Cmc01g0008811 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0008811
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr01: 3605948 .. 3606385 (-)
RNA-Seq Expression	Cmc01g0008811
Synteny	Cmc01g0008811

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTTTCAAAAATTCAAAACTCTCACAGAAAAACAACTTGGTAGATCTATCATGAGTATTCAAACTGATGGGGGTAGTGAATTCAAAACTTTTATATCTTATCTAAACAACCATGGGATTGAACATCGACTCACATGCCTTCACACTTTACAACAAAATGGAATTGTTGAGAGAAAACACAGACATATTATGGACATGGGTATCACTCTTCTTTCTCAAGTCACCTTACCATTATCCATTTGGGATGAAGCTTTCTCTACTAGTGCGTATCTTGTTAATCGTCTGCCCACACATGTACTCAACCAACTTAGTCCATTGGAGAAGTTATTTGGTCGGAAACCTAATTATCCTTCCCTAAAAGTATTTGGTTGCCAATGTTATCCCCTTATCAGACCATATCAATCTCACAAACTGTCTTACAGGTCTAAACCTTAG

mRNA sequence

ATGGCCTTTCAAAAATTCAAAACTCTCACAGAAAAACAACTTGGTAGATCTATCATGAGTATTCAAACTGATGGGGGTAGTGAATTCAAAACTTTTATATCTTATCTAAACAACCATGGGATTGAACATCGACTCACATGCCTTCACACTTTACAACAAAATGGAATTGTTGAGAGAAAACACAGACATATTATGGACATGGGTATCACTCTTCTTTCTCAAGTCACCTTACCATTATCCATTTGGGATGAAGCTTTCTCTACTAGTGCGTATCTTGTTAATCGTCTGCCCACACATGTACTCAACCAACTTAGTCCATTGGAGAAGTTATTTGGTCGGAAACCTAATTATCCTTCCCTAAAAGTATTTGGTTGCCAATGTTATCCCCTTATCAGACCATATCAATCTCACAAACTGTCTTACAGGTCTAAACCTTAG

Coding sequence (CDS)

ATGGCCTTTCAAAAATTCAAAACTCTCACAGAAAAACAACTTGGTAGATCTATCATGAGTATTCAAACTGATGGGGGTAGTGAATTCAAAACTTTTATATCTTATCTAAACAACCATGGGATTGAACATCGACTCACATGCCTTCACACTTTACAACAAAATGGAATTGTTGAGAGAAAACACAGACATATTATGGACATGGGTATCACTCTTCTTTCTCAAGTCACCTTACCATTATCCATTTGGGATGAAGCTTTCTCTACTAGTGCGTATCTTGTTAATCGTCTGCCCACACATGTACTCAACCAACTTAGTCCATTGGAGAAGTTATTTGGTCGGAAACCTAATTATCCTTCCCTAAAAGTATTTGGTTGCCAATGTTATCCCCTTATCAGACCATATCAATCTCACAAACTGTCTTACAGGTCTAAACCTTAG

Protein sequence

MAFQKFKTLTEKQLGRSIMSIQTDGGSEFKTFISYLNNHGIEHRLTCLHTLQQNGIVERKHRHIMDMGITLLSQVTLPLSIWDEAFSTSAYLVNRLPTHVLNQLSPLEKLFGRKPNYPSLKVFGCQCYPLIRPYQSHKLSYRSKP

Homology

[Close]

BLAST of Cmc01g0008811 vs. NCBI nr
Match: KAA0048297.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 229.2 bits (583), Expect = 2.3e-56
Identity = 106/145 (73.10%), Postives = 125/145 (86.21%), Query Frame = 0


Query: 1   MAFQKFKTLTEKQLGRSIMSIQTDGGSEFKTFISYLNNHGIEHRLTCLHTLQQNGIVERK 60
           +AFQKFKT  EK LG+SI S+QTDGG+EFK F  +L+ HGIEHR+TC +T +QN IVERK
Sbjct: 601 LAFQKFKTCVEKSLGQSIKSLQTDGGTEFKPFKPFLDQHGIEHRITCPYTSKQNDIVERK 660

Query: 61  HRHIMDMGITLLSQVTLPLSIWDEAFSTSAYLVNRLPTHVLNQLSPLEKLFGRKPNYPSL 120
           HR+IM+MG+TLLSQ TLPLS WDEAFSTS YL+NRLPT VL+ +SPLEKLF RKPN+PSL
Sbjct: 661 HRYIMEMGLTLLSQATLPLSFWDEAFSTSVYLINRLPTPVLDNISPLEKLFCRKPNFPSL 720

Query: 121 KVFGCQCYPLIRPYQSHKLSYRSKP 146
           +VFGC+CYP +RPYQSHKLS RS P
Sbjct: 721 RVFGCKCYPYLRPYQSHKLSLRSTP 745

[Close]

BLAST of Cmc01g0008811 vs. NCBI nr
Match: TYK10642.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 229.2 bits (583), Expect = 2.3e-56
Identity = 106/145 (73.10%), Postives = 125/145 (86.21%), Query Frame = 0


Query: 1   MAFQKFKTLTEKQLGRSIMSIQTDGGSEFKTFISYLNNHGIEHRLTCLHTLQQNGIVERK 60
           +AFQKFKT  EK LG+SI S+QTDGG+EFK F  +L+ HGIEHR+TC +T +QN IVERK
Sbjct: 601 LAFQKFKTCVEKSLGQSIKSLQTDGGTEFKPFKPFLDQHGIEHRITCPYTSKQNDIVERK 660

Query: 61  HRHIMDMGITLLSQVTLPLSIWDEAFSTSAYLVNRLPTHVLNQLSPLEKLFGRKPNYPSL 120
           HR+IM+MG+TLLSQ TLPLS WDEAFSTS YL+NRLPT VL+ +SPLEKLF RKPN+PSL
Sbjct: 661 HRYIMEMGLTLLSQATLPLSFWDEAFSTSVYLINRLPTPVLDNISPLEKLFCRKPNFPSL 720

Query: 121 KVFGCQCYPLIRPYQSHKLSYRSKP 146
           +VFGC+CYP +RPYQSHKLS RS P
Sbjct: 721 RVFGCKCYPYLRPYQSHKLSLRSTP 745

[Close]

BLAST of Cmc01g0008811 vs. NCBI nr
Match: KAA0067212.1 (retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa])

HSP 1 Score: 223.0 bits (567), Expect = 1.7e-54
Identity = 104/144 (72.22%), Postives = 120/144 (83.33%), Query Frame = 0


Query: 2   AFQKFKTLTEKQLGRSIMSIQTDGGSEFKTFISYLNNHGIEHRLTCLHTLQQNGIVERKH 61
           AFQKFKT  EK LG+SI S+QTDGG+EFK F  +L+ HGIEHR+TC +T +QN IVERKH
Sbjct: 200 AFQKFKTCVEKSLGQSIKSLQTDGGTEFKPFKPFLDQHGIEHRITCPYTSKQNDIVERKH 259

Query: 62  RHIMDMGITLLSQVTLPLSIWDEAFSTSAYLVNRLPTHVLNQLSPLEKLFGRKPNYPSLK 121
           RHIM+MG+TLLSQ TLPLS WDEAF TS YL+N LPT VL+ +SPLEKLF RKPN+P L+
Sbjct: 260 RHIMEMGLTLLSQATLPLSFWDEAFFTSVYLINLLPTPVLDNISPLEKLFCRKPNFPFLR 319

Query: 122 VFGCQCYPLIRPYQSHKLSYRSKP 146
           VFGC+CYP  RPYQSHKLS RS P
Sbjct: 320 VFGCKCYPYFRPYQSHKLSLRSTP 343

[Close]

BLAST of Cmc01g0008811 vs. NCBI nr
Match: GAU32278.1 (hypothetical protein TSUD_62940 [Trifolium subterraneum])

HSP 1 Score: 183.7 bits (465), Expect = 1.1e-42
Identity = 85/141 (60.28%), Postives = 105/141 (74.47%), Query Frame = 0


Query: 3   FQKFKTLTEKQLGRSIMSIQTDGGSEFKTFISYLNNHGIEHRLTCLHTLQQNGIVERKHR 62
           F++FKT+ E QLG S+ S+QTD G EF+ F SYL+N GI HRL C HT  QNG+VERKHR
Sbjct: 624 FKQFKTMAELQLGHSLKSLQTDWGGEFRPFTSYLDNLGIVHRLICPHTHHQNGVVERKHR 683

Query: 63  HIMDMGITLLSQVTLPLSIWDEAFSTSAYLVNRLPTHVLNQLSPLEKLFGRKPNYPSLKV 122
           H++D+G+TLLSQ  LPL+ WD AF T+ +L+NRLPT  LN   P   LF + P+Y SLKV
Sbjct: 684 HVVDLGLTLLSQANLPLTYWDHAFLTAVHLINRLPTASLNFKVPYTTLFQKDPDYNSLKV 743

Query: 123 FGCQCYPLIRPYQSHKLSYRS 144
           FG  C+PLIRPY SHK  +RS
Sbjct: 744 FGSACFPLIRPYNSHKFDFRS 764

[Close]

BLAST of Cmc01g0008811 vs. NCBI nr
Match: RVW60229.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 178.3 bits (451), Expect = 4.7e-41
Identity = 80/144 (55.56%), Postives = 102/144 (70.83%), Query Frame = 0


Query: 2   AFQKFKTLTEKQLGRSIMSIQTDGGSEFKTFISYLNNHGIEHRLTCLHTLQQNGIVERKH 61
           AF  FK   E Q G  + + QTD G EF++  +Y   +GI HRL+C HT +QNGI+ERKH
Sbjct: 764 AFLMFKAQAELQFGCKLKTFQTDWGGEFRSLKTYFEQNGIIHRLSCPHTSKQNGIIERKH 823

Query: 62  RHIMDMGITLLSQVTLPLSIWDEAFSTSAYLVNRLPTHVLNQLSPLEKLFGRKPNYPSLK 121
           RHI+++G+TLL+Q +LPL  W +AFST+ +L+NRLPT VL Q  P E LF  KPNY  LK
Sbjct: 824 RHIVELGLTLLAQASLPLKYWPDAFSTAVFLINRLPTEVLKQKCPYEFLFNSKPNYSQLK 883

Query: 122 VFGCQCYPLIRPYQSHKLSYRSKP 146
           VFGC C+P +RPY  HKL +RS P
Sbjct: 884 VFGCLCFPHLRPYNKHKLDFRSSP 907

[Close]

BLAST of Cmc01g0008811 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.6e-37
Identity = 71/139 (51.08%), Postives = 93/139 (66.91%), Query Frame = 0


Query: 6   FKTLTEKQLGRSIMSIQTDGGSEFKTFISYLNNHGIEHRLTCLHTLQQNGIVERKHRHIM 65
           FK+L E +    I ++ +D G EF     YL+ HGI H  +  HT + NG+ ERKHRHI+
Sbjct: 553 FKSLVENRFQTRIGTLYSDNGGEFVVLRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIV 612

Query: 66  DMGITLLSQVTLPLSIWDEAFSTSAYLVNRLPTHVLNQLSPLEKLFGRKPNYPSLKVFGC 125
           +MG+TLLS  ++P + W  AFS + YL+NRLPT +L   SP +KLFG+ PNY  LKVFGC
Sbjct: 613 EMGLTLLSHASVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGC 672

Query: 126 QCYPLIRPYQSHKLSYRSK 145
            CYP +RPY  HKL  +SK
Sbjct: 673 ACYPWLRPYNRHKLEDKSK 691

[Close]

BLAST of Cmc01g0008811 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.2e-34
Identity = 67/142 (47.18%), Postives = 89/142 (62.68%), Query Frame = 0


Query: 3   FQKFKTLTEKQLGRSIMSIQTDGGSEFKTFISYLNNHGIEHRLTCLHTLQQNGIVERKHR 62
           F  FK L E +    I +  +D G EF     Y + HGI H  +  HT + NG+ ERKHR
Sbjct: 571 FITFKNLLENRFQTRIGTFYSDNGGEFVALWEYFSQHGISHLTSPPHTPEHNGLSERKHR 630

Query: 63  HIMDMGITLLSQVTLPLSIWDEAFSTSAYLVNRLPTHVLNQLSPLEKLFGRKPNYPSLKV 122
           HI++ G+TLLS  ++P + W  AF+ + YL+NRLPT +L   SP +KLFG  PNY  L+V
Sbjct: 631 HIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKLRV 690

Query: 123 FGCQCYPLIRPYQSHKLSYRSK 145
           FGC CYP +RPY  HKL  +S+
Sbjct: 691 FGCACYPWLRPYNQHKLDDKSR 712

[Close]

BLAST of Cmc01g0008811 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 6.2e-20
Identity = 53/145 (36.55%), Postives = 79/145 (54.48%), Query Frame = 0


Query: 3   FQKFKTLTEKQLGRSIMSIQTDGGSEF--KTFISYLNNHGIEHRLTCLHTLQQNGIVERK 62
           FQKF  L E++ GR +  +++D G E+  + F  Y ++HGI H  T   T Q NG+ ER 
Sbjct: 529 FQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERM 588

Query: 63  HRHIMDMGITLLSQVTLPLSIWDEAFSTSAYLVNRLPTHVLNQLSPLEKLFGRKPNYPSL 122
           +R I++   ++L    LP S W EA  T+ YL+NR P+  L    P      ++ +Y  L
Sbjct: 589 NRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHL 648

Query: 123 KVFGCQCYPLIRPYQSHKLSYRSKP 146
           KVFGC+ +  +   Q  KL  +S P
Sbjct: 649 KVFGCRAFAHVPKEQRTKLDDKSIP 673

[Close]

BLAST of Cmc01g0008811 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 73.6 bits (179), Expect = 2.1e-12
Identity = 45/137 (32.85%), Postives = 65/137 (47.45%), Query Frame = 0


Query: 3   FQKFKTLTEKQLGRSIMSIQTDGGSEF--KTFISYLNNHGIEHRLTCLHTLQQNGIVERK 62
           FQ F   +E      ++ +  D G E+       +    GI + LT  HT Q NG+ ER 
Sbjct: 529 FQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERM 588

Query: 63  HRHIMDMGITLLSQVTLPLSIWDEAFSTSAYLVNRLPTHVL--NQLSPLEKLFGRKPNYP 122
            R I +   T++S   L  S W EA  T+ YL+NR+P+  L  +  +P E    +KP   
Sbjct: 589 IRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLK 648

Query: 123 SLKVFGCQCYPLIRPYQ 136
            L+VFG   Y  I+  Q
Sbjct: 649 HLRVFGATVYVHIKNKQ 665

[Close]

BLAST of Cmc01g0008811 vs. ExPASy TrEMBL
Match: A0A5A7U233 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00060 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 1.1e-56
Identity = 106/145 (73.10%), Postives = 125/145 (86.21%), Query Frame = 0


Query: 1   MAFQKFKTLTEKQLGRSIMSIQTDGGSEFKTFISYLNNHGIEHRLTCLHTLQQNGIVERK 60
           +AFQKFKT  EK LG+SI S+QTDGG+EFK F  +L+ HGIEHR+TC +T +QN IVERK
Sbjct: 601 LAFQKFKTCVEKSLGQSIKSLQTDGGTEFKPFKPFLDQHGIEHRITCPYTSKQNDIVERK 660

Query: 61  HRHIMDMGITLLSQVTLPLSIWDEAFSTSAYLVNRLPTHVLNQLSPLEKLFGRKPNYPSL 120
           HR+IM+MG+TLLSQ TLPLS WDEAFSTS YL+NRLPT VL+ +SPLEKLF RKPN+PSL
Sbjct: 661 HRYIMEMGLTLLSQATLPLSFWDEAFSTSVYLINRLPTPVLDNISPLEKLFCRKPNFPSL 720

Query: 121 KVFGCQCYPLIRPYQSHKLSYRSKP 146
           +VFGC+CYP +RPYQSHKLS RS P
Sbjct: 721 RVFGCKCYPYLRPYQSHKLSLRSTP 745

[Close]

BLAST of Cmc01g0008811 vs. ExPASy TrEMBL
Match: A0A5D3CH97 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00040 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 1.1e-56
Identity = 106/145 (73.10%), Postives = 125/145 (86.21%), Query Frame = 0


Query: 1   MAFQKFKTLTEKQLGRSIMSIQTDGGSEFKTFISYLNNHGIEHRLTCLHTLQQNGIVERK 60
           +AFQKFKT  EK LG+SI S+QTDGG+EFK F  +L+ HGIEHR+TC +T +QN IVERK
Sbjct: 601 LAFQKFKTCVEKSLGQSIKSLQTDGGTEFKPFKPFLDQHGIEHRITCPYTSKQNDIVERK 660

Query: 61  HRHIMDMGITLLSQVTLPLSIWDEAFSTSAYLVNRLPTHVLNQLSPLEKLFGRKPNYPSL 120
           HR+IM+MG+TLLSQ TLPLS WDEAFSTS YL+NRLPT VL+ +SPLEKLF RKPN+PSL
Sbjct: 661 HRYIMEMGLTLLSQATLPLSFWDEAFSTSVYLINRLPTPVLDNISPLEKLFCRKPNFPSL 720

Query: 121 KVFGCQCYPLIRPYQSHKLSYRSKP 146
           +VFGC+CYP +RPYQSHKLS RS P
Sbjct: 721 RVFGCKCYPYLRPYQSHKLSLRSTP 745

[Close]

BLAST of Cmc01g0008811 vs. ExPASy TrEMBL
Match: A0A5A7VFQ6 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00150 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 8.0e-55
Identity = 104/144 (72.22%), Postives = 120/144 (83.33%), Query Frame = 0


Query: 2   AFQKFKTLTEKQLGRSIMSIQTDGGSEFKTFISYLNNHGIEHRLTCLHTLQQNGIVERKH 61
           AFQKFKT  EK LG+SI S+QTDGG+EFK F  +L+ HGIEHR+TC +T +QN IVERKH
Sbjct: 200 AFQKFKTCVEKSLGQSIKSLQTDGGTEFKPFKPFLDQHGIEHRITCPYTSKQNDIVERKH 259

Query: 62  RHIMDMGITLLSQVTLPLSIWDEAFSTSAYLVNRLPTHVLNQLSPLEKLFGRKPNYPSLK 121
           RHIM+MG+TLLSQ TLPLS WDEAF TS YL+N LPT VL+ +SPLEKLF RKPN+P L+
Sbjct: 260 RHIMEMGLTLLSQATLPLSFWDEAFFTSVYLINLLPTPVLDNISPLEKLFCRKPNFPFLR 319

Query: 122 VFGCQCYPLIRPYQSHKLSYRSKP 146
           VFGC+CYP  RPYQSHKLS RS P
Sbjct: 320 VFGCKCYPYFRPYQSHKLSLRSTP 343

[Close]

BLAST of Cmc01g0008811 vs. ExPASy TrEMBL
Match: A0A2Z6MJI3 (Integrase catalytic domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_62940 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 5.4e-43
Identity = 85/141 (60.28%), Postives = 105/141 (74.47%), Query Frame = 0


Query: 3   FQKFKTLTEKQLGRSIMSIQTDGGSEFKTFISYLNNHGIEHRLTCLHTLQQNGIVERKHR 62
           F++FKT+ E QLG S+ S+QTD G EF+ F SYL+N GI HRL C HT  QNG+VERKHR
Sbjct: 624 FKQFKTMAELQLGHSLKSLQTDWGGEFRPFTSYLDNLGIVHRLICPHTHHQNGVVERKHR 683

Query: 63  HIMDMGITLLSQVTLPLSIWDEAFSTSAYLVNRLPTHVLNQLSPLEKLFGRKPNYPSLKV 122
           H++D+G+TLLSQ  LPL+ WD AF T+ +L+NRLPT  LN   P   LF + P+Y SLKV
Sbjct: 684 HVVDLGLTLLSQANLPLTYWDHAFLTAVHLINRLPTASLNFKVPYTTLFQKDPDYNSLKV 743

Query: 123 FGCQCYPLIRPYQSHKLSYRS 144
           FG  C+PLIRPY SHK  +RS
Sbjct: 744 FGSACFPLIRPYNSHKFDFRS 764

[Close]

BLAST of Cmc01g0008811 vs. ExPASy TrEMBL
Match: A0A5A7SY37 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G002980 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 2.3e-41
Identity = 84/120 (70.00%), Postives = 101/120 (84.17%), Query Frame = 0


Query: 3   FQKFKTLTEKQLGRSIMSIQTDGGSEFKTFISYLNNHGIEHRLTCLHTLQQNGIVERKHR 62
           FQKFK   EK LG+SI S+QTDGG+EFK F  +L+ HGIEHR+TC +T +QN IVERKHR
Sbjct: 79  FQKFKACVEKSLGQSIKSLQTDGGAEFKPFNHFLDQHGIEHRITCPYTSKQNDIVERKHR 138

Query: 63  HIMDMGITLLSQVTLPLSIWDEAFSTSAYLVNRLPTHVLNQLSPLEKLFGRKPNYPSLKV 122
           HI+++G+TLLSQ TLPLS WDEAFSTS YL+NRLPT VL+ +S LEKLF RKPN+PSL+V
Sbjct: 139 HIIEIGLTLLSQATLPLSFWDEAFSTSVYLINRLPTPVLDNISLLEKLFCRKPNFPSLRV 198

The following BLAST results are available for this feature:

BLAST of Cmc01g0008811 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048297.1	2.3e-56	73.10	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK10642.1	2.3e-56	73.10	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0067212.1	1.7e-54	72.22	retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]	[more]
GAU32278.1	1.1e-42	60.28	hypothetical protein TSUD_62940 [Trifolium subterraneum]	[more]
RVW60229.1	4.7e-41	55.56	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]

BLAST of Cmc01g0008811 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT94	5.6e-37	51.08	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.2e-34	47.18	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P10978	6.2e-20	36.55	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	2.1e-12	32.85	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of Cmc01g0008811 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U233	1.1e-56	73.10	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CH97	1.1e-56	73.10	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7VFQ6	8.0e-55	72.22	Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuw...	[more]
A0A2Z6MJI3	5.4e-43	60.28	Integrase catalytic domain-containing protein OS=Trifolium subterraneum OX=3900 ...	[more]
A0A5A7SY37	2.3e-41	70.00	Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuw...	[more]

BLAST of Cmc01g0008811 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 2..123 e-value: 7.6E-20 score: 73.0
None	No IPR available	PANTHER	PTHR11439:SF324	RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 3..141
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 3..141
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..114 score: 16.094744
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 3..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0008811.1	Cmc01g0008811.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding