Cmc01g0006541 (gene) Melon (Charmono) v1.1

Overview
NameCmc01g0006541
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionPentatricopeptide repeat-containing protein
LocationCMiso1.1chr01: 2337874 .. 2340307 (+)
RNA-Seq ExpressionCmc01g0006541
SyntenyCmc01g0006541
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTATCTATCAGCAAGTCAACTACAGATTTTAACAAATAGAATGAATGAGATCAAATAAAACGATAACAAAACTCTCTTATCGTTTCTTGAAAAATGAAAAACAGAAACCGTGATTTTCGTTTTTAGTATTACCATTACCATTACCATAACCACAAGCCACCATAGACAAAAGGCGATATATGGGCAAGCCCAGTGGCAGTTTCAATGCCTTCTTGAACCCCTTTTATTCATTTACTGTGCGATCGCTCTCCATGAAGATTTCTTCTTCTGCTTCTTTACAAGAATTTACCAGCCTCTGCAATGACGGACGCATAAGACAAGCCTATGACACGTTCAAAGTCGAGATATGGTCAGACCCATCTCTGTTTTCTCATCTTCTTCAATCATGCATAAAACTAGGCTCGCTTTTTGGAGGAAAACAGGTCCATTCTTTGATAATTACATCTGGGGGTTCCAAAGACAAGTTCATTTCGAATCACCTTTTAAACTTGTACTCCAAATTAGGACAGTTTAAGTCTTCTTTGGTGCTGTTTAGTAACATGCCACGAAGAAATTTAATGTCGTTTAACATTTTGATCAATGGGTATTTGCAGCTTGGGGACTTGGAAAACGCCCAGAAGTTGTTTGATGAAATGTCTGAAAGAAACATTGCCACATGGAATGCAATGATAGCAGGTCTGACCCAGTTTGAATTTAACAAACAAGCTTTAAGTTTGTTTAAAGAAATGTATGGATTGGGTTTTTTGCCTGATGAGTTTACACTAGGCAGTGTACTCAGAGGTTGCGCTGGTTTAAGATCTTTACTTGCAGGTCAAGAGGTTCATGCTTGTCTCTTGAAATGTGGATTTGAACTGAGTTCGGTAGTGGGCAGCTCTCTAGCTCATATGTATATAAAGTCTGGTAGTTTATCTGATGGAGAGAAGTTAATTAAATCAATGCCAATTCGTACTGTAGTTGCTTGGAATACTCTTATTGCTGGAAAAGCGCAAAATGGGTGTCCAGAAGAAGTGTTGAACCAGTATAATATGATGAAAATGGCAGGCTTTCGACCGGATAAAATAACATTTGTGAGTGTATTAAGTGCATGTTCGGAACTGGCGACGTTAGGCCAAGGCCAGCAAATCCATGCTGAAGTGATCAAAGCTGGAGCTAGTTCAGTTTTAGCGGTTATCAGTTCATTGATTAGCATGTATTCACGATCTGGGTGTCTAGAGGACTCTATAAAAGCCTTTGTGGATCGTGAAGATTTTGATGTCGTGTTATGGAGTTCTATGATTGCCGCTTATGGATTCCATGGGAGAGGAGAGGAAGCTGTGGAGCTGTTTCACCAAATGGAAGATTTGAAAATGGAGGCAAATGAAGTGACCTTCTTGAGTCTGCTTTATGCTTGTAGTCACTCTGGATTGAAGGAGAAAGGAACTGAGTATTTAGATTTGATGGTGAAGAAGTATAAACTCAAGCCTAGAATTGAACACTACACATGTGTGGTTGATCTGCTCGGTCGGGCTGGCCGGTTGGAGGAAGCAGAGGGTATGATAAGATCAATGCCTGTAAAACCAGATGGCATTATTTGGAAAACTTTATTAGCAGCCTGCAAACTCCACAAGGAAGCAGAAATGGCCAAACGAATTTCTGAAGAAATTATAAAGCTTGATCCTCTAGATGCTGCTTCCTATGTGCTGCTTTCAAACATCCATGCTTCTGCTAGAAATTGGCCCAACGTTTCCGAGATTAGGAAAGCAATGAGAGACAGGAACGTCAGGAAGGAACCAGGCATTAGTTGGTTAGAACTCAAAAATTTGGTTCATCAATTTAGCATGGGGGACAAATCTCACCCACAATACTTTGAGATTGATTTGTATTTGAAAGAACTAATGTCCGAACTGAAACGGCATGGTTACGTGCCGGACTTAGGCTCGGTTTTGCACGACATGGACAATGAAGAAAAAGAATACAACTTGGCACATCACAGTGAGAAGTTTGCAATTGCTTTTGCACTGATGAATACTTCAGAGAATGTCCCAATAAGAGTGATGAAGAACTTGAGAGTCTGCAATGACTGTCATAATGCCATTAAGTGCATATCAAGGATTAGGAATAGAGAGATTATTGTAAGAGATGCAAGTAGATTTCACCATTTCAAGGATGGTGAATGTTCTTGTGGTAATTATTGGTAGGAATTTTTCTTTTTCTTTCGCACAAATAGGGATATGAGAATTTGAATCTCTAACATTATAAGACACATTGCAAGTCGACTACCCTAAGCTATATTCCGTCGACTACCCTAAGCTATGTTCGTTTACGGTCTCTTTCCATATGTAAACCTAAGGTTCGATCTAATTAATAAGCATTCATTTATATAATGTTTCAAACAAGCCTGAGCTTGATCATGCTCGTTGGGATAGGAACAATACAAGTAAAGACTCAACAAA

mRNA sequence

GTTTATCTATCAGCAAGTCAACTACAGATTTTAACAAATAGAATGAATGAGATCAAATAAAACGATAACAAAACTCTCTTATCGTTTCTTGAAAAATGAAAAACAGAAACCGTGATTTTCGTTTTTAGTATTACCATTACCATTACCATAACCACAAGCCACCATAGACAAAAGGCGATATATGGGCAAGCCCAGTGGCAGTTTCAATGCCTTCTTGAACCCCTTTTATTCATTTACTGTGCGATCGCTCTCCATGAAGATTTCTTCTTCTGCTTCTTTACAAGAATTTACCAGCCTCTGCAATGACGGACGCATAAGACAAGCCTATGACACGTTCAAACTTGGGGACTTGGAAAACGCCCAGAAGTTGTTTGATGAAATGTCTGAAAGAAACATTGCCACATGGAATGCAATGATAGCAGGTCTGACCCAGTTTGAATTTAACAAACAAGCTTTAAGTTTGTTTAAAGAAATGTATGGATTGGGTTTTTTGCCTGATGAGTTTACACTAGGCAGTGTACTCAGAGGTTGCGCTGGTTTAAGATCTTTACTTGCAGGTCAAGAGGTTCATGCTTGTCTCTTGAAATGTGGATTTGAACTGAGTTCGGTAGTGGGCAGCTCTCTAGCTCATATGTATATAAAGTCTGGTAGTTTATCTGATGGAGAGAAGTTAATTAAATCAATGCCAATTCGTACTGTAGTTGCTTGGAATACTCTTATTGCTGGAAAAGCGCAAAATGGGTGTCCAGAAGAAGTGTTGAACCAGTATAATATGATGAAAATGGCAGGCTTTCGACCGGATAAAATAACATTTGTGAGTGTATTAAGTGCATGTTCGGAACTGGCGACGTTAGGCCAAGGCCAGCAAATCCATGCTGAAGTGATCAAAGCTGGAGCTAGTTCAGTTTTAGCGGTTATCAGTTCATTGATTAGCATGTATTCACGATCTGGGTGTCTAGAGGACTCTATAAAAGCCTTTGTGGATCGTGAAGATTTTGATGTCGTGTTATGGAGTTCTATGATTGCCGCTTATGGATTCCATGGGAGAGGAGAGGAAGCTGTGGAGCTGTTTCACCAAATGGAAGATTTGAAAATGGAGGCAAATGAAGTGACCTTCTTGAGTCTGCTTTATGCTTGTAGTCACTCTGGATTGAAGGAGAAAGGAACTGAGTATTTAGATTTGATGGTGAAGAAGTATAAACTCAAGCCTAGAATTGAACACTACACATGTGTGGTTGATCTGCTCGGTCGGGCTGGCCGGTTGGAGGAAGCAGAGGGTATGATAAGATCAATGCCTGTAAAACCAGATGGCATTATTTGGAAAACTTTATTAGCAGCCTGCAAACTCCACAAGGAAGCAGAAATGGCCAAACGAATTTCTGAAGAAATTATAAAGCTTGATCCTCTAGATGCTGCTTCCTATGTGCTGCTTTCAAACATCCATGCTTCTGCTAGAAATTGGCCCAACGTTTCCGAGATTAGGAAAGCAATGAGAGACAGGAACGTCAGGAAGGAACCAGGCATTAGTTGGTTAGAACTCAAAAATTTGGTTCATCAATTTAGCATGGGGGACAAATCTCACCCACAATACTTTGAGATTGATTTGTATTTGAAAGAACTAATGTCCGAACTGAAACGGCATGGTTACGTGCCGGACTTAGGCTCGGTTTTGCACGACATGGACAATGAAGAAAAAGAATACAACTTGGCACATCACAGTGAGAAGTTTGCAATTGCTTTTGCACTGATGAATACTTCAGAGAATGTCCCAATAAGAGTGATGAAGAACTTGAGAGTCTGCAATGACTGTCATAATGCCATTAAGTGCATATCAAGGATTAGGAATAGAGAGATTATTGTAAGAGATGCAAGTAGATTTCACCATTTCAAGGATGGTGAATGTTCTTGTGGTAATTATTGGTAGGAATTTTTCTTTTTCTTTCGCACAAATAGGGATATGAGAATTTGAATCTCTAACATTATAAGACACATTGCAAGTCGACTACCCTAAGCTATATTCCGTCGACTACCCTAAGCTATGTTCGTTTACGGTCTCTTTCCATATGTAAACCTAAGGTTCGATCTAATTAATAAGCATTCATTTATATAATGTTTCAAACAAGCCTGAGCTTGATCATGCTCGTTGGGATAGGAACAATACAAGTAAAGACTCAACAAA

Coding sequence (CDS)

ATGGGCAAGCCCAGTGGCAGTTTCAATGCCTTCTTGAACCCCTTTTATTCATTTACTGTGCGATCGCTCTCCATGAAGATTTCTTCTTCTGCTTCTTTACAAGAATTTACCAGCCTCTGCAATGACGGACGCATAAGACAAGCCTATGACACGTTCAAACTTGGGGACTTGGAAAACGCCCAGAAGTTGTTTGATGAAATGTCTGAAAGAAACATTGCCACATGGAATGCAATGATAGCAGGTCTGACCCAGTTTGAATTTAACAAACAAGCTTTAAGTTTGTTTAAAGAAATGTATGGATTGGGTTTTTTGCCTGATGAGTTTACACTAGGCAGTGTACTCAGAGGTTGCGCTGGTTTAAGATCTTTACTTGCAGGTCAAGAGGTTCATGCTTGTCTCTTGAAATGTGGATTTGAACTGAGTTCGGTAGTGGGCAGCTCTCTAGCTCATATGTATATAAAGTCTGGTAGTTTATCTGATGGAGAGAAGTTAATTAAATCAATGCCAATTCGTACTGTAGTTGCTTGGAATACTCTTATTGCTGGAAAAGCGCAAAATGGGTGTCCAGAAGAAGTGTTGAACCAGTATAATATGATGAAAATGGCAGGCTTTCGACCGGATAAAATAACATTTGTGAGTGTATTAAGTGCATGTTCGGAACTGGCGACGTTAGGCCAAGGCCAGCAAATCCATGCTGAAGTGATCAAAGCTGGAGCTAGTTCAGTTTTAGCGGTTATCAGTTCATTGATTAGCATGTATTCACGATCTGGGTGTCTAGAGGACTCTATAAAAGCCTTTGTGGATCGTGAAGATTTTGATGTCGTGTTATGGAGTTCTATGATTGCCGCTTATGGATTCCATGGGAGAGGAGAGGAAGCTGTGGAGCTGTTTCACCAAATGGAAGATTTGAAAATGGAGGCAAATGAAGTGACCTTCTTGAGTCTGCTTTATGCTTGTAGTCACTCTGGATTGAAGGAGAAAGGAACTGAGTATTTAGATTTGATGGTGAAGAAGTATAAACTCAAGCCTAGAATTGAACACTACACATGTGTGGTTGATCTGCTCGGTCGGGCTGGCCGGTTGGAGGAAGCAGAGGGTATGATAAGATCAATGCCTGTAAAACCAGATGGCATTATTTGGAAAACTTTATTAGCAGCCTGCAAACTCCACAAGGAAGCAGAAATGGCCAAACGAATTTCTGAAGAAATTATAAAGCTTGATCCTCTAGATGCTGCTTCCTATGTGCTGCTTTCAAACATCCATGCTTCTGCTAGAAATTGGCCCAACGTTTCCGAGATTAGGAAAGCAATGAGAGACAGGAACGTCAGGAAGGAACCAGGCATTAGTTGGTTAGAACTCAAAAATTTGGTTCATCAATTTAGCATGGGGGACAAATCTCACCCACAATACTTTGAGATTGATTTGTATTTGAAAGAACTAATGTCCGAACTGAAACGGCATGGTTACGTGCCGGACTTAGGCTCGGTTTTGCACGACATGGACAATGAAGAAAAAGAATACAACTTGGCACATCACAGTGAGAAGTTTGCAATTGCTTTTGCACTGATGAATACTTCAGAGAATGTCCCAATAAGAGTGATGAAGAACTTGAGAGTCTGCAATGACTGTCATAATGCCATTAAGTGCATATCAAGGATTAGGAATAGAGAGATTATTGTAAGAGATGCAAGTAGATTTCACCATTTCAAGGATGGTGAATGTTCTTGTGGTAATTATTGGTAG

Protein sequence

MGKPSGSFNAFLNPFYSFTVRSLSMKISSSASLQEFTSLCNDGRIRQAYDTFKLGDLENAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEVIKAGASSVLAVISSLISMYSRSGCLEDSIKAFVDREDFDVVLWSSMIAAYGFHGRGEEAVELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYLDLMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVKPDGIIWKTLLAACKLHKEAEMAKRISEEIIKLDPLDAASYVLLSNIHASARNWPNVSEIRKAMRDRNVRKEPGISWLELKNLVHQFSMGDKSHPQYFEIDLYLKELMSELKRHGYVPDLGSVLHDMDNEEKEYNLAHHSEKFAIAFALMNTSENVPIRVMKNLRVCNDCHNAIKCISRIRNREIIVRDASRFHHFKDGECSCGNYW
Homology
[Close]
BLAST of Cmc01g0006541 vs. NCBI nr
Match: XP_016901687.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g41080 isoform X2 [Cucumis melo])

HSP 1 Score: 1148.3 bits (2969), Expect = 0.0e+00
Identity = 580/608 (95.39%), Postives = 580/608 (95.39%), Query Frame = 0 

Query: 1   MGKPSGSFNAFLNPFYSFTVRSLSMKISSSASLQEFTSLCNDGRIRQAYDTFK------- 60
           MGKPSGSFNAFLNPFYSFTVRSLSMKISSSASLQEFTSLCNDGRIRQAYDTFK       
Sbjct: 1   MGKPSGSFNAFLNPFYSFTVRSLSMKISSSASLQEFTSLCNDGRIRQAYDTFKVEIWSDP 60

Query: 61  ---------------------LGDLENAQKLFDEMSERNIATWNAMIAGLTQFEFNKQAL 120
                                LGDLENAQKLFDEMSERNIATWNAMIAGLTQFEFNKQAL
Sbjct: 61  SLFSHLLQSCIKLGSLFGGKQLGDLENAQKLFDEMSERNIATWNAMIAGLTQFEFNKQAL 120

Query: 121 SLFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMY 180
           SLFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMY
Sbjct: 121 SLFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMY 180

Query: 181 IKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFV 240
           IKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFV
Sbjct: 181 IKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFV 240

Query: 241 SVLSACSELATLGQGQQIHAEVIKAGASSVLAVISSLISMYSRSGCLEDSIKAFVDREDF 300
           SVLSACSELATLGQGQQIHAEVIKAGASSVLAVISSLISMYSRSGCLEDSIKAFVDREDF
Sbjct: 241 SVLSACSELATLGQGQQIHAEVIKAGASSVLAVISSLISMYSRSGCLEDSIKAFVDREDF 300

Query: 301 DVVLWSSMIAAYGFHGRGEEAVELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYL 360
           DVVLWSSMIAAYGFHGRGEEAVELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYL
Sbjct: 301 DVVLWSSMIAAYGFHGRGEEAVELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYL 360

Query: 361 DLMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVKPDGIIWKTLLAACKLHKE 420
           DLMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVKPDGIIWKTLLAACKLHKE
Sbjct: 361 DLMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVKPDGIIWKTLLAACKLHKE 420

Query: 421 AEMAKRISEEIIKLDPLDAASYVLLSNIHASARNWPNVSEIRKAMRDRNVRKEPGISWLE 480
           AEMAKRISEEIIKLDPLDAASYVLLSNIHASARNWPNVSEIRKAMRDRNVRKEPGISWLE
Sbjct: 421 AEMAKRISEEIIKLDPLDAASYVLLSNIHASARNWPNVSEIRKAMRDRNVRKEPGISWLE 480

Query: 481 LKNLVHQFSMGDKSHPQYFEIDLYLKELMSELKRHGYVPDLGSVLHDMDNEEKEYNLAHH 540
           LKNLVHQFSMGDKSHPQYFEIDLYLKELMSELKRHGYVPDLGSVLHDMDNEEKEYNLAHH
Sbjct: 481 LKNLVHQFSMGDKSHPQYFEIDLYLKELMSELKRHGYVPDLGSVLHDMDNEEKEYNLAHH 540

Query: 541 SEKFAIAFALMNTSENVPIRVMKNLRVCNDCHNAIKCISRIRNREIIVRDASRFHHFKDG 581
           SEKFAIAFALMNTSENVPIRVMKNLRVCNDCHNAIKCISRIRNREIIVRDASRFHHFKDG
Sbjct: 541 SEKFAIAFALMNTSENVPIRVMKNLRVCNDCHNAIKCISRIRNREIIVRDASRFHHFKDG 600

[Close]
BLAST of Cmc01g0006541 vs. NCBI nr
Match: XP_008455289.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g41080 isoform X1 [Cucumis melo])

HSP 1 Score: 1126.3 bits (2912), Expect = 0.0e+00
Identity = 580/665 (87.22%), Postives = 580/665 (87.22%), Query Frame = 0 

Query: 1   MGKPSGSFNAFLNPFYSFTVRSLSMKISSSASLQEFTSLCNDGRIRQAYDTFK------- 60
           MGKPSGSFNAFLNPFYSFTVRSLSMKISSSASLQEFTSLCNDGRIRQAYDTFK       
Sbjct: 1   MGKPSGSFNAFLNPFYSFTVRSLSMKISSSASLQEFTSLCNDGRIRQAYDTFKVEIWSDP 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  SLFSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNLYSKLGQFKSSLVLFSN 120

Query: 121 ------------------LGDLENAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLF 180
                             LGDLENAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLF
Sbjct: 121 MPRRNLMSFNILINGYLQLGDLENAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLF 180

Query: 181 KEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKS 240
           KEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKS
Sbjct: 181 KEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKS 240

Query: 241 GSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVL 300
           GSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVL
Sbjct: 241 GSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVL 300

Query: 301 SACSELATLGQGQQIHAEVIKAGASSVLAVISSLISMYSRSGCLEDSIKAFVDREDFDVV 360
           SACSELATLGQGQQIHAEVIKAGASSVLAVISSLISMYSRSGCLEDSIKAFVDREDFDVV
Sbjct: 301 SACSELATLGQGQQIHAEVIKAGASSVLAVISSLISMYSRSGCLEDSIKAFVDREDFDVV 360

