Cmc01g0006471 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0006471
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Small and basic intrinsic protein 2
Location	CMiso1.1chr01: 2312786 .. 2314234 (+)
RNA-Seq Expression	Cmc01g0006471
Synteny	Cmc01g0006471

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCTCATCACTTACTTGGAAACCACAAACACTTTTTCCATAAATAAAAAAATTACATTATTAATTTGGGACGGCACAAACCCAGAATGTACACGTGCCCTCCACCACCACCGTCACATTTAACACCGCCAACACGGAATTCTCTAGCCCCACCTCTTTTTTCTCAATTAAATAATTTACCTTTCTCACGTCGGCGTCGCGTCGGGCGGCTCTCATGATACTTGCTAACGCACACGTGTCGGTCACCGCTTAATCCACTACTTTCTTTTTTCTTTTTTCTTTTTTCTTAATCCTCTCCACCGCTAGATTTTACGAAGGAATTTACTTCCACTTAGCTTAGATCTAATGAATGTAGAAATATGAAAGGAGGATTAAAATCCGAGTTAATTGGTTGATAAAGGAACATTTTTTTGATTAGTTCCAACTTTAAAATTGAAGGTTACAGTCCTTTTCTTACAGTATTTTTACAATAGCACTTACGAGATTCATCATTGAATTACAACATCTCTCAAGCTGCCACAAAAAAAAAAAAAAAAGAAAGACGAAAATAAAGTAGTACCCTATTTCCAAGCACGTTAATTTCTTTTCCCCTTTTTCTAAATCTCTAACAAAATTAAAATCCCAAAAAAATTAATTGAAAACGACTAAAATTAGCGGAGTAATTAAGCATCAACCGGCGGAGCCAGATTAAGATCGAGATTCAGAATTTCCTTCGCCGGTCGGAAGCCAACCAACGACGATGAGTTTGAATCGCTCTGGATCCCACCGGTGAACCTCGACGTCAAATCCACCGTAGCCGGATCGAACCGTATAGGATAACCATGAGCTACGAATTCTGGTTTACCAAAAACGTCTACGAACAAAACTGGACGAACGCTGCCGCCGCCCCCATGCAAAAACTGAGGTTGAATGAATGGAAAAGTTCTTCCAACGCCGTAGCTTCGGGAGATCTCCGGGGAGGGGGTTTTTTCATGGCTGGAGGAGGAAGAGGAGTCGACGGTGCTGCTAGGGCTAGGACTTTGGTTGATCTTGTGAGGAGAAACGTCGATCAACTCGTCAGGAGGAGGGAAGTTGGTTTTAGCCTTAGCGCCACGAAACTGACGGGCGGCAGTGTCGTAAGCACGTGCCGCCTCCTCGGCGGTGTCGAAGGTACCGAGCCAAACGCGGCTTTTCTTGCCGGGATCACGGATCTCGGCGGCGTATCGGCCCCAAGGCCTCTTACGAACGCCACGGAAATGAAGATCTTTACCATTGTTGTTGGAAAGAGAAGGAAGGTTGTTGGGGGAGGATTTTTCCTTGGCAACCATGGCGGTGGTTAGATGAAAAAAGGAGTGGTTGAAGGAGATGTGTATGTTGTTTTGATTACACTGATTTGGGGATAAAATTAGGTGTGCTGGAACCATCATTTATAGTAGCGCCATCAGGATGGAGGTGGGCCCTAGGGATGGA

