Cmc01g0007041 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0007041
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	photosystem II repair protein PSB27-H1, chloroplastic
Location	CMiso1.1chr01: 2607426 .. 2607935 (-)
RNA-Seq Expression	Cmc01g0007041
Synteny	Cmc01g0007041

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCCCCAACACTCATAACCCCCTGTACTTCCAAATCTCAGAGCCCCTTCATACCTCTCAAACCCAAATCCACCATTTCCGCCGCCGTAACAACCCCCACCGTCCGCCGCCGCGATTTCCTTTCTTTGTCCGCATCTGTTCTAGCACCGTCGTTTGTTCTGTTCCCTCAATCTCCGGCACTGGCGGCTTCGGACGACGAGTACGTGAAGGATACCAATGAGGTGATTGGTAAGGTGAGAACGACGATCACAATGGACCGAAATGACCCGAATGTGGCAGCAGCGGTGGCGGATCTTCGAGAAAGTTCCAATTCTTGGGTGGCTAAGTATAGGAAGGAGAAAGCTCTATTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCATTGAATGCTGTGTCGGGGCATTATATTAGCTTTGGACCGACGGCGCCGATACCGGCAAAGAGGAAGGCAAGGATTTTGGAAGAGATGGACACTGCGGAGAAAGCTCTGTTAAGAGGGAGATGA

mRNA sequence

ATGGCCTCCCCAACACTCATAACCCCCTGTACTTCCAAATCTCAGAGCCCCTTCATACCTCTCAAACCCAAATCCACCATTTCCGCCGCCGTAACAACCCCCACCGTCCGCCGCCGCGATTTCCTTTCTTTGTCCGCATCTGTTCTAGCACCGTCGTTTGTTCTGTTCCCTCAATCTCCGGCACTGGCGGCTTCGGACGACGAGTACGTGAAGGATACCAATGAGGTGATTGGTAAGGTGAGAACGACGATCACAATGGACCGAAATGACCCGAATGTGGCAGCAGCGGTGGCGGATCTTCGAGAAAGTTCCAATTCTTGGGTGGCTAAGTATAGGAAGGAGAAAGCTCTATTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCATTGAATGCTGTGTCGGGGCATTATATTAGCTTTGGACCGACGGCGCCGATACCGGCAAAGAGGAAGGCAAGGATTTTGGAAGAGATGGACACTGCGGAGAAAGCTCTGTTAAGAGGGAGATGA

Coding sequence (CDS)

ATGGCCTCCCCAACACTCATAACCCCCTGTACTTCCAAATCTCAGAGCCCCTTCATACCTCTCAAACCCAAATCCACCATTTCCGCCGCCGTAACAACCCCCACCGTCCGCCGCCGCGATTTCCTTTCTTTGTCCGCATCTGTTCTAGCACCGTCGTTTGTTCTGTTCCCTCAATCTCCGGCACTGGCGGCTTCGGACGACGAGTACGTGAAGGATACCAATGAGGTGATTGGTAAGGTGAGAACGACGATCACAATGGACCGAAATGACCCGAATGTGGCAGCAGCGGTGGCGGATCTTCGAGAAAGTTCCAATTCTTGGGTGGCTAAGTATAGGAAGGAGAAAGCTCTATTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCATTGAATGCTGTGTCGGGGCATTATATTAGCTTTGGACCGACGGCGCCGATACCGGCAAAGAGGAAGGCAAGGATTTTGGAAGAGATGGACACTGCGGAGAAAGCTCTGTTAAGAGGGAGATGA

Protein sequence

MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

Homology

[Close]

BLAST of Cmc01g0007041 vs. NCBI nr
Match: XP_008455335.1 (PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Cucumis melo] >KAA0031585.1 photosystem II repair protein PSB27-H1 [Cucumis melo var. makuwa] >TYK07037.1 photosystem II repair protein PSB27-H1 [Cucumis melo var. makuwa])

HSP 1 Score: 321.6 bits (823), Expect = 4.0e-84
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSP 60
           MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSP
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSP 60

Query: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRKEKALLGR 120
           ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRKEKALLGR
Sbjct: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]

BLAST of Cmc01g0007041 vs. NCBI nr
Match: XP_004136817.1 (photosystem II repair protein PSB27-H1, chloroplastic [Cucumis sativus] >KGN43600.1 hypothetical protein Csa_020553 [Cucumis sativus])

