Cmc01g0009071 vs. ExPASy TrEMBL
Match: A0A5D3DNU1 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004440 PE=4 SV=1)

HSP 1 Score: 439.9 bits (1130), Expect = 7.2e-120
Identity = 220/250 (88.00%), Postives = 230/250 (92.00%), Query Frame = 0


Query: 1   MECTRCLLTNASLSLKFWREAAQTMCYLINRSPSTALNLKTPQEVWTGKAPSLDHLRVFV 60
           ME TRCLLTNASL LKFW EAAQT CYLINRSPSTALNLKTPQEVWTGKAPSL+HLRVF 
Sbjct: 590 MERTRCLLTNASLPLKFWGEAAQTACYLINRSPSTALNLKTPQEVWTGKAPSLEHLRVFG 649

Query: 61  CTSYAHVKDGKLNKRALKCMFIGYPQGVKGYKLWCLEKEMKKCIISRDVTFNETEMPYCV 120
           CT+YAHVKDGKLNKRALKCMFIGYPQGVKGYKLWC+EK M KCIISRDVTFNETEMPYCV
Sbjct: 650 CTAYAHVKDGKLNKRALKCMFIGYPQGVKGYKLWCIEKGMNKCIISRDVTFNETEMPYCV 709

Query: 121 KKQQKQQTGDRVVKEFRIASEVRPSVDLDISSDQPPLVSETEDTEQSEFNDIQSQHERIL 180
           K+QQKQQTGD VV E RIASEVRPS+DLD   +QPPLVSE EDT+QSEF+ IQSQ ERIL
Sbjct: 710 KEQQKQQTGDHVVTEVRIASEVRPSIDLD---NQPPLVSEIEDTQQSEFDGIQSQQERIL 769

Query: 181 IDEGAFIEESSSNNDLQNYQLTGDRAQRERHAPIRYGYADLVAYALTCATDSIKAEPLTF 240
           IDEGAFIEESSSNNDLQNYQLT DR QRERHAPIRYGYADLVAYALTCA DSI+AEPLTF
Sbjct: 770 IDEGAFIEESSSNNDLQNYQLTRDRVQRERHAPIRYGYADLVAYALTCAADSIEAEPLTF 829

Query: 241 EEAIISDLKK 251
           EEAI+SD KK
Sbjct: 830 EEAIVSDSKK 836

[Close]

BLAST of Cmc01g0009071 vs. ExPASy TrEMBL
Match: A0A5D3CTV2 (Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00910 PE=4 SV=1)

HSP 1 Score: 439.9 bits (1130), Expect = 7.2e-120
Identity = 220/250 (88.00%), Postives = 230/250 (92.00%), Query Frame = 0


Query: 1   MECTRCLLTNASLSLKFWREAAQTMCYLINRSPSTALNLKTPQEVWTGKAPSLDHLRVFV 60
           ME TRCLLTNASL LKFW EAAQT CYLINRSPSTALNLKTPQEVWTGKAPSL+HLRVF 
Sbjct: 420 MERTRCLLTNASLPLKFWGEAAQTACYLINRSPSTALNLKTPQEVWTGKAPSLEHLRVFG 479

Query: 61  CTSYAHVKDGKLNKRALKCMFIGYPQGVKGYKLWCLEKEMKKCIISRDVTFNETEMPYCV 120
           CT+YAHVKDGKLNKRALKCMFIGYPQGVKGYKLWC+EK M KCIISRDVTFNETEMPYCV
Sbjct: 480 CTAYAHVKDGKLNKRALKCMFIGYPQGVKGYKLWCIEKGMNKCIISRDVTFNETEMPYCV 539

Query: 121 KKQQKQQTGDRVVKEFRIASEVRPSVDLDISSDQPPLVSETEDTEQSEFNDIQSQHERIL 180
           K+QQKQQTGD VV E RIASEVRPS+DLD   +QPPLVSE EDT+QSEF+ IQSQ ERIL
Sbjct: 540 KEQQKQQTGDHVVTEVRIASEVRPSIDLD---NQPPLVSEIEDTQQSEFDGIQSQQERIL 599

Query: 181 IDEGAFIEESSSNNDLQNYQLTGDRAQRERHAPIRYGYADLVAYALTCATDSIKAEPLTF 240
           IDEGAFIEESSSNNDLQNYQLT DR QRERHAPIRYGYADLVAYALTCA DSI+AEPLTF
Sbjct: 600 IDEGAFIEESSSNNDLQNYQLTRDRVQRERHAPIRYGYADLVAYALTCAADSIEAEPLTF 659