mRNA sequence

TTTCTCATCACTTACTTGGAAACCACAAACACTTTTTCCATAAATAAAAAAATTACATTATTAATTTGGGACGGCACAAACCCAGAATGTACACGTGCCCTCCACCACCACCGTCACATTTAACACCGCCAACACGGAATTCTCTAGCCCCACCTCTTTTTTCTCAATTAAATAATTTACCTTTCTCACGTCGGCGTCGCGTCGGGCGGCTCTCATGATACTTGCTAACGCACACGTGTCGGTCACCGCTTAATCCACTACTTTCTTTTTTCTTTTTTCTTTTTTCTTAATCCTCTCCACCGCTAGATTTTACGAAGGAATTTACTTCCACTTAGCTTAGATCTAATGAATGTAGAAATATGAAAGGAGGATTAAAATCCGAGTTAATTGGTTGATAAAGGAACATTTTTTTGATTAGTTCCAACTTTAAAATTGAAGGTTACAGTCCTTTTCTTACAGTATTTTTACAATAGCACTTACGAGATTCATCATTGAATTACAACATCTCTCAAGCTGCCACAAAAAAAAAAAAAAAAGAAAGACGAAAATAAAGTAGTACCCTATTTCCAAGCACGTTAATTTCTTTTCCCCTTTTTCTAAATCTCTAACAAAATTAAAATCCCAAAAAAATTAATTGAAAACGACTAAAATTAGCGGAGTAATTAAGCATCAACCGGCGGAGCCAGATTAAGATCGAGATTCAGAATTTCCTTCGCCGGTCGGAAGCCAACCAACGACGATGAGTTTGAATCGCTCTGGATCCCACCGGTGAACCTCGACGTCAAATCCACCGTAGCCGGATCGAACCGTATAGGATAACCATGAGCTACGAATTCTGGTTTACCAAAAACGTCTACGAACAAAACTGGACGAACGCTGCCGCCGCCCCCATGCAAAAACTGAGGTTGAATGAATGGAAAAGTTCTTCCAACGCCGTAGCTTCGGGAGATCTCCGGGGAGGGGGTTTTTTCATGGCTGGAGGAGGAAGAGGAGTCGACGGTGCTGCTAGGGCTAGGACTTTGGTTGATCTTGTGAGGAGAAACGTCGATCAACTCGTCAGGAGGAGGGAAGTTGGTTTTAGCCTTAGCGCCACGAAACTGACGGGCGGCAGTGTCGTAAGCACGTGCCGCCTCCTCGGCGGTGTCGAAGGTACCGAGCCAAACGCGGCTTTTCTTGCCGGGATCACGGATCTCGGCGGCGTATCGGCCCCAAGGCCTCTTACGAACGCCACGGAAATGAAGATCTTTACCATTGTTGTTGGAAAGAGAAGGAAGGTTGTTGGGGGAGGATTTTTCCTTGGCAACCATGGCGGTGGTTAGATGAAAAAAGGAGTGGTTGAAGGAGATGTGTATGTTGTTTTGATTACACTGATTTGGGGATAAAATTAGGTGTGCTGGAACCATCATTTATAGTAGCGCCATCAGGATGGAGGTGGGCCCTAGGGATGGA

Coding sequence (CDS)

ATGAGCTACGAATTCTGGTTTACCAAAAACGTCTACGAACAAAACTGGACGAACGCTGCCGCCGCCCCCATGCAAAAACTGAGGTTGAATGAATGGAAAAGTTCTTCCAACGCCGTAGCTTCGGGAGATCTCCGGGGAGGGGGTTTTTTCATGGCTGGAGGAGGAAGAGGAGTCGACGGTGCTGCTAGGGCTAGGACTTTGGTTGATCTTGTGAGGAGAAACGTCGATCAACTCGTCAGGAGGAGGGAAGTTGGTTTTAGCCTTAGCGCCACGAAACTGACGGGCGGCAGTGTCGTAAGCACGTGCCGCCTCCTCGGCGGTGTCGAAGGTACCGAGCCAAACGCGGCTTTTCTTGCCGGGATCACGGATCTCGGCGGCGTATCGGCCCCAAGGCCTCTTACGAACGCCACGGAAATGAAGATCTTTACCATTGTTGTTGGAAAGAGAAGGAAGGTTGTTGGGGGAGGATTTTTCCTTGGCAACCATGGCGGTGGTTAG

Protein sequence

MSYEFWFTKNVYEQNWTNAAAAPMQKLRLNEWKSSSNAVASGDLRGGGFFMAGGGRGVDGAARARTLVDLVRRNVDQLVRRREVGFSLSATKLTGGSVVSTCRLLGGVEGTEPNAAFLAGITDLGGVSAPRPLTNATEMKIFTIVVGKRRKVVGGGFFLGNHGGG

Homology

[Close]