HSP 1 Score: 316.6 bits (810), Expect = 1.3e-82
Identity = 166/169 (98.22%), Postives = 168/169 (99.41%), Query Frame = 0


Query: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSP 60
           MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRR+FLSL+ASVLAPSFVLFPQSP
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP 60

Query: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRKEKALLGR 120
           ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSN WVAKYRKEKALLGR
Sbjct: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]

BLAST of Cmc01g0007041 vs. NCBI nr
Match: XP_038887363.1 (photosystem II repair protein PSB27-H1, chloroplastic [Benincasa hispida])

HSP 1 Score: 301.6 bits (771), Expect = 4.3e-78
Identity = 158/169 (93.49%), Postives = 164/169 (97.04%), Query Frame = 0


Query: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSP 60
           MASPTLITPCTSKSQ+PFIPLKPKSTISAA T  TVRRRDFLSL+ASVLAPS+VLFPQSP
Sbjct: 1   MASPTLITPCTSKSQTPFIPLKPKSTISAAATATTVRRRDFLSLTASVLAPSWVLFPQSP 60

Query: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRKEKALLGR 120
           ALA+SDDEYVKDT+EVIGKVR TITMDRNDPNVAAAVA+LRESSN WVAKYRKEKALLGR
Sbjct: 61  ALASSDDEYVKDTSEVIGKVRMTITMDRNDPNVAAAVAELRESSNFWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]

BLAST of Cmc01g0007041 vs. NCBI nr
Match: XP_022952622.1 (photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata] >XP_022969270.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 275.8 bits (704), Expect = 2.5e-70
Identity = 149/172 (86.63%), Postives = 159/172 (92.44%), Query Frame = 0


Query: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPT---VRRRDFLSLSASVLAPSFVLFP 60
           MASPTLITP TSKSQ   IPLKPKS+ISAA TT T    RRR+FLSL+ASVLAPS+VLFP
Sbjct: 1   MASPTLITPSTSKSQPLIIPLKPKSSISAAATTTTHHYSRRREFLSLTASVLAPSWVLFP 60

Query: 61  QSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRKEKAL 120
            +PALA+SD+EYVKDT EVIGKVRTTITMD+NDPNVAAAVA+LRESSNSWVAKYRKEK+L
Sbjct: 61  PAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKSL 120

Query: 121 LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Sbjct: 121 LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 172

[Close]

BLAST of Cmc01g0007041 vs. NCBI nr
Match: KAG6572353.1 (Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011964.1 Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 275.0 bits (702), Expect = 4.3e-70
Identity = 148/173 (85.55%), Postives = 159/173 (91.91%), Query Frame = 0


Query: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTV----RRRDFLSLSASVLAPSFVLF 60
           MASPTLITP TSKSQ   IPLKPKS+I+AA TT T     RRR+FLSL+ASVLAPS+VLF
Sbjct: 1   MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLF 60

Query: 61  PQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRKEKA 120
           P +PALA+SD+EYVKDT EVIGKVRTTITMD+NDPNVAAAVA+LRESSNSWVAKYRKEK+
Sbjct: 61  PPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKS 120

Query: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Sbjct: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 173

[Close]

BLAST of Cmc01g0007041 vs. ExPASy Swiss-Prot
Match: Q9LR64 (Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-1 PE=1 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 3.1e-47
Identity = 106/174 (60.92%), Postives = 129/174 (74.14%), Query Frame = 0


Query: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPT---VRRRDFLSLSA--SVLAPSFVL 60
           MAS +        +  P  P    S++S  +  P    + RRDFLSL+A  ++L  S   
Sbjct: 1   MASASATATLLKPNLPPHKPTIIASSVSPPLPPPRRNHLLRRDFLSLAATSTLLTQSIQF 60

Query: 61  FPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRKEK 120
              +P  AA D+EY+KDT+ VI KVR+T++M + DPNVA AVA+LRE+SNSWVAKYRKEK
Sbjct: 61  LAPAPVSAAEDEEYIKDTSAVISKVRSTLSMQKTDPNVADAVAELREASNSWVAKYRKEK 120

