Cmc01g0008131 (gene) Melon (Charmono) v1.1

Overview
NameCmc01g0008131
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionUnknown protein
LocationCMiso1.1chr01: 3152846 .. 3154259 (+)
RNA-Seq ExpressionCmc01g0008131
SyntenyCmc01g0008131
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTATGAGTTATGAGAAAGCCCGTAACACCCAAGTTCCTTTCTTTTTATGTTATTTAATATTTAGCTTCAATTATTATGTCATATCTTCATTTGGGTAGGGCTTTAATTATACCAAACTTAACTAATGAAACATTGAGATTTAGTTGAAAAATATCAAAACTTTTAAGATTAGATGAACTAACAAGTTAGATATGTATATTGTTGGTACTAATTTCACTACCTTACTCTAAAGCTAACTGTTTTATCTAACAATTCCAAATACTGGATTTTCTCACTAACTATTCTTCCCTCTTCCTCTAAGTCATCTAAATCATTTCTACTAAAATTTAATTCATCTTCATCTTCACCATCTACATAGCTTCTGATTGTGATCCAATTCTCATCTCCAAATTCCCACTTAATTTCTCCTGAAAACGTAGCCAGTCGTTCGATTCTGTCATCATCCTCGTCCTCGTCGTCCCATTGCTCTGTTTTCAACAAAGTTTCTGATTCTTCTTCCAAAGAATTCCAGAGGCTTTGATCTAAAATACTCGTCGGAGATTCAGAATATGAATGTAATTCCTTGATTTCCTCCAACCCAGAACTCAATTCCCCCAAAAATGGATGTTCAAGAAGTTGACTCGCACTCCATCGTTCGGTTGCTTCCCTTCTCAAGCATTTCCTTAAAAAATCATTTCCTTTCTCTGACAGAAAGCTCGGAACTTCCGGGGACTCGCCAGAATATCCGATCCTGTACAACACCGAAACTGGGTCGTCGGTAGTTTTCCATGGTAGAGCGCCAGTGACCATTTCGATTAATGTACACCCAAGTGCCCATATGTCAGAGGAAATCCCCTGTTTTTCCCCACGCGCCACCTCCGGTGCCATGAACATCGGCGTTCCCCCTTTTACTGCCTCGGCCTCACAAACCCATTTGGAGCATCCAAAATCAGCAATCTTCAACCCATCTCCAGCGATTAAAATGTTCTTAGCTTTGATATCACAATGCACCAACCCCTGTTTGTGCAAGTACTCCAATCCTCTAACAATTTCACGAGTGTAAAACGCCGCCGTTGCCTCCTTAATCCGGCCACCACGCCGGAATATTTCATCGGTGAGAGTACCACCGTCGGCGTACTCCATGAAGAGATTGTACATTAGCTTCCCATTTTCTCTCGTTACATCGAATCCCCTGTAGCCCACAATTGAAGGGTGGGACAGGGAAGAAAGAATCCTTTGCTCTGTTTTCAAGAAGTCTGATTTGAGAAGCTCGGCGGACTTGACGGCGAATAGTTCGCCGGAGGATGCGGTGGAGGCGAGGTAGACGGTGGCGGAGGAGCCGTTGCCGACGGGGGATCGTCGGGTCCAGGCCATAGAGGAGGTTTTGTTGGTGAAAGGGGAAAATGGGGGAAAGAGTATAAATAGTGGGATTTG

mRNA sequence

ATTATGAGTTATGAGAAAGCCCGTAACACCCAAGTTCCTTTCTTTTTATGTTATTTAATATTTAGCTTCAATTATTATGTCATATCTTCATTTGGGTAGGGCTTTAATTATACCAAACTTAACTAATGAAACATTGAGATTTAGTTGAAAAATATCAAAACTTTTAAGATTAGATGAACTAACAAGTTAGATATGTATATTGTTGGTACTAATTTCACTACCTTACTCTAAAGCTAACTGTTTTATCTAACAATTCCAAATACTGGATTTTCTCACTAACTATTCTTCCCTCTTCCTCTAAGTCATCTAAATCATTTCTACTAAAATTTAATTCATCTTCATCTTCACCATCTACATAGCTTCTGATTGTGATCCAATTCTCATCTCCAAATTCCCACTTAATTTCTCCTGAAAACGTAGCCAGTCGTTCGATTCTGTCATCATCCTCGTCCTCGTCGTCCCATTGCTCTGTTTTCAACAAAGTTTCTGATTCTTCTTCCAAAGAATTCCAGAGGCTTTGATCTAAAATACTCGTCGGAGATTCAGAATATGAATGTAATTCCTTGATTTCCTCCAACCCAGAACTCAATTCCCCCAAAAATGGATGTTCAAGAAGTTGACTCGCACTCCATCGTTCGGTTGCTTCCCTTCTCAAGCATTTCCTTAAAAAATCATTTCCTTTCTCTGACAGAAAGCTCGGAACTTCCGGGGACTCGCCAGAATATCCGATCCTGTACAACACCGAAACTGGGTCGTCGGTAGTTTTCCATGGTAGAGCGCCAGTGACCATTTCGATTAATGTACACCCAAGTGCCCATATGTCAGAGGAAATCCCCTGTTTTTCCCCACGCGCCACCTCCGGTGCCATGAACATCGGCGTTCCCCCTTTTACTGCCTCGGCCTCACAAACCCATTTGGAGCATCCAAAATCAGCAATCTTCAACCCATCTCCAGCGATTAAAATGTTCTTAGCTTTGATATCACAATGCACCAACCCCTGTTTGTGCAAGTACTCCAATCCTCTAACAATTTCACGAGTGTAAAACGCCGCCGTTGCCTCCTTAATCCGGCCACCACGCCGGAATATTTCATCGGTGAGAGTACCACCGTCGGCGTACTCCATGAAGAGATTGTACATTAGCTTCCCATTTTCTCTCGTTACATCGAATCCCCTGTAGCCCACAATTGAAGGGTGGGACAGGGAAGAAAGAATCCTTTGCTCTGTTTTCAAGAAGTCTGATTTGAGAAGCTCGGCGGACTTGACGGCGAATAGTTCGCCGGAGGATGCGGTGGAGGCGAGGTAGACGGTGGCGGAGGAGCCGTTGCCGACGGGGGATCGTCGGGTCCAGGCCATAGAGGAGGTTTTGTTGGTGAAAGGGGAAAATGGGGGAAAGAGTATAAATAGTGGGATTTG

Coding sequence (CDS)

ATGTCAGAGGAAATCCCCTGTTTTTCCCCACGCGCCACCTCCGGTGCCATGAACATCGGCGTTCCCCCTTTTACTGCCTCGGCCTCACAAACCCATTTGGAGCATCCAAAATCAGCAATCTTCAACCCATCTCCAGCGATTAAAATGTTCTTAGCTTTGATATCACAATGCACCAACCCCTGTTTGTGCAAGTACTCCAATCCTCTAACAATTTCACGAGTGTAA

Protein sequence

MSEEIPCFSPRATSGAMNIGVPPFTASASQTHLEHPKSAIFNPSPAIKMFLALISQCTNPCLCKYSNPLTISRV
Homology
BLAST of Cmc01g0008131 vs. NCBI nr
Match: PNT72662.1 (LOW QUALITY PROTEIN: hypothetical protein BRADI_2g47501v3 [Brachypodium distachyon])

HSP 1 Score: 68.6 bits (166), Expect = 2.7e-08
Identity = 38/72 (52.78%), Postives = 45/72 (62.50%), Query Frame = 0

Query: 2   SEEIPCFSPRATSGAMNIGVPPFTASASQTHLEHPKS-AIFNPSPAIKMFLALISQCTNP 61
           S+ +PC SPRATSGAMN GVPP   S   T L  PKS ++  PSP I  FLAL S CT+ 
Sbjct: 138 SDAVPCSSPRATSGAMNAGVPPI-GSKESTGLAQPKSVSLARPSPPITTFLALTSPCTSD 197

Query: 62  CLCKYSNPLTIS 73
              +YS+P   S
Sbjct: 198 LAWRYSSPRATS 208

BLAST of Cmc01g0008131 vs. NCBI nr
Match: KQK05071.2 (hypothetical protein BRADI_2g17802v3 [Brachypodium distachyon])

HSP 1 Score: 65.1 bits (157), Expect = 2.9e-07
Identity = 36/73 (49.32%), Postives = 43/73 (58.90%), Query Frame = 0

Query: 1   MSEEIPCFSPRATSGAMNIGVPPFTASASQTHLEHPKSA-IFNPSPAIKMFLALISQCTN 60
           MS   PC SPRATSGAMN GVPP   +     LE PKSA +  PSP I  FL   S  T+
Sbjct: 145 MSAAGPCSSPRATSGAMNAGVPPRMGAQESAFLEQPKSASLAQPSPPITTFLGFTSPWTS 204

Query: 61  PCLCKYSNPLTIS 73
           P   +Y++P+  S
Sbjct: 205 PAPWRYASPVARS 217

BLAST of Cmc01g0008131 vs. NCBI nr
Match: KAB8083093.1 (hypothetical protein EE612_005193, partial [Oryza sativa] >BAS73879.1 Os01g0699450, partial [Oryza sativa Japonica Group])

HSP 1 Score: 63.9 bits (154), Expect = 6.6e-07
Identity = 37/68 (54.41%), Postives = 44/68 (64.71%), Query Frame = 0

Query: 6  PCFSPRATSGAMNIGVPPFTASASQTHLEHPKS-AIFNPSPAIKMFLALISQCTNPCLCK 65
          PC SPRATSGAMN GVPP   + S T L HPKS ++  PS  I  FLAL S CT+    +
Sbjct: 29 PCSSPRATSGAMNAGVPPIGPAESMT-LAHPKSVSLARPSLPITTFLALTSPCTSEFPWR 88

Query: 66 YSNPLTIS 73
          Y++PL  S
Sbjct: 89 YASPLATS 95

BLAST of Cmc01g0008131 vs. NCBI nr
Match: PUZ55198.1 (hypothetical protein GQ55_5G193000 [Panicum hallii var. hallii])

HSP 1 Score: 62.4 bits (150), Expect = 1.9e-06
Identity = 36/70 (51.43%), Postives = 43/70 (61.43%), Query Frame = 0

Query: 6  PCFSPRATSGAMNIGVPPFTASA-SQTHLEHPKS-AIFNPSPAIKMFLALISQCTNPCLC 65
          PC SPRATSGAMN GVPP        T   HPKS ++  PSP I  FLAL S CT+    
Sbjct: 14 PCCSPRATSGAMNAGVPPIGRHCDGWTGRAHPKSVSLARPSPPITTFLALTSPCTSDRPW 73

Query: 66 KYSNPLTISR 74
          +Y++P  +SR
Sbjct: 74 RYASPRAMSR 83

BLAST of Cmc01g0008131 vs. NCBI nr
Match: KAF2951824.1 (hypothetical protein DAI22_01g292300 [Oryza sativa Japonica Group])

HSP 1 Score: 58.2 bits (139), Expect = 3.6e-05
Identity = 34/55 (61.82%), Postives = 36/55 (65.45%), Query Frame = 0

Query: 6   PCFSPRATSGAMNIGVPPFTASASQTHLEHPKSA-IFNPSPAIKMFLALISQCTN 60
           PC SPRATSGAMN GVPP   S S   L HPKSA +  PS    MFLAL S CT+
Sbjct: 120 PCSSPRATSGAMNAGVPPIGRSES-VLLAHPKSASLARPSAPTMMFLALTSPCTS 173

BLAST of Cmc01g0008131 vs. ExPASy TrEMBL
Match: A0A2K2DEF5 (Uncharacterized protein OS=Brachypodium distachyon OX=15368 GN=BRADI_2g47501v3 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.3e-08
Identity = 38/72 (52.78%), Postives = 45/72 (62.50%), Query Frame = 0

Query: 2   SEEIPCFSPRATSGAMNIGVPPFTASASQTHLEHPKS-AIFNPSPAIKMFLALISQCTNP 61
           S+ +PC SPRATSGAMN GVPP   S   T L  PKS ++  PSP I  FLAL S CT+ 
Sbjct: 138 SDAVPCSSPRATSGAMNAGVPPI-GSKESTGLAQPKSVSLARPSPPITTFLALTSPCTSD 197

Query: 62  CLCKYSNPLTIS 73
              +YS+P   S
Sbjct: 198 LAWRYSSPRATS 208

BLAST of Cmc01g0008131 vs. ExPASy TrEMBL
Match: A0A0Q3G0L4 (Uncharacterized protein OS=Brachypodium distachyon OX=15368 GN=BRADI_2g17802v3 PE=4 SV=2)

HSP 1 Score: 65.1 bits (157), Expect = 1.4e-07
Identity = 36/73 (49.32%), Postives = 43/73 (58.90%), Query Frame = 0

Query: 1   MSEEIPCFSPRATSGAMNIGVPPFTASASQTHLEHPKSA-IFNPSPAIKMFLALISQCTN 60
           MS   PC SPRATSGAMN GVPP   +     LE PKSA +  PSP I  FL   S  T+
Sbjct: 145 MSAAGPCSSPRATSGAMNAGVPPRMGAQESAFLEQPKSASLAQPSPPITTFLGFTSPWTS 204

Query: 61  PCLCKYSNPLTIS 73
           P   +Y++P+  S
Sbjct: 205 PAPWRYASPVARS 217

BLAST of Cmc01g0008131 vs. ExPASy TrEMBL
Match: A0A0P0V6Z2 (Os01g0699450 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0699450 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.2e-07
Identity = 37/68 (54.41%), Postives = 44/68 (64.71%), Query Frame = 0

Query: 6  PCFSPRATSGAMNIGVPPFTASASQTHLEHPKS-AIFNPSPAIKMFLALISQCTNPCLCK 65
          PC SPRATSGAMN GVPP   + S T L HPKS ++  PS  I  FLAL S CT+    +
Sbjct: 29 PCSSPRATSGAMNAGVPPIGPAESMT-LAHPKSVSLARPSLPITTFLALTSPCTSEFPWR 88

Query: 66 YSNPLTIS 73
          Y++PL  S
Sbjct: 89 YASPLATS 95

BLAST of Cmc01g0008131 vs. ExPASy TrEMBL
Match: A0A2T7DHZ3 (Uncharacterized protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_5G193000 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 9.2e-07
Identity = 36/70 (51.43%), Postives = 43/70 (61.43%), Query Frame = 0

Query: 6  PCFSPRATSGAMNIGVPPFTASA-SQTHLEHPKS-AIFNPSPAIKMFLALISQCTNPCLC 65
          PC SPRATSGAMN GVPP        T   HPKS ++  PSP I  FLAL S CT+    
Sbjct: 14 PCCSPRATSGAMNAGVPPIGRHCDGWTGRAHPKSVSLARPSPPITTFLALTSPCTSDRPW 73

Query: 66 KYSNPLTISR 74
          +Y++P  +SR
Sbjct: 74 RYASPRAMSR 83

BLAST of Cmc01g0008131 vs. ExPASy TrEMBL
Match: A0A2K2DED8 (Uncharacterized protein OS=Brachypodium distachyon OX=15368 GN=BRADI_2g47491v3 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.1e-05
Identity = 36/68 (52.94%), Postives = 40/68 (58.82%), Query Frame = 0

Query: 6   PCFSPRATSGAMNIGVPPFTASASQTHLEHPKSAIF-NPSPAIKMFLALISQCTNPCLCK 65
           PC SPRATSGAM  GVPP   S S T L HPKSA F  PS     FL L S  T+    +
Sbjct: 212 PCSSPRATSGAMKAGVPPMGRSES-TVLAHPKSASFARPSAPTTTFLPLRSPWTSDIPWR 271

Query: 66  YSNPLTIS 73
           Y++PL  S
Sbjct: 272 YASPLATS 278

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PNT72662.12.7e-0852.78LOW QUALITY PROTEIN: hypothetical protein BRADI_2g47501v3 [Brachypodium distachy... [more]
KQK05071.22.9e-0749.32hypothetical protein BRADI_2g17802v3 [Brachypodium distachyon][more]
KAB8083093.16.6e-0754.41hypothetical protein EE612_005193, partial [Oryza sativa] >BAS73879.1 Os01g06994... [more]
PUZ55198.11.9e-0651.43hypothetical protein GQ55_5G193000 [Panicum hallii var. hallii][more]
KAF2951824.13.6e-0561.82hypothetical protein DAI22_01g292300 [Oryza sativa Japonica Group][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2K2DEF51.3e-0852.78Uncharacterized protein OS=Brachypodium distachyon OX=15368 GN=BRADI_2g47501v3 P... [more]
A0A0Q3G0L41.4e-0749.32Uncharacterized protein OS=Brachypodium distachyon OX=15368 GN=BRADI_2g17802v3 P... [more]
A0A0P0V6Z23.2e-0754.41Os01g0699450 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os01... [more]
A0A2T7DHZ39.2e-0751.43Uncharacterized protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_5G19300... [more]
A0A2K2DED85.1e-0552.94Uncharacterized protein OS=Brachypodium distachyon OX=15368 GN=BRADI_2g47491v3 P... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc01g0008131.1Cmc01g0008131.1mRNA