BLAST of Cmc01g0006471 vs. NCBI nr
Match: OWM81423.1 (hypothetical protein CDL15_Pgr007461 [Punica granatum])

HSP 1 Score: 75.5 bits (184), Expect = 4.9e-10
Identity = 46/97 (47.42%), Postives = 57/97 (58.76%), Query Frame = 0


Query: 55  GRGVDGAARART---LVDLVRRNVDQLVRRREVGFSLSATKLTGGSVVSTCRLLGGVEGT 114
           G GVDGAA AR    +V      V +L  R EVG  L A +L+ G VV TCRLLG VEG 
Sbjct: 166 GGGVDGAALARAARGVVVAAAVLVVELAGRGEVGLGLDAAELSSGRVVRTCRLLGSVEGP 225

Query: 115 EPNAAFLAGITDLGGVSAPRPLTNATEMKIFTIVVGK 149
           EP+A  L G+TDLG V +PR L ++    +   V G+
Sbjct: 226 EPDAGLLPGVTDLGRVPSPRSLPHSPVPHLLATVRGR 262

[Close]

BLAST of Cmc01g0006471 vs. NCBI nr
Match: PON37874.1 (hypothetical protein PanWU01x14_316950 [Parasponia andersonii])

HSP 1 Score: 72.0 bits (175), Expect = 5.4e-09
Identity = 42/99 (42.42%), Postives = 56/99 (56.57%), Query Frame = 0


Query: 56  RGVDGAARARTLVDLVRRN--------VDQLVRRREVGFSLSATKLTGGSVVSTCRLLGG 115
           RG+D  A  R L++ +  +        V  L R  EVG  L A +++GGSVV      GG
Sbjct: 224 RGLDRTALTRALIEALGVDIHDVDVVLVGTLGREGEVGLGLGAAEVSGGSVVGAGGFFGG 283

Query: 116 VEGTEPNAAFLAGITDLGGVSAPRPLTNATEMKIFTIVV 147
           VEG EP+ A LA + DLGGV APRPL ++ EM +  + V
Sbjct: 284 VEGPEPDPALLAWVPDLGGVPAPRPLPHSPEMHLLHVAV 322

[Close]

BLAST of Cmc01g0006471 vs. NCBI nr
Match: KAG2397165.1 (uncharacterized protein HKW66_Vig0145990 [Vigna angularis])

HSP 1 Score: 69.3 bits (168), Expect = 3.5e-08
Identity = 49/126 (38.89%), Postives = 69/126 (54.76%), Query Frame = 0


Query: 55  GRGVDGAARAR----------TLVDLVRRNV-------DQLVRRREVGFSLSATKLTGGS 114
           G G+DGAA AR           +V +V  NV         +  + +VGFS  A ++ GG 
Sbjct: 49  GGGLDGAALARAAAAASVVCYVVVVVVPVNVVVVGDSGGGVGEKGKVGFSFGAAEVAGGG 108

Query: 115 VVSTCRLLGGVEGTEPNAAFLAGITDLGGVSAPRPLTNATEMKIFTIVVGKRRKVVGGGF 164
           VV +   LGGVEG EP+A FLAG+ DLGGV+AP  L++A  + +   +V     ++   F
Sbjct: 109 VVGSGGFLGGVEGAEPDAGFLAGVADLGGVAAPGALSDAAVVNLVGSIVW--LLILYDRF 168

[Close]

BLAST of Cmc01g0006471 vs. NCBI nr
Match: RYR36059.1 (hypothetical protein Ahy_A10g051117 isoform B [Arachis hypogaea])

HSP 1 Score: 67.0 bits (162), Expect = 1.7e-07
Identity = 52/123 (42.28%), Postives = 64/123 (52.03%), Query Frame = 0


Query: 47  GGFFMAGGGRGVDGAARARTLVDLVRRNVDQLV-------RRREVGFSLSATKLTGGSVV 106
           GG  +A      DGAA A   V  V  N D +V       R+ EVG SL AT+L+ G VV
Sbjct: 52  GGVGVAVPAGRFDGAALAGAAV--VVLNDDDVVIVVVVGIRKGEVGLSLWATELSSGGVV 111