Query: 121 ALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ALLG+ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Sbjct: 121 ALLGKASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALTRGR 174

[Close]

BLAST of Cmc01g0007041 vs. ExPASy Swiss-Prot
Match: Q9ZVZ9 (Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-2 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.2e-05
Identity = 27/98 (27.55%), Postives = 55/98 (56.12%), Query Frame = 0


Query: 69  YVKDTNEVIGKVRTTITMDRNDPNVAAAVAD-LRESSNSWVAKYRKEKALLGRASFRDMY 128
           Y+K   EV+  +R ++  +  D       AD  +ES   +++ +R +K + G  S+ ++ 
Sbjct: 102 YLKSAREVVKTMRESLKENPKDNAKFRRSADAAKESIRDYLSNWRGQKTVAGEESYVELE 161

Query: 129 SALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKAL 166
           + + A++  Y   GP+AP+P + K  IL++++ AE+ L
Sbjct: 162 NVIRALAKFYSKAGPSAPLPDEVKTEILDDLNKAEEFL 199

[Close]

BLAST of Cmc01g0007041 vs. ExPASy TrEMBL
Match: A0A5A7SR30 (Photosystem II repair protein PSB27-H1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003550 PE=3 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 1.9e-84
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSP 60
           MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSP
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSP 60

Query: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRKEKALLGR 120
           ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRKEKALLGR
Sbjct: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]

BLAST of Cmc01g0007041 vs. ExPASy TrEMBL
Match: A0A1S3C1X2 (photosystem II repair protein PSB27-H1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495525 PE=3 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 1.9e-84
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSP 60
           MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSP
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSP 60

Query: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRKEKALLGR 120
           ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRKEKALLGR
Sbjct: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]

BLAST of Cmc01g0007041 vs. ExPASy TrEMBL
Match: A0A0A0K1S2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047350 PE=3 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 6.2e-83
Identity = 166/169 (98.22%), Postives = 168/169 (99.41%), Query Frame = 0


Query: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSP 60
           MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRR+FLSL+ASVLAPSFVLFPQSP
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP 60

Query: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRKEKALLGR 120
           ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSN WVAKYRKEKALLGR
Sbjct: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]

BLAST of Cmc01g0007041 vs. ExPASy TrEMBL
Match: A0A6J1HZH1 (photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111468326 PE=3 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.2e-70
Identity = 149/172 (86.63%), Postives = 159/172 (92.44%), Query Frame = 0


Query: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPT---VRRRDFLSLSASVLAPSFVLFP 60
           MASPTLITP TSKSQ   IPLKPKS+ISAA TT T    RRR+FLSL+ASVLAPS+VLFP
Sbjct: 1   MASPTLITPSTSKSQPLIIPLKPKSSISAAATTTTHHYSRRREFLSLTASVLAPSWVLFP 60

Query: 61  QSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRKEKAL 120
            +PALA+SD+EYVKDT EVIGKVRTTITMD+NDPNVAAAVA+LRESSNSWVAKYRKEK+L
Sbjct: 61  PAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKSL 120

Query: 121 LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Sbjct: 121 LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 172

[Close]

BLAST of Cmc01g0007041 vs. ExPASy TrEMBL
Match: A0A6J1GKW7 (photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111455256 PE=3 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.2e-70
Identity = 149/172 (86.63%), Postives = 159/172 (92.44%), Query Frame = 0


Query: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPT---VRRRDFLSLSASVLAPSFVLFP 60
           MASPTLITP TSKSQ   IPLKPKS+ISAA TT T    RRR+FLSL+ASVLAPS+VLFP
Sbjct: 1   MASPTLITPSTSKSQPLIIPLKPKSSISAAATTTTHHYSRRREFLSLTASVLAPSWVLFP 60

Query: 61  QSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRKEKAL 120
            +PALA+SD+EYVKDT EVIGKVRTTITMD+NDPNVAAAVA+LRESSNSWVAKYRKEK+L
Sbjct: 61  PAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKSL 120

Query: 121 LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Sbjct: 121 LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 172

[Close]

BLAST of Cmc01g0007041 vs. TAIR 10
Match: AT1G03600.1 (photosystem II family protein )

HSP 1 Score: 189.5 bits (480), Expect = 2.2e-48
Identity = 106/174 (60.92%), Postives = 129/174 (74.14%), Query Frame = 0