Query: 361 LWSSMIAAYGFHGRGEEAVELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYLDLM 420
           LWSSMIAAYGFHGRGEEAVELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYLDLM
Sbjct: 361 LWSSMIAAYGFHGRGEEAVELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYLDLM 420

Query: 421 VKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVKPDGIIWKTLLAACKLHKEAEM 480
           VKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVKPDGIIWKTLLAACKLHKEAEM
Sbjct: 421 VKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVKPDGIIWKTLLAACKLHKEAEM 480

Query: 481 AKRISEEIIKLDPLDAASYVLLSNIHASARNWPNVSEIRKAMRDRNVRKEPGISWLELKN 540
           AKRISEEIIKLDPLDAASYVLLSNIHASARNWPNVSEIRKAMRDRNVRKEPGISWLELKN
Sbjct: 481 AKRISEEIIKLDPLDAASYVLLSNIHASARNWPNVSEIRKAMRDRNVRKEPGISWLELKN 540

Query: 541 LVHQFSMGDKSHPQYFEIDLYLKELMSELKRHGYVPDLGSVLHDMDNEEKEYNLAHHSEK 581
           LVHQFSMGDKSHPQYFEIDLYLKELMSELKRHGYVPDLGSVLHDMDNEEKEYNLAHHSEK
Sbjct: 541 LVHQFSMGDKSHPQYFEIDLYLKELMSELKRHGYVPDLGSVLHDMDNEEKEYNLAHHSEK 600

[Close]
BLAST of Cmc01g0006541 vs. NCBI nr
Match: XP_031744315.1 (pentatricopeptide repeat-containing protein At2g41080 isoform X2 [Cucumis sativus])

HSP 1 Score: 1114.0 bits (2880), Expect = 0.0e+00
Identity = 561/606 (92.57%), Postives = 574/606 (94.72%), Query Frame = 0 

Query: 3   KPSGSFNAFLNPFYSFTVRSLSMKISSSASLQEFTSLCNDGRIRQAYDTF---------- 62
           KPS SFNAFLNP YSFTVRSLSMKISSSASLQEFTSLCNDGRI+QAYDTF          
Sbjct: 5   KPSRSFNAFLNPLYSFTVRSLSMKISSSASLQEFTSLCNDGRIKQAYDTFTSEIWSDPSL 64

Query: 63  ------------------KLGDLENAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSL 122
                             +LGDLE+AQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSL
Sbjct: 65  FSHLLQSCIKLGSLFGGKQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSL 124

Query: 123 FKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIK 182
           FKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIK
Sbjct: 125 FKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIK 184

Query: 183 SGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSV 242
           SGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSV
Sbjct: 185 SGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSV 244

Query: 243 LSACSELATLGQGQQIHAEVIKAGASSVLAVISSLISMYSRSGCLEDSIKAFVDREDFDV 302
           LSACSELATLGQGQQIHAEVIKAGASSVLAV+SSLISMYSRSGCLEDSIKAFVDRE+FDV
Sbjct: 245 LSACSELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFDV 304

Query: 303 VLWSSMIAAYGFHGRGEEAVELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYLDL 362
           VLWSSMIAAYGFHGRGEEA+ELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEY DL
Sbjct: 305 VLWSSMIAAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDL 364

Query: 363 MVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVKPDGIIWKTLLAACKLHKEAE 422
           MVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPV+PDGIIWKTLLAACKLHKEAE
Sbjct: 365 MVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAACKLHKEAE 424

Query: 423 MAKRISEEIIKLDPLDAASYVLLSNIHASARNWPNVSEIRKAMRDRNVRKEPGISWLELK 482
           MA+RISEEIIKLDPLDAASYVLLSNIHASARNW NVS+IRKAMRDR+VRKEPGISWLELK
Sbjct: 425 MAERISEEIIKLDPLDAASYVLLSNIHASARNWLNVSQIRKAMRDRSVRKEPGISWLELK 484

Query: 483 NLVHQFSMGDKSHPQYFEIDLYLKELMSELKRHGYVPDLGSVLHDMDNEEKEYNLAHHSE 542
           NLVHQFSMGDKSHPQYFEIDLYLKELMSELK+HGYVP+LGSVLHDMDNEEKEYNLAHHSE
Sbjct: 485 NLVHQFSMGDKSHPQYFEIDLYLKELMSELKQHGYVPELGSVLHDMDNEEKEYNLAHHSE 544

Query: 543 KFAIAFALMNTSENVPIRVMKNLRVCNDCHNAIKCISRIRNREIIVRDASRFHHFKDGEC 581
           KFAIAFALMNTSENVPIRVMKNLRVC+DCHNAIKCISRIRNREIIVRDASRFHHFKDGEC
Sbjct: 545 KFAIAFALMNTSENVPIRVMKNLRVCDDCHNAIKCISRIRNREIIVRDASRFHHFKDGEC 604

[Close]
BLAST of Cmc01g0006541 vs. NCBI nr
Match: XP_004137032.1 (pentatricopeptide repeat-containing protein At2g41080 isoform X1 [Cucumis sativus])

HSP 1 Score: 1092.0 bits (2823), Expect = 0.0e+00
Identity = 561/663 (84.62%), Postives = 574/663 (86.58%), Query Frame = 0 

Query: 3   KPSGSFNAFLNPFYSFTVRSLSMKISSSASLQEFTSLCNDGRIRQAYDTF---------- 62
           KPS SFNAFLNP YSFTVRSLSMKISSSASLQEFTSLCNDGRI+QAYDTF          
Sbjct: 5   KPSRSFNAFLNPLYSFTVRSLSMKISSSASLQEFTSLCNDGRIKQAYDTFTSEIWSDPSL 64

Query: 63  ------------------------------------------------------------ 122
                                                                       
Sbjct: 65  FSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLVLFSNMP 124

Query: 123 ---------------KLGDLENAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKE 182
                          +LGDLE+AQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKE
Sbjct: 125 RRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKE 184

Query: 183 MYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGS 242
           MYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGS
Sbjct: 185 MYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGS 244

Query: 243 LSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSA 302
           LSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSA
Sbjct: 245 LSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSA 304

Query: 303 CSELATLGQGQQIHAEVIKAGASSVLAVISSLISMYSRSGCLEDSIKAFVDREDFDVVLW 362
           CSELATLGQGQQIHAEVIKAGASSVLAV+SSLISMYSRSGCLEDSIKAFVDRE+FDVVLW
Sbjct: 305 CSELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFDVVLW 364

Query: 363 SSMIAAYGFHGRGEEAVELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYLDLMVK 422
           SSMIAAYGFHGRGEEA+ELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEY DLMVK
Sbjct: 365 SSMIAAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDLMVK 424

Query: 423 KYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVKPDGIIWKTLLAACKLHKEAEMAK 482
           KYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPV+PDGIIWKTLLAACKLHKEAEMA+
Sbjct: 425 KYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAACKLHKEAEMAE 484

Query: 483 RISEEIIKLDPLDAASYVLLSNIHASARNWPNVSEIRKAMRDRNVRKEPGISWLELKNLV 542
           RISEEIIKLDPLDAASYVLLSNIHASARNW NVS+IRKAMRDR+VRKEPGISWLELKNLV
Sbjct: 485 RISEEIIKLDPLDAASYVLLSNIHASARNWLNVSQIRKAMRDRSVRKEPGISWLELKNLV 544

Query: 543 HQFSMGDKSHPQYFEIDLYLKELMSELKRHGYVPDLGSVLHDMDNEEKEYNLAHHSEKFA 581
           HQFSMGDKSHPQYFEIDLYLKELMSELK+HGYVP+LGSVLHDMDNEEKEYNLAHHSEKFA
Sbjct: 545 HQFSMGDKSHPQYFEIDLYLKELMSELKQHGYVPELGSVLHDMDNEEKEYNLAHHSEKFA 604

[Close]
BLAST of Cmc01g0006541 vs. NCBI nr
Match: KAA0031550.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK07003.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 1078.9 bits (2789), Expect = 0.0e+00
Identity = 556/641 (86.74%), Postives = 556/641 (86.74%), Query Frame = 0 

Query: 25  MKISSSASLQEFTSLCNDGRIRQAYDTFK------------------------------- 84
           MKISSSASLQEFTSLCNDGRIRQAYDTFK                               
Sbjct: 1   MKISSSASLQEFTSLCNDGRIRQAYDTFKFEIWSDPSLFSHLLQSCIKLGSLFGGKQVHS 60

Query: 85  ------------------------------------------------------LGDLEN 144
                                                                 LGDLEN
Sbjct: 61  LIITSGGSKDKFISNHLLNLYSKLGQFKSSLVLFSNMPRRNVMSFNILINGYLQLGDLEN 120

Query: 145 AQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGSVLRGCAG 204
           AQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGSVLRGCAG
Sbjct: 121 AQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGSVLRGCAG 180

Query: 205 LRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTL 264
           LRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTL
Sbjct: 181 LRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTL 240

Query: 265 IAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEVIKAGA 324
           IAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEVIKAGA
Sbjct: 241 IAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEVIKAGA 300

Query: 325 SSVLAVISSLISMYSRSGCLEDSIKAFVDREDFDVVLWSSMIAAYGFHGRGEEAVELFHQ 384
           SSVLAVISSLISMYSRSGCLEDSIKAFVDREDFDVVLWSSMIAAYGFHGRGEEAVELFHQ
Sbjct: 301 SSVLAVISSLISMYSRSGCLEDSIKAFVDREDFDVVLWSSMIAAYGFHGRGEEAVELFHQ 360

Query: 385 MEDLKMEANEVTFLSLLYACSHSGLKEKGTEYLDLMVKKYKLKPRIEHYTCVVDLLGRAG 444
           MEDLKMEANEVTFLSLLYACSHSGLKEKGTEYLDLMVKKYKLKPRIEHYTCVVDLLGRAG
Sbjct: 361 MEDLKMEANEVTFLSLLYACSHSGLKEKGTEYLDLMVKKYKLKPRIEHYTCVVDLLGRAG 420