Query: 107 STCRLLGGVEGTEPNAAFLAGITDLGGVSAPRPLTNATEMKIFTIVVGKRRKVVGGGFFL 163
            T  +LGGVEG EPNAA LA I+DL  V +P PL N  +M +F         + G     
Sbjct: 112 CTRCVLGGVEGAEPNAALLAWISDLSSVPSPWPLPNTPKMYLFNAGATFAVNLNGSRLIP 171

[Close]

BLAST of Cmc01g0006471 vs. NCBI nr
Match: RYR36058.1 (hypothetical protein Ahy_A10g051117 isoform A [Arachis hypogaea])

HSP 1 Score: 67.0 bits (162), Expect = 1.7e-07
Identity = 52/123 (42.28%), Postives = 64/123 (52.03%), Query Frame = 0


Query: 47  GGFFMAGGGRGVDGAARARTLVDLVRRNVDQLV-------RRREVGFSLSATKLTGGSVV 106
           GG  +A      DGAA A   V  V  N D +V       R+ EVG SL AT+L+ G VV
Sbjct: 52  GGVGVAVPAGRFDGAALAGAAV--VVLNDDDVVIVVVVGIRKGEVGLSLWATELSSGGVV 111

Query: 107 STCRLLGGVEGTEPNAAFLAGITDLGGVSAPRPLTNATEMKIFTIVVGKRRKVVGGGFFL 163
            T  +LGGVEG EPNAA LA I+DL  V +P PL N  +M +F         + G     
Sbjct: 112 CTRCVLGGVEGAEPNAALLAWISDLSSVPSPWPLPNTPKMYLFNAGATFAVNLNGSRLIP 171

[Close]

BLAST of Cmc01g0006471 vs. ExPASy TrEMBL
Match: A0A218X905 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr007461 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.3e-10
Identity = 46/97 (47.42%), Postives = 57/97 (58.76%), Query Frame = 0


Query: 55  GRGVDGAARART---LVDLVRRNVDQLVRRREVGFSLSATKLTGGSVVSTCRLLGGVEGT 114
           G GVDGAA AR    +V      V +L  R EVG  L A +L+ G VV TCRLLG VEG 
Sbjct: 166 GGGVDGAALARAARGVVVAAAVLVVELAGRGEVGLGLDAAELSSGRVVRTCRLLGSVEGP 225

Query: 115 EPNAAFLAGITDLGGVSAPRPLTNATEMKIFTIVVGK 149
           EP+A  L G+TDLG V +PR L ++    +   V G+
Sbjct: 226 EPDAGLLPGVTDLGRVPSPRSLPHSPVPHLLATVRGR 262

[Close]

BLAST of Cmc01g0006471 vs. ExPASy TrEMBL
Match: A0A2P5AMW1 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_316950 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.6e-09
Identity = 42/99 (42.42%), Postives = 56/99 (56.57%), Query Frame = 0


Query: 56  RGVDGAARARTLVDLVRRN--------VDQLVRRREVGFSLSATKLTGGSVVSTCRLLGG 115
           RG+D  A  R L++ +  +        V  L R  EVG  L A +++GGSVV      GG
Sbjct: 224 RGLDRTALTRALIEALGVDIHDVDVVLVGTLGREGEVGLGLGAAEVSGGSVVGAGGFFGG 283

Query: 116 VEGTEPNAAFLAGITDLGGVSAPRPLTNATEMKIFTIVV 147
           VEG EP+ A LA + DLGGV APRPL ++ EM +  + V
Sbjct: 284 VEGPEPDPALLAWVPDLGGVPAPRPLPHSPEMHLLHVAV 322

[Close]

BLAST of Cmc01g0006471 vs. ExPASy TrEMBL
Match: A0A445BBL8 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A10g051117 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 8.4e-08
Identity = 52/123 (42.28%), Postives = 64/123 (52.03%), Query Frame = 0


Query: 47  GGFFMAGGGRGVDGAARARTLVDLVRRNVDQLV-------RRREVGFSLSATKLTGGSVV 106
           GG  +A      DGAA A   V  V  N D +V       R+ EVG SL AT+L+ G VV
Sbjct: 52  GGVGVAVPAGRFDGAALAGAAV--VVLNDDDVVIVVVVGIRKGEVGLSLWATELSSGGVV 111

Query: 107 STCRLLGGVEGTEPNAAFLAGITDLGGVSAPRPLTNATEMKIFTIVVGKRRKVVGGGFFL 163
            T  +LGGVEG EPNAA LA I+DL  V +P PL N  +M +F         + G     
Sbjct: 112 CTRCVLGGVEGAEPNAALLAWISDLSSVPSPWPLPNTPKMYLFNAGATFAVNLNGSRLIP 171

[Close]

BLAST of Cmc01g0006471 vs. ExPASy TrEMBL
Match: A0A445BBK6 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A10g051117 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 8.4e-08
Identity = 52/123 (42.28%), Postives = 64/123 (52.03%), Query Frame = 0


Query: 47  GGFFMAGGGRGVDGAARARTLVDLVRRNVDQLV-------RRREVGFSLSATKLTGGSVV 106
           GG  +A      DGAA A   V  V  N D +V       R+ EVG SL AT+L+ G VV
Sbjct: 52  GGVGVAVPAGRFDGAALAGAAV--VVLNDDDVVIVVVVGIRKGEVGLSLWATELSSGGVV 111

Query: 107 STCRLLGGVEGTEPNAAFLAGITDLGGVSAPRPLTNATEMKIFTIVVGKRRKVVGGGFFL 163
            T  +LGGVEG EPNAA LA I+DL  V +P PL N  +M +F         + G     
Sbjct: 112 CTRCVLGGVEGAEPNAALLAWISDLSSVPSPWPLPNTPKMYLFNAGATFAVNLNGSRLIP 171

[Close]

BLAST of Cmc01g0006471 vs. ExPASy TrEMBL
Match: A0A444C4E4 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00057966 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.2e-07
Identity = 46/111 (41.44%), Postives = 59/111 (53.15%), Query Frame = 0


Query: 44  LRGGGFFMAGGGRGVDGAARARTLVDLVRRNVDQLVRRREVGFSLSATKLTGGSVVSTCR 103
           LR G  + A    G  G   AR    +    VD  VR  EVG  L + +L GG VV    
Sbjct: 249 LRTGRLYGAALAAGASGTPSARGDAAVAGAGVDAGVRPWEVGLGLGSAELAGGGVVGPRG 308

Query: 104 LLGGVEGTEPNAAFLAGITDLGGVSAPRPLTNATEMKIF----TIVVGKRR 151
           LL  VE  EP+AA LAG+T+L  V+ PRPL +++EM +     T VVG+ R
Sbjct: 309 LLRRVESPEPDAALLAGVTNLRCVTPPRPLPHSSEMLLLPFSTTHVVGRLR 359

The following BLAST results are available for this feature:

BLAST of Cmc01g0006471 vs. NCBI nr


Match Name	E-value	Identity	Description
OWM81423.1	4.9e-10	47.42	hypothetical protein CDL15_Pgr007461 [Punica granatum]	[more]
PON37874.1	5.4e-09	42.42	hypothetical protein PanWU01x14_316950 [Parasponia andersonii]	[more]
KAG2397165.1	3.5e-08	38.89	uncharacterized protein HKW66_Vig0145990 [Vigna angularis]	[more]
RYR36059.1	1.7e-07	42.28	hypothetical protein Ahy_A10g051117 isoform B [Arachis hypogaea]	[more]
RYR36058.1	1.7e-07	42.28	hypothetical protein Ahy_A10g051117 isoform A [Arachis hypogaea]	[more]

BLAST of Cmc01g0006471 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc01g0006471 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A218X905	2.3e-10	47.42	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr007461 PE=4 SV=1	[more]
A0A2P5AMW1	2.6e-09	42.42	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_316950 PE...	[more]
A0A445BBL8	8.4e-08	42.28	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A10g051117 PE=4 SV=1	[more]
A0A445BBK6	8.4e-08	42.28	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A10g051117 PE=4 SV=1	[more]
A0A444C4E4	3.2e-07	41.44	Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00057966 PE=4 SV=1	[more]

BLAST of Cmc01g0006471 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0006471.1	Cmc01g0006471.1	mRNA