Query: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPT---VRRRDFLSLSA--SVLAPSFVL 60
           MAS +        +  P  P    S++S  +  P    + RRDFLSL+A  ++L  S   
Sbjct: 1   MASASATATLLKPNLPPHKPTIIASSVSPPLPPPRRNHLLRRDFLSLAATSTLLTQSIQF 60

Query: 61  FPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRKEK 120
              +P  AA D+EY+KDT+ VI KVR+T++M + DPNVA AVA+LRE+SNSWVAKYRKEK
Sbjct: 61  LAPAPVSAAEDEEYIKDTSAVISKVRSTLSMQKTDPNVADAVAELREASNSWVAKYRKEK 120

Query: 121 ALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ALLG+ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Sbjct: 121 ALLGKASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALTRGR 174

[Close]

BLAST of Cmc01g0007041 vs. TAIR 10
Match: AT1G05385.1 (photosystem II 11 kDa protein-related )

HSP 1 Score: 50.4 bits (119), Expect = 1.6e-06
Identity = 27/98 (27.55%), Postives = 55/98 (56.12%), Query Frame = 0


Query: 69  YVKDTNEVIGKVRTTITMDRNDPNVAAAVAD-LRESSNSWVAKYRKEKALLGRASFRDMY 128
           Y+K   EV+  +R ++  +  D       AD  +ES   +++ +R +K + G  S+ ++ 
Sbjct: 102 YLKSAREVVKTMRESLKENPKDNAKFRRSADAAKESIRDYLSNWRGQKTVAGEESYVELE 161

Query: 129 SALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKAL 166
           + + A++  Y   GP+AP+P + K  IL++++ AE+ L
Sbjct: 162 NVIRALAKFYSKAGPSAPLPDEVKTEILDDLNKAEEFL 199

The following BLAST results are available for this feature:

BLAST of Cmc01g0007041 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455335.1	4.0e-84	100.00	PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Cucumis melo] ...	[more]
XP_004136817.1	1.3e-82	98.22	photosystem II repair protein PSB27-H1, chloroplastic [Cucumis sativus] >KGN4360...	[more]
XP_038887363.1	4.3e-78	93.49	photosystem II repair protein PSB27-H1, chloroplastic [Benincasa hispida]	[more]
XP_022952622.1	2.5e-70	86.63	photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata] ...	[more]
KAG6572353.1	4.3e-70	85.55	Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyro...	[more]

BLAST of Cmc01g0007041 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LR64	3.1e-47	60.92	Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q9ZVZ9	2.2e-05	27.55	Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabid...	[more]

BLAST of Cmc01g0007041 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SR30	1.9e-84	100.00	Photosystem II repair protein PSB27-H1 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3C1X2	1.9e-84	100.00	photosystem II repair protein PSB27-H1, chloroplastic OS=Cucumis melo OX=3656 GN...	[more]
A0A0A0K1S2	6.2e-83	98.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047350 PE=3 SV=1	[more]
A0A6J1HZH1	1.2e-70	86.63	photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita maxima O...	[more]
A0A6J1GKW7	1.2e-70	86.63	photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita moschata...	[more]

BLAST of Cmc01g0007041 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03600.1	2.2e-48	60.92	photosystem II family protein	[more]
AT1G05385.1	1.6e-06	27.55	photosystem II 11 kDa protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038450	Photosystem II Pbs27 superfamily	GENE3D	1.20.58.810	Photosystem II Pbs27	coord: 64..169 e-value: 5.4E-40 score: 138.1
IPR025585	Photosystem II Pbs27	PFAM	PF13326	PSII_Pbs27	coord: 64..165 e-value: 4.6E-32 score: 111.2
IPR025585	Photosystem II Pbs27	PANTHER	PTHR34041	PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTIC	coord: 1..169
IPR025585	Photosystem II Pbs27	HAMAP	MF_01481	PSII_Psb27	coord: 43..165 score: 23.534649
None	No IPR available	PANTHER	PTHR34041:SF1	PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTIC	coord: 1..169

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0007041.1	Cmc01g0007041.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0010206	photosystem II repair
cellular_component	GO:0009543	chloroplast thylakoid lumen
cellular_component	GO:0009523	photosystem II