Query: 241 EEAIISDLKK 251
           EEAI+SD KK
Sbjct: 660 EEAIVSDSKK 666

[Close]

BLAST of Cmc01g0009071 vs. ExPASy TrEMBL
Match: A0A5A7UB25 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold560G00190 PE=4 SV=1)

HSP 1 Score: 439.9 bits (1130), Expect = 7.2e-120
Identity = 220/250 (88.00%), Postives = 230/250 (92.00%), Query Frame = 0


Query: 1   MECTRCLLTNASLSLKFWREAAQTMCYLINRSPSTALNLKTPQEVWTGKAPSLDHLRVFV 60
           ME TRCLLTNASL LKFW EAAQT CYLINRSPSTALNLKTPQEVWTGKAPSL+HLRVF 
Sbjct: 590 MERTRCLLTNASLPLKFWGEAAQTACYLINRSPSTALNLKTPQEVWTGKAPSLEHLRVFG 649

Query: 61  CTSYAHVKDGKLNKRALKCMFIGYPQGVKGYKLWCLEKEMKKCIISRDVTFNETEMPYCV 120
           CT+YAHVKDGKLNKRALKCMFIGYPQGVKGYKLWC+EK M KCIISRDVTFNETEMPYCV
Sbjct: 650 CTAYAHVKDGKLNKRALKCMFIGYPQGVKGYKLWCIEKGMNKCIISRDVTFNETEMPYCV 709

Query: 121 KKQQKQQTGDRVVKEFRIASEVRPSVDLDISSDQPPLVSETEDTEQSEFNDIQSQHERIL 180
           K+QQKQQTGD VV E RIASEVRPS+DLD   +QPPLVSE EDT+QSEF+ IQSQ ERIL
Sbjct: 710 KEQQKQQTGDHVVTEVRIASEVRPSIDLD---NQPPLVSEIEDTQQSEFDGIQSQQERIL 769

Query: 181 IDEGAFIEESSSNNDLQNYQLTGDRAQRERHAPIRYGYADLVAYALTCATDSIKAEPLTF 240
           IDEGAFIEESSSNNDLQNYQLT DR QRERHAPIRYGYADLVAYALTCA DSI+AEPLTF
Sbjct: 770 IDEGAFIEESSSNNDLQNYQLTRDRVQRERHAPIRYGYADLVAYALTCAADSIEAEPLTF 829

Query: 241 EEAIISDLKK 251
           EEAI+SD KK
Sbjct: 830 EEAIVSDSKK 836

[Close]

BLAST of Cmc01g0009071 vs. ExPASy TrEMBL
Match: A0A5A7TP18 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G001600 PE=4 SV=1)

HSP 1 Score: 438.3 bits (1126), Expect = 2.1e-119
Identity = 219/250 (87.60%), Postives = 230/250 (92.00%), Query Frame = 0


Query: 1   MECTRCLLTNASLSLKFWREAAQTMCYLINRSPSTALNLKTPQEVWTGKAPSLDHLRVFV 60
           ME TRCLLTNASL LKFW EAAQT CYLINRSPSTALNLKTPQEVWTGKAPSL+HLRVF 
Sbjct: 480 MERTRCLLTNASLPLKFWGEAAQTACYLINRSPSTALNLKTPQEVWTGKAPSLEHLRVFG 539

Query: 61  CTSYAHVKDGKLNKRALKCMFIGYPQGVKGYKLWCLEKEMKKCIISRDVTFNETEMPYCV 120
           CT+YAHVKDGKLNKRALKC+FIGYPQGVKGYKLWC+EK M KCIISRDVTFNETEMPYCV
Sbjct: 540 CTAYAHVKDGKLNKRALKCIFIGYPQGVKGYKLWCIEKGMNKCIISRDVTFNETEMPYCV 599

Query: 121 KKQQKQQTGDRVVKEFRIASEVRPSVDLDISSDQPPLVSETEDTEQSEFNDIQSQHERIL 180
           K+QQKQQTGD VV E RIASEVRPS+DLD   +QPPLVSE EDT+QSEF+ IQSQ ERIL
Sbjct: 600 KEQQKQQTGDHVVTEVRIASEVRPSIDLD---NQPPLVSEIEDTQQSEFDGIQSQQERIL 659

Query: 181 IDEGAFIEESSSNNDLQNYQLTGDRAQRERHAPIRYGYADLVAYALTCATDSIKAEPLTF 240
           IDEGAFIEESSSNNDLQNYQLT DR QRERHAPIRYGYADLVAYALTCA DSI+AEPLTF
Sbjct: 660 IDEGAFIEESSSNNDLQNYQLTRDRVQRERHAPIRYGYADLVAYALTCAADSIEAEPLTF 719

Query: 241 EEAIISDLKK 251
           EEAI+SD KK
Sbjct: 720 EEAIVSDSKK 726

[Close]

BLAST of Cmc01g0009071 vs. ExPASy TrEMBL
Match: A0A5A7U2U7 (Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00590 PE=4 SV=1)

HSP 1 Score: 436.8 bits (1122), Expect = 6.1e-119
Identity = 219/250 (87.60%), Postives = 229/250 (91.60%), Query Frame = 0


Query: 1   MECTRCLLTNASLSLKFWREAAQTMCYLINRSPSTALNLKTPQEVWTGKAPSLDHLRVFV 60
           ME TRCLLTNASL LKFW EAAQT CYLINRSPSTALNLKTPQEVWTGKAPSL+HLRVF 
Sbjct: 590 MERTRCLLTNASLPLKFWGEAAQTACYLINRSPSTALNLKTPQEVWTGKAPSLEHLRVFG 649

Query: 61  CTSYAHVKDGKLNKRALKCMFIGYPQGVKGYKLWCLEKEMKKCIISRDVTFNETEMPYCV 120
           CT+YAHVKDGKLNKRALKCMFIGYPQGVKGYKLWC+EK M KCIISRDVTFNETEMPYCV
Sbjct: 650 CTAYAHVKDGKLNKRALKCMFIGYPQGVKGYKLWCIEKGMNKCIISRDVTFNETEMPYCV 709

Query: 121 KKQQKQQTGDRVVKEFRIASEVRPSVDLDISSDQPPLVSETEDTEQSEFNDIQSQHERIL 180
           K+QQKQQTGD VV E RIASEVRPS+DLD   +QPPLVSE EDT+QSEF+ IQSQ ERIL
Sbjct: 710 KEQQKQQTGDHVVTEVRIASEVRPSIDLD---NQPPLVSEIEDTQQSEFDGIQSQQERIL 769

Query: 181 IDEGAFIEESSSNNDLQNYQLTGDRAQRERHAPIRYGYADLVAYALTCATDSIKAEPLTF 240
           IDE AFIEESSSNNDLQNYQLT DR QRERHAPIRYGYADLVAYALTCA DSI+AEPLTF
Sbjct: 770 IDERAFIEESSSNNDLQNYQLTRDRVQRERHAPIRYGYADLVAYALTCAADSIEAEPLTF 829

Query: 241 EEAIISDLKK 251
           EEAI+SD KK
Sbjct: 830 EEAIVSDSKK 836

[Close]

BLAST of Cmc01g0009071 vs. TAIR 10
Match: ATMG00710.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 66.6 bits (161), Expect = 3.2e-11
Identity = 32/78 (41.03%), Postives = 43/78 (55.13%), Query Frame = 0


Query: 1  MECTRCLLTNASLSLKFWREAAQTMCYLINRSPSTALNLKTPQEVWTGKAPSLDHLRVFV 60
          +E  R +L    L   F  +AA T  ++IN+ PSTA+N   P EVW    P+  +LR F 
Sbjct: 6  IEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYLRRFG 65

Query: 61 CTSYAHVKDGKLNKRALK 79
          C +Y H  +GKL  RA K
Sbjct: 66 CVAYIHCDEGKLKPRAKK 83

The following BLAST results are available for this feature:

BLAST of Cmc01g0009071 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK13826.1	1.5e-119	88.00	putative polyprotein [Cucumis melo var. makuwa]	[more]
TYK25306.1	1.5e-119	88.00	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0050719.1	1.5e-119	88.00	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0043826.1	4.3e-119	87.60	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0047995.1	1.3e-118	87.60	retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa...	[more]

BLAST of Cmc01g0009071 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.2e-23	34.58	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q94HW2	6.2e-12	34.78	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P92512	4.5e-10	41.03	Uncharacterized mitochondrial protein AtMg00710 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9ZT94	3.8e-09	32.17	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc01g0009071 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DNU1	7.2e-120	88.00	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5D3CTV2	7.2e-120	88.00	Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488...	[more]
A0A5A7UB25	7.2e-120	88.00	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5A7TP18	2.1e-119	87.60	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5A7U2U7	6.1e-119	87.60	Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. maku...	[more]

BLAST of Cmc01g0009071 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00710.1	3.2e-11	41.03	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..66 e-value: 9.2E-6 score: 27.0
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 4..192
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 6..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0009071.1	Cmc01g0009071.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding