Cmc01g0008801 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0008801
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	CMiso1.1chr01: 3605014 .. 3605436 (-)
RNA-Seq Expression	Cmc01g0008801
Synteny	Cmc01g0008801

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAGAATTTCTAGCTTTAAAGAAAAATAATATTTGGAATCTCACTCCGCAACAACGTAATCAGAAAACTGTTGGGTATAAATGGGTTTTTAAAATTAAACAGAATTCTGATGGATCAATTGCTAGATATAAAGCTCGATTAGTTGTTAAAGGGTTTCATCAAACACTAAATATTGATTACAATGAAACCTTCAGCCCTGTAGTGAAACCAGCTACAATTCGTATGTTATTAACAATAGCTCTTACGAAAGGATGGATTATTAAACAACTTGATGCTAATAATGCATTTTTACATGGTGAATTAGAAGAAGATGTGTACATGGAAAAACCTTATGACTTTGAAATAAAGGCTTCTCATTCTCTTGTTTGTCATCTACGAAAAGCCATTTATAGGTTAAAACAAGCACCCCGAGCATGA

mRNA sequence

ATGGAAGAAGAATTTCTAGCTTTAAAGAAAAATAATATTTGGAATCTCACTCCGCAACAACGTAATCAGAAAACTGTTGGGTATAAATGGGTTTTTAAAATTAAACAGAATTCTGATGGATCAATTGCTAGATATAAAGCTCGATTAGTTGTTAAAGGGTTTCATCAAACACTAAATATTGATTACAATGAAACCTTCAGCCCTGTAGTGAAACCAGCTACAATTCGTATGTTATTAACAATAGCTCTTACGAAAGGATGGATTATTAAACAACTTGATGCTAATAATGCATTTTTACATGGTGAATTAGAAGAAGATGTGTACATGGAAAAACCTTATGACTTTGAAATAAAGGCTTCTCATTCTCTTGTTTGTCATCTACGAAAAGCCATTTATAGGTTAAAACAAGCACCCCGAGCATGA

Coding sequence (CDS)

ATGGAAGAAGAATTTCTAGCTTTAAAGAAAAATAATATTTGGAATCTCACTCCGCAACAACGTAATCAGAAAACTGTTGGGTATAAATGGGTTTTTAAAATTAAACAGAATTCTGATGGATCAATTGCTAGATATAAAGCTCGATTAGTTGTTAAAGGGTTTCATCAAACACTAAATATTGATTACAATGAAACCTTCAGCCCTGTAGTGAAACCAGCTACAATTCGTATGTTATTAACAATAGCTCTTACGAAAGGATGGATTATTAAACAACTTGATGCTAATAATGCATTTTTACATGGTGAATTAGAAGAAGATGTGTACATGGAAAAACCTTATGACTTTGAAATAAAGGCTTCTCATTCTCTTGTTTGTCATCTACGAAAAGCCATTTATAGGTTAAAACAAGCACCCCGAGCATGA

Protein sequence

MEEEFLALKKNNIWNLTPQQRNQKTVGYKWVFKIKQNSDGSIARYKARLVVKGFHQTLNIDYNETFSPVVKPATIRMLLTIALTKGWIIKQLDANNAFLHGELEEDVYMEKPYDFEIKASHSLVCHLRKAIYRLKQAPRA

Homology

[Close]

BLAST of Cmc01g0008801 vs. NCBI nr
Match: KAA0052371.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK09417.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 213.0 bits (541), Expect = 1.7e-51
Identity = 103/140 (73.57%), Postives = 118/140 (84.29%), Query Frame = 0


Query: 1   MEEEFLALKKNNIWNLTPQQRNQKTVGYKWVFKIKQNSDGSIARYKARLVVKGFHQTLNI 60
           MEEEF AL+KN+ W LTPQ  NQK VG KWVFKIK+NS G IARYKARLV KGFHQT NI
Sbjct: 1   MEEEFEALQKNDTWRLTPQNPNQKIVGCKWVFKIKRNSYGPIARYKARLVAKGFHQTPNI 60

Query: 61  DYNETFSPVVKPATIRMLLTIALTKGWIIKQLDANNAFLHGELEEDVYMEKPYDFEIKAS 120
           DYNETFSPVVK  TI MLLTIA+ KGW I+QLD NNAFLHG L+E+VYME+ + FE+K+S
Sbjct: 61  DYNETFSPVVKSITICMLLTIAIMKGWSIRQLDVNNAFLHGNLDENVYMEQIFGFEVKSS 120

Query: 121 HSLVCHLRKAIYRLKQAPRA 141
           + +VCHL+KA+Y LKQAPRA
Sbjct: 121 YPMVCHLKKALYGLKQAPRA 140

[Close]

BLAST of Cmc01g0008801 vs. NCBI nr
Match: TYK18915.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 209.5 bits (532), Expect = 1.8e-50
Identity = 100/137 (72.99%), Postives = 115/137 (83.94%), Query Frame = 0


Query: 1   MEEEFLALKKNNIWNLTPQQRNQKTVGYKWVFKIKQNSDGSIARYKARLVVKGFHQTLNI 60
           MEEEF AL+KN  W+L PQ  NQK VG KWVFKIK+NS GSI+RYKARLV KGFHQT NI
Sbjct: 259 MEEEFKALQKNGTWSLIPQNPNQKIVGCKWVFKIKRNSYGSISRYKARLVAKGFHQTHNI 318

Query: 61  DYNETFSPVVKPATIRMLLTIALTKGWIIKQLDANNAFLHGELEEDVYMEKPYDFEIKAS 120
           DYNETFSPVVKP TIRMLLTI + KGW I QLD NNAFLHG L+E+VYME+P+ FE+K+S
Sbjct: 319 DYNETFSPVVKPITIRMLLTITIMKGWSIHQLDVNNAFLHGNLDENVYMEQPFGFEVKSS 378

Query: 121 HSLVCHLRKAIYRLKQA 138
           + +VC L+KA+Y LKQA
Sbjct: 379 YPVVCRLKKALYGLKQA 395

[Close]

BLAST of Cmc01g0008801 vs. NCBI nr
Match: PNX78635.1 (hypothetical protein L195_g034613, partial [Trifolium pratense])

HSP 1 Score: 182.6 bits (462), Expect = 2.4e-42
Identity = 87/140 (62.14%), Postives = 104/140 (74.29%), Query Frame = 0


Query: 1   MEEEFLALKKNNIWNLTPQQRNQKTVGYKWVFKIKQNSDGSIARYKARLVVKGFHQTLNI 60
           M +EF AL KN  W+L P Q N   +G KWVF+IK+N DGSIARYKARLV KGFHQ   I
Sbjct: 113 MSDEFTALMKNGTWSLVPPQSNYNIIGCKWVFRIKRNPDGSIARYKARLVAKGFHQRPGI 172

Query: 61  DYNETFSPVVKPATIRMLLTIALTKGWIIKQLDANNAFLHGELEEDVYMEKPYDFEIKAS 120
           D+ +TFSPV+KP TI+M+L IAL+KGWII Q+D NNAFLHG + EDVYM +P  F  +  
Sbjct: 173 DFKDTFSPVIKPQTIKMVLCIALSKGWIISQMDVNNAFLHGTISEDVYMSQPAGFVHQNF 232

Query: 121 HSLVCHLRKAIYRLKQAPRA 141
            + VC L KA+Y LKQAPRA
Sbjct: 233 PTHVCKLHKALYGLKQAPRA 252

[Close]

BLAST of Cmc01g0008801 vs. NCBI nr
Match: PRQ16261.1 (putative RNA-directed DNA polymerase [Rosa chinensis])

HSP 1 Score: 179.1 bits (453), Expect = 2.6e-41
Identity = 87/140 (62.14%), Postives = 104/140 (74.29%), Query Frame = 0


Query: 1   MEEEFLALKKNNIWNLTPQQRNQKTVGYKWVFKIKQNSDGSIARYKARLVVKGFHQTLNI 60
           M EE  AL KNN W L P   +Q TVG KWVF++K+ SDGSI RYKARLV KGFHQ   I
Sbjct: 425 MTEEINALLKNNTWTLVPPSSSQNTVGCKWVFRVKRKSDGSIERYKARLVAKGFHQQQGI 484

Query: 61  DYNETFSPVVKPATIRMLLTIALTKGWIIKQLDANNAFLHGELEEDVYMEKPYDFEIKAS 120
           DY ET+SPV+KPATIR +L+IA+++GW ++QLD  NAFLHG L EDVYM +P  F  ++ 
Sbjct: 485 DYGETYSPVIKPATIRTVLSIAVSRGWSLRQLDVKNAFLHGVLTEDVYMVQPPGFVDQSR 544

Query: 121 HSLVCHLRKAIYRLKQAPRA 141
            S VC L KA+Y LKQAPRA
Sbjct: 545 PSHVCKLNKALYGLKQAPRA 564

[Close]

BLAST of Cmc01g0008801 vs. NCBI nr
Match: MCH94031.1 (retrovirus-related pol polyprotein from transposon TNT 1-94 [Trifolium medium])

HSP 1 Score: 177.9 bits (450), Expect = 5.9e-41
Identity = 84/139 (60.43%), Postives = 108/139 (77.70%), Query Frame = 0


Query: 1   MEEEFLALKKNNIWNLTPQQRNQKTVGYKWVFKIKQNSDGSIARYKARLVVKGFHQTLNI 60
           M+ E+ AL +NN W+L P   N++ +G KWVF++K+N DG++ RYKARLV KGFHQ    
Sbjct: 49  MQAEYDALLQNNTWSLVPLPPNRQAIGCKWVFRVKENPDGTVNRYKARLVAKGFHQRQGF 108

Query: 61  DYNETFSPVVKPATIRMLLTIALTKGWIIKQLDANNAFLHGELEEDVYMEKPYDFEIKAS 120
           D+ ETFSPVVKP TIR++LTIA+TKGW I+QLD NNAFL+G L+E+VYM++P  FE  + 
Sbjct: 109 DFLETFSPVVKPVTIRVILTIAITKGWSIQQLDVNNAFLNGILDEEVYMQQPQGFE-SSD 168

Query: 121 HSLVCHLRKAIYRLKQAPR 140
            SLVC L KA+Y LKQAPR
Sbjct: 169 SSLVCRLHKALYGLKQAPR 186

[Close]

BLAST of Cmc01g0008801 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.6e-33
Identity = 74/141 (52.48%), Postives = 95/141 (67.38%), Query Frame = 0


Query: 1    MEEEFLALKKNNIWNLTPQQRNQKT-VGYKWVFKIKQNSDGSIARYKARLVVKGFHQTLN 60
            M  E  A   N+ W+L P   +  T VG +W+F  K NSDGS+ RYKARLV KG++Q   
Sbjct: 972  MGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPG 1031

Query: 61   IDYNETFSPVVKPATIRMLLTIALTKGWIIKQLDANNAFLHGELEEDVYMEKPYDFEIKA 120
            +DY ETFSPV+K  +IR++L +A+ + W I+QLD NNAFL G L +DVYM +P  F  K 
Sbjct: 1032 LDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKD 1091

Query: 121  SHSLVCHLRKAIYRLKQAPRA 141
              + VC LRKA+Y LKQAPRA
Sbjct: 1092 RPNYVCKLRKALYGLKQAPRA 1112

[Close]

BLAST of Cmc01g0008801 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 4.7e-33
Identity = 67/139 (48.20%), Postives = 96/139 (69.06%), Query Frame = 0


Query: 1   MEEEFLALKKNNIWNLTPQQRNQKTVGYKWVFKIKQNSDGSIARYKARLVVKGFHQTLNI 60
           M+EE  +L+KN  + L    + ++ +  KWVFK+K++ D  + RYKARLVVKGF Q   I
Sbjct: 830 MQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGI 889

Query: 61  DYNETFSPVVKPATIRMLLTIALTKGWIIKQLDANNAFLHGELEEDVYMEKPYDFEIKAS 120
           D++E FSPVVK  +IR +L++A +    ++QLD   AFLHG+LEE++YME+P  FE+   
Sbjct: 890 DFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGK 949

Query: 121 HSLVCHLRKAIYRLKQAPR 140
             +VC L K++Y LKQAPR
Sbjct: 950 KHMVCKLNKSLYGLKQAPR 968

[Close]

BLAST of Cmc01g0008801 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 8.0e-33
Identity = 74/141 (52.48%), Postives = 93/141 (65.96%), Query Frame = 0


Query: 1    MEEEFLALKKNNIWNLTPQQRNQKT-VGYKWVFKIKQNSDGSIARYKARLVVKGFHQTLN 60
            M  E  A   N+ W+L P      T VG +W+F  K NSDGS+ RYKARLV KG++Q   
Sbjct: 955  MGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPG 1014

Query: 61   IDYNETFSPVVKPATIRMLLTIALTKGWIIKQLDANNAFLHGELEEDVYMEKPYDFEIKA 120
            +DY ETFSPV+K  +IR++L +A+ + W I+QLD NNAFL G L ++VYM +P  F  K 
Sbjct: 1015 LDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKD 1074

Query: 121  SHSLVCHLRKAIYRLKQAPRA 141
                VC LRKAIY LKQAPRA
Sbjct: 1075 RPDYVCRLRKAIYGLKQAPRA 1095

[Close]

BLAST of Cmc01g0008801 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 115.5 bits (288), Expect = 4.7e-25
Identity = 59/136 (43.38%), Postives = 81/136 (59.56%), Query Frame = 0


Query: 4    EFLALKKNNIWNLTPQQRNQKTVGYKWVFKIKQNSDGSIARYKARLVVKGFHQTLNIDYN 63
            E  A K NN W +T +  N+  V  +WVF +K N  G+  RYKARLV +GF Q   IDY 
Sbjct: 913  ELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYE 972

Query: 64   ETFSPVVKPATIRMLLTIALTKGWIIKQLDANNAFLHGELEEDVYMEKPYDFEIKASHSL 123
            ETF+PV + ++ R +L++ +     + Q+D   AFL+G L+E++YM  P    I  +   
Sbjct: 973  ETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQG--ISCNSDN 1032

Query: 124  VCHLRKAIYRLKQAPR 140
            VC L KAIY LKQA R
Sbjct: 1033 VCKLNKAIYGLKQAAR 1046

[Close]

BLAST of Cmc01g0008801 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-17
Identity = 45/82 (54.88%), Postives = 56/82 (68.29%), Query Frame = 0


Query: 1   MEEEFLALKKNNIWNLTPQQRNQKTVGYKWVFKIKQNSDGSIARYKARLVVKGFHQTLNI 60
           M+EE  AL +N  W L P   NQ  +G KWVFK K +SDG++ R KARLV KGFHQ   I
Sbjct: 44  MQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGI 103

Query: 61  DYNETFSPVVKPATIRMLLTIA 83
            + ET+SPVV+ ATIR +L +A
Sbjct: 104 YFVETYSPVVRTATIRTILNVA 125

[Close]

BLAST of Cmc01g0008801 vs. ExPASy TrEMBL
Match: A0A5A7UFS3 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold504G00520 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 8.0e-52
Identity = 103/140 (73.57%), Postives = 118/140 (84.29%), Query Frame = 0


Query: 1   MEEEFLALKKNNIWNLTPQQRNQKTVGYKWVFKIKQNSDGSIARYKARLVVKGFHQTLNI 60
           MEEEF AL+KN+ W LTPQ  NQK VG KWVFKIK+NS G IARYKARLV KGFHQT NI
Sbjct: 1   MEEEFEALQKNDTWRLTPQNPNQKIVGCKWVFKIKRNSYGPIARYKARLVAKGFHQTPNI 60

Query: 61  DYNETFSPVVKPATIRMLLTIALTKGWIIKQLDANNAFLHGELEEDVYMEKPYDFEIKAS 120
           DYNETFSPVVK  TI MLLTIA+ KGW I+QLD NNAFLHG L+E+VYME+ + FE+K+S
Sbjct: 61  DYNETFSPVVKSITICMLLTIAIMKGWSIRQLDVNNAFLHGNLDENVYMEQIFGFEVKSS 120

Query: 121 HSLVCHLRKAIYRLKQAPRA 141
           + +VCHL+KA+Y LKQAPRA
Sbjct: 121 YPMVCHLKKALYGLKQAPRA 140

[Close]

BLAST of Cmc01g0008801 vs. ExPASy TrEMBL
Match: A0A5D3D5W0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G001310 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 8.8e-51
Identity = 100/137 (72.99%), Postives = 115/137 (83.94%), Query Frame = 0


Query: 1   MEEEFLALKKNNIWNLTPQQRNQKTVGYKWVFKIKQNSDGSIARYKARLVVKGFHQTLNI 60
           MEEEF AL+KN  W+L PQ  NQK VG KWVFKIK+NS GSI+RYKARLV KGFHQT NI
Sbjct: 259 MEEEFKALQKNGTWSLIPQNPNQKIVGCKWVFKIKRNSYGSISRYKARLVAKGFHQTHNI 318

Query: 61  DYNETFSPVVKPATIRMLLTIALTKGWIIKQLDANNAFLHGELEEDVYMEKPYDFEIKAS 120
           DYNETFSPVVKP TIRMLLTI + KGW I QLD NNAFLHG L+E+VYME+P+ FE+K+S
Sbjct: 319 DYNETFSPVVKPITIRMLLTITIMKGWSIHQLDVNNAFLHGNLDENVYMEQPFGFEVKSS 378

Query: 121 HSLVCHLRKAIYRLKQA 138
           + +VC L+KA+Y LKQA
Sbjct: 379 YPVVCRLKKALYGLKQA 395

[Close]

BLAST of Cmc01g0008801 vs. ExPASy TrEMBL
Match: A0A2K3LJB9 (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g034613 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.2e-42
Identity = 87/140 (62.14%), Postives = 104/140 (74.29%), Query Frame = 0


Query: 1   MEEEFLALKKNNIWNLTPQQRNQKTVGYKWVFKIKQNSDGSIARYKARLVVKGFHQTLNI 60
           M +EF AL KN  W+L P Q N   +G KWVF+IK+N DGSIARYKARLV KGFHQ   I
Sbjct: 113 MSDEFTALMKNGTWSLVPPQSNYNIIGCKWVFRIKRNPDGSIARYKARLVAKGFHQRPGI 172

Query: 61  DYNETFSPVVKPATIRMLLTIALTKGWIIKQLDANNAFLHGELEEDVYMEKPYDFEIKAS 120
           D+ +TFSPV+KP TI+M+L IAL+KGWII Q+D NNAFLHG + EDVYM +P  F  +  
Sbjct: 173 DFKDTFSPVIKPQTIKMVLCIALSKGWIISQMDVNNAFLHGTISEDVYMSQPAGFVHQNF 232

Query: 121 HSLVCHLRKAIYRLKQAPRA 141
            + VC L KA+Y LKQAPRA
Sbjct: 233 PTHVCKLHKALYGLKQAPRA 252

[Close]

BLAST of Cmc01g0008801 vs. ExPASy TrEMBL
Match: A0A2P6P2Y0 (Putative RNA-directed DNA polymerase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0182281 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.3e-41
Identity = 87/140 (62.14%), Postives = 104/140 (74.29%), Query Frame = 0


Query: 1   MEEEFLALKKNNIWNLTPQQRNQKTVGYKWVFKIKQNSDGSIARYKARLVVKGFHQTLNI 60
           M EE  AL KNN W L P   +Q TVG KWVF++K+ SDGSI RYKARLV KGFHQ   I
Sbjct: 425 MTEEINALLKNNTWTLVPPSSSQNTVGCKWVFRVKRKSDGSIERYKARLVAKGFHQQQGI 484

Query: 61  DYNETFSPVVKPATIRMLLTIALTKGWIIKQLDANNAFLHGELEEDVYMEKPYDFEIKAS 120
           DY ET+SPV+KPATIR +L+IA+++GW ++QLD  NAFLHG L EDVYM +P  F  ++ 
Sbjct: 485 DYGETYSPVIKPATIRTVLSIAVSRGWSLRQLDVKNAFLHGVLTEDVYMVQPPGFVDQSR 544

Query: 121 HSLVCHLRKAIYRLKQAPRA 141
            S VC L KA+Y LKQAPRA
Sbjct: 545 PSHVCKLNKALYGLKQAPRA 564

[Close]

BLAST of Cmc01g0008801 vs. ExPASy TrEMBL
Match: A0A392N2S6 (Retrovirus-related pol polyprotein from transposon TNT 1-94 (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0014985 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.9e-41
Identity = 84/139 (60.43%), Postives = 108/139 (77.70%), Query Frame = 0


Query: 1   MEEEFLALKKNNIWNLTPQQRNQKTVGYKWVFKIKQNSDGSIARYKARLVVKGFHQTLNI 60
           M+ E+ AL +NN W+L P   N++ +G KWVF++K+N DG++ RYKARLV KGFHQ    
Sbjct: 49  MQAEYDALLQNNTWSLVPLPPNRQAIGCKWVFRVKENPDGTVNRYKARLVAKGFHQRQGF 108