Query: 445 RLEEAEGMIRSMPVKPDGIIWKTLLAACKLHKEAEMAKRISEEIIKLDPLDAASYVLLSN 504
           RLEEAEGMIRSMPVKPDGIIWKTLLAACKLHKEAEMAKRISEEIIKLDPLDAASYVLLSN
Sbjct: 421 RLEEAEGMIRSMPVKPDGIIWKTLLAACKLHKEAEMAKRISEEIIKLDPLDAASYVLLSN 480

Query: 505 IHASARNWPNVSEIRKAMRDRNVRKEPGISWLELKNLVHQFSMGDKSHPQYFEIDLYLKE 564
           IHASARNWPNVSEIRKAMRDRNVRKEPGISWLELKNLVHQFSMGDKSHPQYFEIDLYLKE
Sbjct: 481 IHASARNWPNVSEIRKAMRDRNVRKEPGISWLELKNLVHQFSMGDKSHPQYFEIDLYLKE 540

Query: 565 LMSELKRHGYVPDLGSVLHDMDNEEKEYNLAHHSEKFAIAFALMNTSENVPIRVMKNLRV 581
           LMSELKRHGYVPDLGSVLHDMDNEEKEYNLAHHSEKFAIAFALMNTSENVPIRVMKNLRV
Sbjct: 541 LMSELKRHGYVPDLGSVLHDMDNEEKEYNLAHHSEKFAIAFALMNTSENVPIRVMKNLRV 600

[Close]
BLAST of Cmc01g0006541 vs. ExPASy Swiss-Prot
Match: Q8S9M4 (Pentatricopeptide repeat-containing protein At2g41080 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H29 PE=2 SV=2)

HSP 1 Score: 720.3 bits (1858), Expect = 1.7e-206
Identity = 348/529 (65.78%), Postives = 427/529 (80.72%), Query Frame = 0 

Query: 53  KLGDLENAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGS 112
           + GDL NA+K+FDEM +R + TWNAMIAGL QFEFN++ LSLF+EM+GLGF PDE+TLGS
Sbjct: 122 RAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGS 181

Query: 113 VLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRT 172
           V  G AGLRS+  GQ++H   +K G EL  VV SSLAHMY+++G L DGE +I+SMP+R 
Sbjct: 182 VFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRN 241

Query: 173 VVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHA 232
           +VAWNTLI G AQNGCPE VL  Y MMK++G RP+KITFV+VLS+CS+LA  GQGQQIHA
Sbjct: 242 LVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHA 301

Query: 233 EVIKAGASSVLAVISSLISMYSRSGCLEDSIKAFVDREDFDVVLWSSMIAAYGFHGRGEE 292
           E IK GASSV+AV+SSLISMYS+ GCL D+ KAF +RED D V+WSSMI+AYGFHG+G+E
Sbjct: 302 EAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDE 361

Query: 293 AVELFHQM-EDLKMEANEVTFLSLLYACSHSGLKEKGTEYLDLMVKKYKLKPRIEHYTCV 352
           A+ELF+ M E   ME NEV FL+LLYACSHSGLK+KG E  D+MV+KY  KP ++HYTCV
Sbjct: 362 AIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCV 421

Query: 353 VDLLGRAGRLEEAEGMIRSMPVKPDGIIWKTLLAACKLHKEAEMAKRISEEIIKLDPLDA 412
           VDLLGRAG L++AE +IRSMP+K D +IWKTLL+AC +HK AEMA+R+ +EI+++DP D+
Sbjct: 422 VDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDS 481

Query: 413 ASYVLLSNIHASARNWPNVSEIRKAMRDRNVRKEPGISWLELKNLVHQFSMGDKSHPQYF 472
           A YVLL+N+HASA+ W +VSE+RK+MRD+NV+KE GISW E K  VHQF MGD+S  +  
Sbjct: 482 ACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSK 541

Query: 473 EIDLYLKELMSELKRHGYVPDLGSVLHDMDNEEKEYNLAHHSEKFAIAFALMNTSENVPI 532
           EI  YLKEL  E+K  GY PD  SVLHDMD EEKE +L  HSEK A+AFALM   E  PI
Sbjct: 542 EIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPI 601

Query: 533 RVMKNLRVCNDCHNAIKCISRIRNREIIVRDASRFHHFKDGECSCGNYW 581
           R++KNLRVC+DCH A K IS I+NREI +RD SRFHHF +G+CSCG+YW
Sbjct: 602 RIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 650

[Close]
BLAST of Cmc01g0006541 vs. ExPASy Swiss-Prot
Match: Q9LIQ7 (Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H87 PE=3 SV=1)

HSP 1 Score: 465.3 bits (1196), Expect = 1.0e-129
Identity = 228/528 (43.18%), Postives = 329/528 (62.31%), Query Frame = 0 

Query: 53  KLGDLENAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGS 112
           K G LE A+K+F++M +R+  TW  +I+G +Q +    AL  F +M   G+ P+EFTL S
Sbjct: 107 KCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSS 166

Query: 113 VLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRT 172
           V++  A  R    G ++H   +KCGF+ +  VGS+L  +Y + G + D + +  ++  R 
Sbjct: 167 VIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRN 226

Query: 173 VVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHA 232
            V+WN LIAG A+    E+ L  +  M   GFRP   ++ S+  ACS    L QG+ +HA
Sbjct: 227 DVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHA 286

Query: 233 EVIKAGASSVLAVISSLISMYSRSGCLEDSIKAFVDREDFDVVLWSSMIAAYGFHGRGEE 292
            +IK+G   V    ++L+ MY++SG + D+ K F      DVV W+S++ AY  HG G+E
Sbjct: 287 YMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKE 346

Query: 293 AVELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYLDLMVKKYKLKPRIEHYTCVV 352
           AV  F +M  + +  NE++FLS+L ACSHSGL ++G  Y +LM KK  + P   HY  VV
Sbjct: 347 AVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELM-KKDGIVPEAWHYVTVV 406

Query: 353 DLLGRAGRLEEAEGMIRSMPVKPDGIIWKTLLAACKLHKEAEMAKRISEEIIKLDPLDAA 412
           DLLGRAG L  A   I  MP++P   IWK LL AC++HK  E+    +E + +LDP D  
Sbjct: 407 DLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPG 466

Query: 413 SYVLLSNIHASARNWPNVSEIRKAMRDRNVRKEPGISWLELKNLVHQFSMGDKSHPQYFE 472
            +V+L NI+AS   W + + +RK M++  V+KEP  SW+E++N +H F   D+ HPQ  E
Sbjct: 467 PHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREE 526

Query: 473 IDLYLKELMSELKRHGYVPDLGSVLHDMDNEEKEYNLAHHSEKFAIAFALMNTSENVPIR 532
           I    +E+++++K  GYVPD   V+  +D +E+E NL +HSEK A+AFAL+NT     I 
Sbjct: 527 IARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIH 586

Query: 533 VMKNLRVCNDCHNAIKCISRIRNREIIVRDASRFHHFKDGECSCGNYW 581
           + KN+RVC DCH AIK  S++  REIIVRD +RFHHFKDG CSC +YW
Sbjct: 587 IKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633

[Close]
BLAST of Cmc01g0006541 vs. ExPASy Swiss-Prot
Match: Q9SHZ8 (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H41 PE=3 SV=1)

HSP 1 Score: 460.7 bits (1184), Expect = 2.5e-128
Identity = 228/563 (40.50%), Postives = 350/563 (62.17%), Query Frame = 0 

Query: 53  KLGDLENAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFL-PDEFTLG 112
           ++G ++ A   F++M+ER+I TWN+MI+G  Q  ++ +AL +F +M     L PD FTL 
Sbjct: 224 QVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLA 283

Query: 113 SVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHM-------------------- 172
           SVL  CA L  L  G+++H+ ++  GF++S +V ++L  M                    
Sbjct: 284 SVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTK 343

Query: 173 -------------YIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNM 232
                        YIK G ++  + +  S+  R VVAW  +I G  Q+G   E +N +  
Sbjct: 344 DLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRS 403

Query: 233 MKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEVIKAGASSVLAVISSLISMYSRSGC 292
           M   G RP+  T  ++LS  S LA+L  G+QIH   +K+G    ++V ++LI+MY+++G 
Sbjct: 404 MVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGN 463

Query: 293 LEDSIKAF-VDREDFDVVLWSSMIAAYGFHGRGEEAVELFHQMEDLKMEANEVTFLSLLY 352
           +  + +AF + R + D V W+SMI A   HG  EEA+ELF  M    +  + +T++ +  
Sbjct: 464 ITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFS 523

Query: 353 ACSHSGLKEKGTEYLDLMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVKPDG 412
           AC+H+GL  +G +Y D+M    K+ P + HY C+VDL GRAG L+EA+  I  MP++PD 
Sbjct: 524 ACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDV 583

Query: 413 IIWKTLLAACKLHKEAEMAKRISEEIIKLDPLDAASYVLLSNIHASARNWPNVSEIRKAM 472
           + W +LL+AC++HK  ++ K  +E ++ L+P ++ +Y  L+N++++   W   ++IRK+M
Sbjct: 584 VTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSM 643

Query: 473 RDRNVRKEPGISWLELKNLVHQFSMGDKSHPQYFEIDLYLKELMSELKRHGYVPDLGSVL 532
           +D  V+KE G SW+E+K+ VH F + D +HP+  EI + +K++  E+K+ GYVPD  SVL
Sbjct: 644 KDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVL 703

Query: 533 HDMDNEEKEYNLAHHSEKFAIAFALMNTSENVPIRVMKNLRVCNDCHNAIKCISRIRNRE 581
           HD++ E KE  L HHSEK AIAF L++T +   +R+MKNLRVCNDCH AIK IS++  RE
Sbjct: 704 HDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGRE 763

[Close]
BLAST of Cmc01g0006541 vs. ExPASy Swiss-Prot
Match: Q9LW63 (Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H32 PE=3 SV=1)

HSP 1 Score: 449.9 bits (1156), Expect = 4.4e-125
Identity = 215/524 (41.03%), Postives = 327/524 (62.40%), Query Frame = 0 

Query: 57  LENAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGSVLRG 116
           +++ +++F+ M  +++ ++N +IAG  Q    + AL + +EM      PD FTL SVL  
Sbjct: 192 IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPI 251

Query: 117 CAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVAW 176
            +    ++ G+E+H  +++ G +    +GSSL  MY KS  + D E++   +  R  ++W
Sbjct: 252 FSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISW 311

Query: 177 NTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEVIK 236
           N+L+AG  QNG   E L  +  M  A  +P  + F SV+ AC+ LATL  G+Q+H  V++
Sbjct: 312 NSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLR 371

Query: 237 AGASSVLAVISSLISMYSRSGCLEDSIKAFVDREDFDVVLWSSMIAAYGFHGRGEEAVEL 296
            G  S + + S+L+ MYS+ G ++ + K F      D V W+++I  +  HG G EAV L
Sbjct: 372 GGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSL 431

Query: 297 FHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYLDLMVKKYKLKPRIEHYTCVVDLLG 356
           F +M+   ++ N+V F+++L ACSH GL ++   Y + M K Y L   +EHY  V DLLG
Sbjct: 432 FEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLG 491

Query: 357 RAGRLEEAEGMIRSMPVKPDGIIWKTLLAACKLHKEAEMAKRISEEIIKLDPLDAASYVL 416
           RAG+LEEA   I  M V+P G +W TLL++C +HK  E+A++++E+I  +D  +  +YVL
Sbjct: 492 RAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVL 551

Query: 417 LSNIHASARNWPNVSEIRKAMRDRNVRKEPGISWLELKNLVHQFSMGDKSHPQYFEIDLY 476
           + N++AS   W  ++++R  MR + +RK+P  SW+E+KN  H F  GD+SHP   +I+ +
Sbjct: 552 MCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEF 611

Query: 477 LKELMSELKRHGYVPDLGSVLHDMDNEEKEYNLAHHSEKFAIAFALMNTSENVPIRVMKN 536
           LK +M ++++ GYV D   VLHD+D E K   L  HSE+ A+AF ++NT     IRV KN
Sbjct: 612 LKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKN 671

Query: 537 LRVCNDCHNAIKCISRIRNREIIVRDASRFHHFKDGECSCGNYW 581
           +R+C DCH AIK IS+I  REIIVRD SRFHHF  G CSCG+YW
Sbjct: 672 IRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715

[Close]
BLAST of Cmc01g0006541 vs. ExPASy Swiss-Prot
Match: Q9ZUW3 (Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H60 PE=2 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 1.3e-124
Identity = 219/525 (41.71%), Postives = 345/525 (65.71%), Query Frame = 0 

Query: 59  NAQKLFDEMS-ERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGSVLRGC 118
           +A +LF E+    N+ +W AMI+G  Q +  ++A+ LF EM   G  P+EFT   +L   
Sbjct: 348 DALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTAL 407

Query: 119 AGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVAWN 178
                +++  EVHA ++K  +E SS VG++L   Y+K G + +  K+   +  + +VAW+
Sbjct: 408 ----PVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWS 467

Query: 179 TLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSEL-ATLGQGQQIHAEVIK 238
            ++AG AQ G  E  +  +  +   G +P++ TF S+L+ C+   A++GQG+Q H   IK
Sbjct: 468 AMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIK 527

Query: 239 AGASSVLAVISSLISMYSRSGCLEDSIKAFVDREDFDVVLWSSMIAAYGFHGRGEEAVEL 298
           +   S L V S+L++MY++ G +E + + F  + + D+V W+SMI+ Y  HG+  +A+++
Sbjct: 528 SRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDV 587

Query: 299 FHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYLDLMVKKYKLKPRIEHYTCVVDLLG 358
           F +M+  K++ + VTF+ +  AC+H+GL E+G +Y D+MV+  K+ P  EH +C+VDL  
Sbjct: 588 FKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYS 647

Query: 359 RAGRLEEAEGMIRSMPVKPDGIIWKTLLAACKLHKEAEMAKRISEEIIKLDPLDAASYVL 418
           RAG+LE+A  +I +MP      IW+T+LAAC++HK+ E+ +  +E+II + P D+A+YVL
Sbjct: 648 RAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVL 707

Query: 419 LSNIHASARNWPNVSEIRKAMRDRNVRKEPGISWLELKNLVHQFSMGDKSHPQYFEIDLY 478
           LSN++A + +W   +++RK M +RNV+KEPG SW+E+KN  + F  GD+SHP   +I + 
Sbjct: 708 LSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMK 767

Query: 479 LKELMSELKRHGYVPDLGSVLHDMDNEEKEYNLAHHSEKFAIAFALMNTSENVPIRVMKN 538
           L++L + LK  GY PD   VL D+D+E KE  LA HSE+ AIAF L+ T +  P+ ++KN
Sbjct: 768 LEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKN 827

Query: 539 LRVCNDCHNAIKCISRIRNREIIVRDASRFHHF-KDGECSCGNYW 581
           LRVC DCH  IK I++I  REI+VRD++RFHHF  DG CSCG++W
Sbjct: 828 LRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868

[Close]
BLAST of Cmc01g0006541 vs. ExPASy TrEMBL
Match: A0A1S4E0C2 (pentatricopeptide repeat-containing protein At2g41080 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495490 PE=3 SV=1)

HSP 1 Score: 1148.3 bits (2969), Expect = 0.0e+00
Identity = 580/608 (95.39%), Postives = 580/608 (95.39%), Query Frame = 0 

Query: 1   MGKPSGSFNAFLNPFYSFTVRSLSMKISSSASLQEFTSLCNDGRIRQAYDTFK------- 60
           MGKPSGSFNAFLNPFYSFTVRSLSMKISSSASLQEFTSLCNDGRIRQAYDTFK       
Sbjct: 1   MGKPSGSFNAFLNPFYSFTVRSLSMKISSSASLQEFTSLCNDGRIRQAYDTFKVEIWSDP 60

Query: 61  ---------------------LGDLENAQKLFDEMSERNIATWNAMIAGLTQFEFNKQAL 120
                                LGDLENAQKLFDEMSERNIATWNAMIAGLTQFEFNKQAL
Sbjct: 61  SLFSHLLQSCIKLGSLFGGKQLGDLENAQKLFDEMSERNIATWNAMIAGLTQFEFNKQAL 120

Query: 121 SLFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMY 180
           SLFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMY
Sbjct: 121 SLFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMY 180

Query: 181 IKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFV 240
           IKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFV
Sbjct: 181 IKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFV 240

Query: 241 SVLSACSELATLGQGQQIHAEVIKAGASSVLAVISSLISMYSRSGCLEDSIKAFVDREDF 300
           SVLSACSELATLGQGQQIHAEVIKAGASSVLAVISSLISMYSRSGCLEDSIKAFVDREDF
Sbjct: 241 SVLSACSELATLGQGQQIHAEVIKAGASSVLAVISSLISMYSRSGCLEDSIKAFVDREDF 300

Query: 301 DVVLWSSMIAAYGFHGRGEEAVELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYL 360
           DVVLWSSMIAAYGFHGRGEEAVELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYL
Sbjct: 301 DVVLWSSMIAAYGFHGRGEEAVELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYL 360

Query: 361 DLMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVKPDGIIWKTLLAACKLHKE 420
           DLMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVKPDGIIWKTLLAACKLHKE
Sbjct: 361 DLMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVKPDGIIWKTLLAACKLHKE 420

Query: 421 AEMAKRISEEIIKLDPLDAASYVLLSNIHASARNWPNVSEIRKAMRDRNVRKEPGISWLE 480
           AEMAKRISEEIIKLDPLDAASYVLLSNIHASARNWPNVSEIRKAMRDRNVRKEPGISWLE
Sbjct: 421 AEMAKRISEEIIKLDPLDAASYVLLSNIHASARNWPNVSEIRKAMRDRNVRKEPGISWLE 480

Query: 481 LKNLVHQFSMGDKSHPQYFEIDLYLKELMSELKRHGYVPDLGSVLHDMDNEEKEYNLAHH 540
           LKNLVHQFSMGDKSHPQYFEIDLYLKELMSELKRHGYVPDLGSVLHDMDNEEKEYNLAHH
Sbjct: 481 LKNLVHQFSMGDKSHPQYFEIDLYLKELMSELKRHGYVPDLGSVLHDMDNEEKEYNLAHH 540

Query: 541 SEKFAIAFALMNTSENVPIRVMKNLRVCNDCHNAIKCISRIRNREIIVRDASRFHHFKDG 581
           SEKFAIAFALMNTSENVPIRVMKNLRVCNDCHNAIKCISRIRNREIIVRDASRFHHFKDG
Sbjct: 541 SEKFAIAFALMNTSENVPIRVMKNLRVCNDCHNAIKCISRIRNREIIVRDASRFHHFKDG 600

[Close]
BLAST of Cmc01g0006541 vs. ExPASy TrEMBL
Match: A0A1S3C1T8 (pentatricopeptide repeat-containing protein At2g41080 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495490 PE=3 SV=1)

HSP 1 Score: 1126.3 bits (2912), Expect = 0.0e+00
Identity = 580/665 (87.22%), Postives = 580/665 (87.22%), Query Frame = 0 

Query: 1   MGKPSGSFNAFLNPFYSFTVRSLSMKISSSASLQEFTSLCNDGRIRQAYDTFK------- 60
           MGKPSGSFNAFLNPFYSFTVRSLSMKISSSASLQEFTSLCNDGRIRQAYDTFK       
Sbjct: 1   MGKPSGSFNAFLNPFYSFTVRSLSMKISSSASLQEFTSLCNDGRIRQAYDTFKVEIWSDP 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  SLFSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNLYSKLGQFKSSLVLFSN 120

Query: 121 ------------------LGDLENAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLF 180
                             LGDLENAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLF
Sbjct: 121 MPRRNLMSFNILINGYLQLGDLENAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLF 180

Query: 181 KEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKS 240
           KEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKS
Sbjct: 181 KEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKS 240

Query: 241 GSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVL 300
           GSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVL
Sbjct: 241 GSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVL 300

Query: 301 SACSELATLGQGQQIHAEVIKAGASSVLAVISSLISMYSRSGCLEDSIKAFVDREDFDVV 360
           SACSELATLGQGQQIHAEVIKAGASSVLAVISSLISMYSRSGCLEDSIKAFVDREDFDVV
Sbjct: 301 SACSELATLGQGQQIHAEVIKAGASSVLAVISSLISMYSRSGCLEDSIKAFVDREDFDVV 360

Query: 361 LWSSMIAAYGFHGRGEEAVELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYLDLM 420
           LWSSMIAAYGFHGRGEEAVELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYLDLM
Sbjct: 361 LWSSMIAAYGFHGRGEEAVELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYLDLM 420

Query: 421 VKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVKPDGIIWKTLLAACKLHKEAEM 480
           VKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVKPDGIIWKTLLAACKLHKEAEM
Sbjct: 421 VKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVKPDGIIWKTLLAACKLHKEAEM 480

Query: 481 AKRISEEIIKLDPLDAASYVLLSNIHASARNWPNVSEIRKAMRDRNVRKEPGISWLELKN 540
           AKRISEEIIKLDPLDAASYVLLSNIHASARNWPNVSEIRKAMRDRNVRKEPGISWLELKN
Sbjct: 481 AKRISEEIIKLDPLDAASYVLLSNIHASARNWPNVSEIRKAMRDRNVRKEPGISWLELKN 540

Query: 541 LVHQFSMGDKSHPQYFEIDLYLKELMSELKRHGYVPDLGSVLHDMDNEEKEYNLAHHSEK 581
           LVHQFSMGDKSHPQYFEIDLYLKELMSELKRHGYVPDLGSVLHDMDNEEKEYNLAHHSEK
Sbjct: 541 LVHQFSMGDKSHPQYFEIDLYLKELMSELKRHGYVPDLGSVLHDMDNEEKEYNLAHHSEK 600

[Close]
BLAST of Cmc01g0006541 vs. ExPASy TrEMBL
Match: A0A5A7SLF2 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003190 PE=3 SV=1)

HSP 1 Score: 1078.9 bits (2789), Expect = 0.0e+00
Identity = 556/641 (86.74%), Postives = 556/641 (86.74%), Query Frame = 0 

Query: 25  MKISSSASLQEFTSLCNDGRIRQAYDTFK------------------------------- 84
           MKISSSASLQEFTSLCNDGRIRQAYDTFK                               
Sbjct: 1   MKISSSASLQEFTSLCNDGRIRQAYDTFKFEIWSDPSLFSHLLQSCIKLGSLFGGKQVHS 60

Query: 85  ------------------------------------------------------LGDLEN 144
                                                                 LGDLEN
Sbjct: 61  LIITSGGSKDKFISNHLLNLYSKLGQFKSSLVLFSNMPRRNVMSFNILINGYLQLGDLEN 120

Query: 145 AQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGSVLRGCAG 204
           AQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGSVLRGCAG
Sbjct: 121 AQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGSVLRGCAG 180

Query: 205 LRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTL 264
           LRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTL
Sbjct: 181 LRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTL 240

Query: 265 IAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEVIKAGA 324
           IAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEVIKAGA
Sbjct: 241 IAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEVIKAGA 300

Query: 325 SSVLAVISSLISMYSRSGCLEDSIKAFVDREDFDVVLWSSMIAAYGFHGRGEEAVELFHQ 384
           SSVLAVISSLISMYSRSGCLEDSIKAFVDREDFDVVLWSSMIAAYGFHGRGEEAVELFHQ
Sbjct: 301 SSVLAVISSLISMYSRSGCLEDSIKAFVDREDFDVVLWSSMIAAYGFHGRGEEAVELFHQ 360

Query: 385 MEDLKMEANEVTFLSLLYACSHSGLKEKGTEYLDLMVKKYKLKPRIEHYTCVVDLLGRAG 444
           MEDLKMEANEVTFLSLLYACSHSGLKEKGTEYLDLMVKKYKLKPRIEHYTCVVDLLGRAG
Sbjct: 361 MEDLKMEANEVTFLSLLYACSHSGLKEKGTEYLDLMVKKYKLKPRIEHYTCVVDLLGRAG 420

Query: 445 RLEEAEGMIRSMPVKPDGIIWKTLLAACKLHKEAEMAKRISEEIIKLDPLDAASYVLLSN 504
           RLEEAEGMIRSMPVKPDGIIWKTLLAACKLHKEAEMAKRISEEIIKLDPLDAASYVLLSN
Sbjct: 421 RLEEAEGMIRSMPVKPDGIIWKTLLAACKLHKEAEMAKRISEEIIKLDPLDAASYVLLSN 480

Query: 505 IHASARNWPNVSEIRKAMRDRNVRKEPGISWLELKNLVHQFSMGDKSHPQYFEIDLYLKE 564
           IHASARNWPNVSEIRKAMRDRNVRKEPGISWLELKNLVHQFSMGDKSHPQYFEIDLYLKE
Sbjct: 481 IHASARNWPNVSEIRKAMRDRNVRKEPGISWLELKNLVHQFSMGDKSHPQYFEIDLYLKE 540

Query: 565 LMSELKRHGYVPDLGSVLHDMDNEEKEYNLAHHSEKFAIAFALMNTSENVPIRVMKNLRV 581
           LMSELKRHGYVPDLGSVLHDMDNEEKEYNLAHHSEKFAIAFALMNTSENVPIRVMKNLRV
Sbjct: 541 LMSELKRHGYVPDLGSVLHDMDNEEKEYNLAHHSEKFAIAFALMNTSENVPIRVMKNLRV 600

[Close]
BLAST of Cmc01g0006541 vs. ExPASy TrEMBL
Match: A0A6J1HWJ8 (pentatricopeptide repeat-containing protein At2g41080 OS=Cucurbita maxima OX=3661 GN=LOC111468145 PE=3 SV=1)

HSP 1 Score: 1021.1 bits (2639), Expect = 1.8e-294
Identity = 521/665 (78.35%), Postives = 552/665 (83.01%), Query Frame = 0 

Query: 1   MGKPSGSFNAFLNPFYSFTVRSLSMKISSSASLQEFTSLCNDGRIRQAYDTFK------- 60
           MGKPS SF+A  NP ++ TVR LS K +SSASLQEFTSLC+ GRI QAY+ FK       
Sbjct: 1   MGKPSRSFDALFNPLHALTVRLLSTK-TSSASLQEFTSLCSGGRITQAYERFKSEIWSDP 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  SLFSHLLQSCIKLGSLFGGEQVHSLVITSGCAYDKFISNHLLNLYSKLGNLKSSLVLFSQ 120

Query: 121 ------------------LGDLENAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLF 180
                             LGDLE+AQKLFDEMSERNIATWNAMI GLTQFE+N+QALSLF
Sbjct: 121 MPRRNIMSYNILINGYLQLGDLESAQKLFDEMSERNIATWNAMITGLTQFEYNEQALSLF 180

Query: 181 KEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKS 240
           +EMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACL+KCGFEL+ VVGSSLAHMY+KS
Sbjct: 181 REMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLMKCGFELNLVVGSSLAHMYMKS 240

Query: 241 GSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVL 300
           GSLSDGEKLIKSMPIR VVAWNTLIAGKAQNGC EEVLNQYNMMKMAGFRPDKITFVSV+
Sbjct: 241 GSLSDGEKLIKSMPIRNVVAWNTLIAGKAQNGCSEEVLNQYNMMKMAGFRPDKITFVSVI 300

Query: 301 SACSELATLGQGQQIHAEVIKAGASSVLAVISSLISMYSRSGCLEDSIKAFVDREDFDVV 360
           SACSELATLGQGQQIHAEVIKAGA SV+AV+SSLISMYSRSGCLEDS+K F+DRED DVV
Sbjct: 301 SACSELATLGQGQQIHAEVIKAGAGSVVAVVSSLISMYSRSGCLEDSVKTFLDREDADVV 360

Query: 361 LWSSMIAAYGFHGRGEEAVELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYLDLM 420
           LWS+MIAAYGFHGRGEEA+ELFHQME+LKMEANEVTFLSLLYACSH GLKEKGTEYLDLM
Sbjct: 361 LWSAMIAAYGFHGRGEEAIELFHQMEELKMEANEVTFLSLLYACSHCGLKEKGTEYLDLM 420

Query: 421 VKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVKPDGIIWKTLLAACKLHKEAEM 480
           V++YKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVK DGIIWKTLL+ACKLHK+AEM
Sbjct: 421 VEQYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVKADGIIWKTLLSACKLHKKAEM 480

Query: 481 AKRISEEIIKLDPLDAASYVLLSNIHASARNWPNVSEIRKAMRDRNVRKEPGISWLELKN 540
           AKRISEEI+KLDPLDAASYVLLSNIHASARNWP+VSEIRKAMRDRNV+KEPGISWLELKN
Sbjct: 481 AKRISEEILKLDPLDAASYVLLSNIHASARNWPDVSEIRKAMRDRNVKKEPGISWLELKN 540

Query: 541 LVHQFSMGDKSHPQYFEIDLYLKELMSELKRHGYVPDLGSVLHDMDNEEKEYNLAHHSEK 581
           LVHQFSMGDKSHPQY EID YLKELMSE+K HGYVPD+GSVLHDMDNEEKEYNLAHHSEK
Sbjct: 541 LVHQFSMGDKSHPQYLEIDSYLKELMSEMKLHGYVPDIGSVLHDMDNEEKEYNLAHHSEK 600

[Close]
BLAST of Cmc01g0006541 vs. ExPASy TrEMBL
Match: A0A6J1GM53 (pentatricopeptide repeat-containing protein At2g41080 OS=Cucurbita moschata OX=3662 GN=LOC111455573 PE=3 SV=1)

HSP 1 Score: 1016.9 bits (2628), Expect = 3.3e-293
Identity = 519/665 (78.05%), Postives = 549/665 (82.56%), Query Frame = 0 

Query: 1   MGKPSGSFNAFLNPFYSFTVRSLSMKISSSASLQEFTSLCNDGRIRQAYDTFK------- 60
           MG+PS SF+A  NP ++  VRSLS K +SSASLQEFTSLC+ GRI QAY+ FK       
Sbjct: 1   MGQPSRSFDALFNPLHALAVRSLSTK-TSSASLQEFTSLCSGGRITQAYERFKSEIWSDP 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  SLFSHLLQSCIKLGSLFGGEQVHSLVITSGCANDKFISNHLLNLYSKLGNLKSSLVLFSH 120

Query: 121 ------------------LGDLENAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLF 180
                             LGDLE+AQKLFDEMSERNIATWNAMI GLTQFE+N+QAL LF
Sbjct: 121 MPRRNIMSYNILINGYLQLGDLESAQKLFDEMSERNIATWNAMITGLTQFEYNEQALGLF 180

Query: 181 KEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKS 240
           +EMYGLG LPDEFTLGSVLRGCAGLRSLLAGQEVHACL+KCGFEL+ VVGSSLAHMY+KS
Sbjct: 181 REMYGLGILPDEFTLGSVLRGCAGLRSLLAGQEVHACLMKCGFELNLVVGSSLAHMYMKS 240

Query: 241 GSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVL 300
           GSLSDGEKLIKSMPIR VVAWNTLIAGKAQNGC EEVLNQYNMMKMAGFRPDKITFVSV+
Sbjct: 241 GSLSDGEKLIKSMPIRNVVAWNTLIAGKAQNGCSEEVLNQYNMMKMAGFRPDKITFVSVI 300

Query: 301 SACSELATLGQGQQIHAEVIKAGASSVLAVISSLISMYSRSGCLEDSIKAFVDREDFDVV 360
           SACSELATLGQGQQIHAEVIKAGA SV+AV+SSLISMYSRSGCLEDS+K FVDRED DVV
Sbjct: 301 SACSELATLGQGQQIHAEVIKAGAGSVVAVVSSLISMYSRSGCLEDSVKTFVDREDADVV 360

Query: 361 LWSSMIAAYGFHGRGEEAVELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYLDLM 420
           LWS+MIAAYGFHGRGEEA+ELFHQME+LKMEANEVTFLSLLYACSH GLKEKGTEYLDLM
Sbjct: 361 LWSAMIAAYGFHGRGEEAIELFHQMEELKMEANEVTFLSLLYACSHCGLKEKGTEYLDLM 420

Query: 421 VKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVKPDGIIWKTLLAACKLHKEAEM 480
           V++YKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVK DGIIWKTLL+ACKLHK AEM
Sbjct: 421 VEQYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVKADGIIWKTLLSACKLHKNAEM 480

Query: 481 AKRISEEIIKLDPLDAASYVLLSNIHASARNWPNVSEIRKAMRDRNVRKEPGISWLELKN 540
           AKRISEEI+KLDPLDAASYVLLSNIHASARNWP+VSEIRKAMRDRNV+KEPGISWLELKN
Sbjct: 481 AKRISEEILKLDPLDAASYVLLSNIHASARNWPDVSEIRKAMRDRNVKKEPGISWLELKN 540

Query: 541 LVHQFSMGDKSHPQYFEIDLYLKELMSELKRHGYVPDLGSVLHDMDNEEKEYNLAHHSEK 581
           LVHQFSMGDKSHPQY EID YLKELMSE+K HGYVPD+GSVLHDMDNEEKEYNLAHHSEK
Sbjct: 541 LVHQFSMGDKSHPQYLEIDSYLKELMSEMKLHGYVPDIGSVLHDMDNEEKEYNLAHHSEK 600

[Close]
BLAST of Cmc01g0006541 vs. TAIR 10
Match: AT2G41080.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 720.3 bits (1858), Expect = 1.2e-207
Identity = 348/529 (65.78%), Postives = 427/529 (80.72%), Query Frame = 0 

Query: 53  KLGDLENAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGS 112
           + GDL NA+K+FDEM +R + TWNAMIAGL QFEFN++ LSLF+EM+GLGF PDE+TLGS
Sbjct: 37  RAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGS 96

Query: 113 VLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRT 172
           V  G AGLRS+  GQ++H   +K G EL  VV SSLAHMY+++G L DGE +I+SMP+R 
Sbjct: 97  VFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRN 156

Query: 173 VVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHA 232
           +VAWNTLI G AQNGCPE VL  Y MMK++G RP+KITFV+VLS+CS+LA  GQGQQIHA
Sbjct: 157 LVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHA 216

Query: 233 EVIKAGASSVLAVISSLISMYSRSGCLEDSIKAFVDREDFDVVLWSSMIAAYGFHGRGEE 292
           E IK GASSV+AV+SSLISMYS+ GCL D+ KAF +RED D V+WSSMI+AYGFHG+G+E
Sbjct: 217 EAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDE 276

Query: 293 AVELFHQM-EDLKMEANEVTFLSLLYACSHSGLKEKGTEYLDLMVKKYKLKPRIEHYTCV 352
           A+ELF+ M E   ME NEV FL+LLYACSHSGLK+KG E  D+MV+KY  KP ++HYTCV
Sbjct: 277 AIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCV 336

Query: 353 VDLLGRAGRLEEAEGMIRSMPVKPDGIIWKTLLAACKLHKEAEMAKRISEEIIKLDPLDA 412
           VDLLGRAG L++AE +IRSMP+K D +IWKTLL+AC +HK AEMA+R+ +EI+++DP D+
Sbjct: 337 VDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDS 396

Query: 413 ASYVLLSNIHASARNWPNVSEIRKAMRDRNVRKEPGISWLELKNLVHQFSMGDKSHPQYF 472
           A YVLL+N+HASA+ W +VSE+RK+MRD+NV+KE GISW E K  VHQF MGD+S  +  
Sbjct: 397 ACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSK 456

Query: 473 EIDLYLKELMSELKRHGYVPDLGSVLHDMDNEEKEYNLAHHSEKFAIAFALMNTSENVPI 532
           EI  YLKEL  E+K  GY PD  SVLHDMD EEKE +L  HSEK A+AFALM   E  PI
Sbjct: 457 EIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPI 516

Query: 533 RVMKNLRVCNDCHNAIKCISRIRNREIIVRDASRFHHFKDGECSCGNYW 581
           R++KNLRVC+DCH A K IS I+NREI +RD SRFHHF +G+CSCG+YW
Sbjct: 517 RIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 565

[Close]
BLAST of Cmc01g0006541 vs. TAIR 10
Match: AT2G22070.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 460.7 bits (1184), Expect = 1.8e-129
Identity = 228/563 (40.50%), Postives = 350/563 (62.17%), Query Frame = 0 

Query: 53  KLGDLENAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFL-PDEFTLG 112
           ++G ++ A   F++M+ER+I TWN+MI+G  Q  ++ +AL +F +M     L PD FTL 
Sbjct: 224 QVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLA 283

Query: 113 SVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHM-------------------- 172
           SVL  CA L  L  G+++H+ ++  GF++S +V ++L  M                    
Sbjct: 284 SVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTK 343

Query: 173 -------------YIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNM 232
                        YIK G ++  + +  S+  R VVAW  +I G  Q+G   E +N +  
Sbjct: 344 DLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRS 403

Query: 233 MKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEVIKAGASSVLAVISSLISMYSRSGC 292
           M   G RP+  T  ++LS  S LA+L  G+QIH   +K+G    ++V ++LI+MY+++G 
Sbjct: 404 MVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGN 463

Query: 293 LEDSIKAF-VDREDFDVVLWSSMIAAYGFHGRGEEAVELFHQMEDLKMEANEVTFLSLLY 352
           +  + +AF + R + D V W+SMI A   HG  EEA+ELF  M    +  + +T++ +  
Sbjct: 464 ITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFS 523

Query: 353 ACSHSGLKEKGTEYLDLMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVKPDG 412
           AC+H+GL  +G +Y D+M    K+ P + HY C+VDL GRAG L+EA+  I  MP++PD 
Sbjct: 524 ACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDV 583

Query: 413 IIWKTLLAACKLHKEAEMAKRISEEIIKLDPLDAASYVLLSNIHASARNWPNVSEIRKAM 472
           + W +LL+AC++HK  ++ K  +E ++ L+P ++ +Y  L+N++++   W   ++IRK+M
Sbjct: 584 VTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSM 643

Query: 473 RDRNVRKEPGISWLELKNLVHQFSMGDKSHPQYFEIDLYLKELMSELKRHGYVPDLGSVL 532
           +D  V+KE G SW+E+K+ VH F + D +HP+  EI + +K++  E+K+ GYVPD  SVL
Sbjct: 644 KDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVL 703

Query: 533 HDMDNEEKEYNLAHHSEKFAIAFALMNTSENVPIRVMKNLRVCNDCHNAIKCISRIRNRE 581
           HD++ E KE  L HHSEK AIAF L++T +   +R+MKNLRVCNDCH AIK IS++  RE
Sbjct: 704 HDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGRE 763

[Close]
BLAST of Cmc01g0006541 vs. TAIR 10
Match: AT3G23330.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 449.9 bits (1156), Expect = 3.1e-126
Identity = 215/524 (41.03%), Postives = 327/524 (62.40%), Query Frame = 0 

Query: 57  LENAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGSVLRG 116
           +++ +++F+ M  +++ ++N +IAG  Q    + AL + +EM      PD FTL SVL  
Sbjct: 192 IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPI 251

Query: 117 CAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVAW 176
            +    ++ G+E+H  +++ G +    +GSSL  MY KS  + D E++   +  R  ++W
Sbjct: 252 FSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISW 311

Query: 177 NTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEVIK 236
           N+L+AG  QNG   E L  +  M  A  +P  + F SV+ AC+ LATL  G+Q+H  V++
Sbjct: 312 NSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLR 371

Query: 237 AGASSVLAVISSLISMYSRSGCLEDSIKAFVDREDFDVVLWSSMIAAYGFHGRGEEAVEL 296
            G  S + + S+L+ MYS+ G ++ + K F      D V W+++I  +  HG G EAV L
Sbjct: 372 GGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSL 431

Query: 297 FHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYLDLMVKKYKLKPRIEHYTCVVDLLG 356
           F +M+   ++ N+V F+++L ACSH GL ++   Y + M K Y L   +EHY  V DLLG
Sbjct: 432 FEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLG 491

Query: 357 RAGRLEEAEGMIRSMPVKPDGIIWKTLLAACKLHKEAEMAKRISEEIIKLDPLDAASYVL 416
           RAG+LEEA   I  M V+P G +W TLL++C +HK  E+A++++E+I  +D  +  +YVL
Sbjct: 492 RAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVL 551

Query: 417 LSNIHASARNWPNVSEIRKAMRDRNVRKEPGISWLELKNLVHQFSMGDKSHPQYFEIDLY 476
           + N++AS   W  ++++R  MR + +RK+P  SW+E+KN  H F  GD+SHP   +I+ +
Sbjct: 552 MCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEF 611

Query: 477 LKELMSELKRHGYVPDLGSVLHDMDNEEKEYNLAHHSEKFAIAFALMNTSENVPIRVMKN 536
           LK +M ++++ GYV D   VLHD+D E K   L  HSE+ A+AF ++NT     IRV KN
Sbjct: 612 LKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKN 671

Query: 537 LRVCNDCHNAIKCISRIRNREIIVRDASRFHHFKDGECSCGNYW 581
           +R+C DCH AIK IS+I  REIIVRD SRFHHF  G CSCG+YW
Sbjct: 672 IRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715

[Close]
BLAST of Cmc01g0006541 vs. TAIR 10
Match: AT2G27610.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 448.4 bits (1152), Expect = 9.0e-126
Identity = 219/525 (41.71%), Postives = 345/525 (65.71%), Query Frame = 0 

Query: 59  NAQKLFDEMS-ERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGSVLRGC 118
           +A +LF E+    N+ +W AMI+G  Q +  ++A+ LF EM   G  P+EFT   +L   
Sbjct: 348 DALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTAL 407

Query: 119 AGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVAWN 178
                +++  EVHA ++K  +E SS VG++L   Y+K G + +  K+   +  + +VAW+
Sbjct: 408 ----PVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWS 467

Query: 179 TLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSEL-ATLGQGQQIHAEVIK 238
            ++AG AQ G  E  +  +  +   G +P++ TF S+L+ C+   A++GQG+Q H   IK
Sbjct: 468 AMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIK 527

Query: 239 AGASSVLAVISSLISMYSRSGCLEDSIKAFVDREDFDVVLWSSMIAAYGFHGRGEEAVEL 298
           +   S L V S+L++MY++ G +E + + F  + + D+V W+SMI+ Y  HG+  +A+++
Sbjct: 528 SRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDV 587

Query: 299 FHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYLDLMVKKYKLKPRIEHYTCVVDLLG 358
           F +M+  K++ + VTF+ +  AC+H+GL E+G +Y D+MV+  K+ P  EH +C+VDL  
Sbjct: 588 FKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYS 647

Query: 359 RAGRLEEAEGMIRSMPVKPDGIIWKTLLAACKLHKEAEMAKRISEEIIKLDPLDAASYVL 418
           RAG+LE+A  +I +MP      IW+T+LAAC++HK+ E+ +  +E+II + P D+A+YVL
Sbjct: 648 RAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVL 707

Query: 419 LSNIHASARNWPNVSEIRKAMRDRNVRKEPGISWLELKNLVHQFSMGDKSHPQYFEIDLY 478
           LSN++A + +W   +++RK M +RNV+KEPG SW+E+KN  + F  GD+SHP   +I + 
Sbjct: 708 LSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMK 767

Query: 479 LKELMSELKRHGYVPDLGSVLHDMDNEEKEYNLAHHSEKFAIAFALMNTSENVPIRVMKN 538
           L++L + LK  GY PD   VL D+D+E KE  LA HSE+ AIAF L+ T +  P+ ++KN
Sbjct: 768 LEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKN 827

Query: 539 LRVCNDCHNAIKCISRIRNREIIVRDASRFHHF-KDGECSCGNYW 581
           LRVC DCH  IK I++I  REI+VRD++RFHHF  DG CSCG++W
Sbjct: 828 LRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868

[Close]
BLAST of Cmc01g0006541 vs. TAIR 10
Match: AT3G24000.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 447.6 bits (1150), Expect = 1.5e-125
Identity = 222/519 (42.77%), Postives = 322/519 (62.04%), Query Frame = 0 

Query: 53  KLGDLENAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGS 112
           K G LE A+K+F++M +R+  TW  +I+G +Q +    AL  F +M   G+ P+EFTL S
Sbjct: 107 KCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSS 166

Query: 113 VLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRT 172
           V++  A  R    G ++H   +KCGF+ +  VGS+L  +Y + G + D + +  ++  R 
Sbjct: 167 VIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRN 226

Query: 173 VVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHA 232
            V+WN LIAG A+    E+ L  +  M   GFRP   ++ S+  ACS    L QG+ +HA
Sbjct: 227 DVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHA 286

Query: 233 EVIKAGASSVLAVISSLISMYSRSGCLEDSIKAFVDREDFDVVLWSSMIAAYGFHGRGEE 292
            +IK+G   V    ++L+ MY++SG + D+ K F      DVV W+S++ AY  HG G+E
Sbjct: 287 YMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKE 346

Query: 293 AVELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYLDLMVKKYKLKPRIEHYTCVV 352
           AV  F +M  + +  NE++FLS+L ACSHSGL ++G  Y +LM KK  + P   HY  VV
Sbjct: 347 AVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELM-KKDGIVPEAWHYVTVV 406

Query: 353 DLLGRAGRLEEAEGMIRSMPVKPDGIIWKTLLAACKLHKEAEMAKRISEEIIKLDPLDAA 412
           DLLGRAG L  A   I  MP++P   IWK LL AC++HK  E+    +E + +LDP D  
Sbjct: 407 DLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPG 466

Query: 413 SYVLLSNIHASARNWPNVSEIRKAMRDRNVRKEPGISWLELKNLVHQFSMGDKSHPQYFE 472
            +V+L NI+AS   W + + +RK M++  V+KEP  SW+E++N +H F   D+ HPQ  E
Sbjct: 467 PHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREE 526

Query: 473 IDLYLKELMSELKRHGYVPDLGSVLHDMDNEEKEYNLAHHSEKFAIAFALMNTSENVPIR 532
           I    +E+++++K  GYVPD   V+  +D +E+E NL +HSEK A+AFAL+NT     I 
Sbjct: 527 IARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIH 586

Query: 533 VMKNLRVCNDCHNAIKCISRIRNREIIVRDASRFHHFKD 572
           + KN+RVC DCH AIK  S++  REIIVRD +RFHHFKD
Sbjct: 587 IKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKD 624

The following BLAST results are available for this feature:
BLAST of Cmc01g0006541 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016901687.10.0e+0095.39PREDICTED: pentatricopeptide repeat-containing protein At2g41080 isoform X2 [Cuc... [more]
XP_008455289.10.0e+0087.22PREDICTED: pentatricopeptide repeat-containing protein At2g41080 isoform X1 [Cuc... [more]
XP_031744315.10.0e+0092.57pentatricopeptide repeat-containing protein At2g41080 isoform X2 [Cucumis sativu... [more]
XP_004137032.10.0e+0084.62pentatricopeptide repeat-containing protein At2g41080 isoform X1 [Cucumis sativu... [more]
KAA0031550.10.0e+0086.74pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK07003... [more]
BLAST of Cmc01g0006541 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8S9M41.7e-20665.78Pentatricopeptide repeat-containing protein At2g41080 OS=Arabidopsis thaliana OX... [more]
Q9LIQ71.0e-12943.18Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidop... [more]
Q9SHZ82.5e-12840.50Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana OX... [more]
Q9LW634.4e-12541.03Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis th... [more]
Q9ZUW31.3e-12441.71Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana OX... [more]
BLAST of Cmc01g0006541 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S4E0C20.0e+0095.39pentatricopeptide repeat-containing protein At2g41080 isoform X2 OS=Cucumis melo... [more]
A0A1S3C1T80.0e+0087.22pentatricopeptide repeat-containing protein At2g41080 isoform X1 OS=Cucumis melo... [more]
A0A5A7SLF20.0e+0086.74Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A6J1HWJ81.8e-29478.35pentatricopeptide repeat-containing protein At2g41080 OS=Cucurbita maxima OX=366... [more]
A0A6J1GM533.3e-29378.05pentatricopeptide repeat-containing protein At2g41080 OS=Cucurbita moschata OX=3... [more]
BLAST of Cmc01g0006541 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G41080.11.2e-20765.78Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT2G22070.11.8e-12940.50pentatricopeptide (PPR) repeat-containing protein [more]
AT3G23330.13.1e-12641.03Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT2G27610.19.0e-12641.71Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT3G24000.11.5e-12542.77Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 172..218
e-value: 8.3E-9
score: 35.5
coord: 273..320
e-value: 4.1E-9
score: 36.5
coord: 71..118
e-value: 1.5E-8
score: 34.7
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 348..371
e-value: 0.0014
score: 16.6
coord: 174..207
e-value: 0.0029
score: 15.7
coord: 275..308
e-value: 6.9E-5
score: 20.8
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 247..266
e-value: 1.4
score: 9.3
coord: 347..372
e-value: 0.0046
score: 17.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 273..307
score: 10.709248
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 172..206
score: 10.073492
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 71..105
score: 10.237912
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 123..237
e-value: 3.1E-17
score: 64.5
coord: 36..122
e-value: 2.3E-15
score: 58.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 244..469
e-value: 4.3E-36
score: 126.8
IPR032867DYW domainPFAMPF14432DYW_deaminasecoord: 446..570
e-value: 9.1E-41
score: 138.7
NoneNo IPR availablePANTHERPTHR24015OS07G0578800 PROTEIN-RELATEDcoord: 63..570
NoneNo IPR availablePANTHERPTHR24015:SF1956OS03G0816600 PROTEINcoord: 63..570

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc01g0006541.1Cmc01g0006541.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009451 RNA modification
cellular_component GO:0043231 intracellular membrane-bounded organelle
molecular_function GO:0005515 protein binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0008270 zinc ion binding