Query: 61  DYNETFSPVVKPATIRMLLTIALTKGWIIKQLDANNAFLHGELEEDVYMEKPYDFEIKAS 120
           D+ ETFSPVVKP TIR++LTIA+TKGW I+QLD NNAFL+G L+E+VYM++P  FE  + 
Sbjct: 109 DFLETFSPVVKPVTIRVILTIAITKGWSIQQLDVNNAFLNGILDEEVYMQQPQGFE-SSD 168

Query: 121 HSLVCHLRKAIYRLKQAPR 140
            SLVC L KA+Y LKQAPR
Sbjct: 169 SSLVCRLHKALYGLKQAPR 186

[Close]

BLAST of Cmc01g0008801 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 132.9 bits (333), Expect = 2.0e-31
Identity = 65/143 (45.45%), Postives = 97/143 (67.83%), Query Frame = 0


Query: 1   MEEEFLALKKNNIWNLTPQQRNQKTVGYKWVFKIKQNSDGSIARYKARLVVKGFHQTLNI 60
           M++E  A++  + W +     N+K +G KWV+KIK NSDG+I RYKARLV KG+ Q   I
Sbjct: 102 MDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGI 161

Query: 61  DYNETFSPVVKPATIRMLLTIALTKGWIIKQLDANNAFLHGELEEDVYMEKPYDFEIKAS 120
           D+ ETFSPV K  +++++L I+    + + QLD +NAFL+G+L+E++YM+ P  +  +  
Sbjct: 162 DFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQG 221

Query: 121 HSL----VCHLRKAIYRLKQAPR 140
            SL    VC+L+K+IY LKQA R
Sbjct: 222 DSLPPNAVCYLKKSIYGLKQASR 244

[Close]

BLAST of Cmc01g0008801 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 90.9 bits (224), Expect = 8.8e-19
Identity = 45/82 (54.88%), Postives = 56/82 (68.29%), Query Frame = 0


Query: 1   MEEEFLALKKNNIWNLTPQQRNQKTVGYKWVFKIKQNSDGSIARYKARLVVKGFHQTLNI 60
           M+EE  AL +N  W L P   NQ  +G KWVFK K +SDG++ R KARLV KGFHQ   I
Sbjct: 44  MQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGI 103

Query: 61  DYNETFSPVVKPATIRMLLTIA 83
            + ET+SPVV+ ATIR +L +A
Sbjct: 104 YFVETYSPVVRTATIRTILNVA 125

The following BLAST results are available for this feature:

BLAST of Cmc01g0008801 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052371.1	1.7e-51	73.57	putative mitochondrial protein [Cucumis melo var. makuwa] >TYK09417.1 putative m...	[more]
TYK18915.1	1.8e-50	72.99	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
PNX78635.1	2.4e-42	62.14	hypothetical protein L195_g034613, partial [Trifolium pratense]	[more]
PRQ16261.1	2.6e-41	62.14	putative RNA-directed DNA polymerase [Rosa chinensis]	[more]
MCH94031.1	5.9e-41	60.43	retrovirus-related pol polyprotein from transposon TNT 1-94 [Trifolium medium]	[more]

BLAST of Cmc01g0008801 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	1.6e-33	52.48	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P10978	4.7e-33	48.20	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	8.0e-33	52.48	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	4.7e-25	43.38	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92520	1.2e-17	54.88	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc01g0008801 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UFS3	8.0e-52	73.57	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5D3D5W0	8.8e-51	72.99	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A2K3LJB9	1.2e-42	62.14	Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) OS=Tri...	[more]
A0A2P6P2Y0	1.3e-41	62.14	Putative RNA-directed DNA polymerase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7...	[more]
A0A392N2S6	2.9e-41	60.43	Retrovirus-related pol polyprotein from transposon TNT 1-94 (Fragment) OS=Trifol...	[more]

BLAST of Cmc01g0008801 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.0e-31	45.45	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	8.8e-19	54.88	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 11..139 e-value: 2.1E-40 score: 138.9
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..140
None	No IPR available	PANTHER	PTHR11439:SF351	CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8	coord: 1..140
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 11..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0008801.1	Cmc01g0008801.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0034061	DNA polymerase activity
molecular_function	GO:0043167	ion binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016491	oxidoreductase activity