Cmc01g0003991 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0003991
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Late embryogenesis abundant protein
Location	CMiso1.1chr01: 765247 .. 766716 (-)
RNA-Seq Expression	Cmc01g0003991
Synteny	Cmc01g0003991

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCTTTTTGCCTTTTCATAATTTCCCTTCCAAATTATTTAGTTCATAATTATATGTCAAGAACTCGTATCCCTCTCCAAGCAAATCCATTGTTTCTTAGGTAAAACTAATCTTCCCTCTTTTCCTCGGTTTGATTCCGTTATTCTTATATATGTAGCGTTCATCATCTCTTAATCGTGGGTATATGTCTAAATCAATTAAGAGTCGGTTTAGATTAACTTTATATTATTTAAAATAGGTTAACTATAGATTCGGTCCAAACACGGATTAAACTATAATAACGTACGTGCTACACAAACTTTGTCTTGGTTGATCTAATAAACATCCATTTTATAAGAGGGAGTGGTTGTGGAATTAGAAAGTCTATATGAAAAAAAGAAAGTGGTTGTGGAAAAGAAAAAAGTAGTGTATGAGAAAGTGGTTGGAAAAAGAAAGTGGATGAGAAAAAAGTTCAACTTTTTTTTCCCTTCTTTGCTGCTTCTTTTTTAAACATAGTTCTCATTTCACCATTTCAAGTATGATTGGGTTATTTTTTATTTTACTCATAGTGCTTTTGGGGATTACTAAAAGGGAATTTTTTGTTGGGATGAAAGTTTAGTTTCCACTCAAAATTGATTTTAAGAGTTGAAAATAGTGTTTTATGAAAAAGTATAGTATGAGGTTTCAGCTTAAGTGCTTCACAAAAAAAGAAAAAAAGAAAAAAAAAAGAGAGGCATTTTTCAATTTAAATTAAATTAATTAGCATGCAATTAATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATATGTTGAATTGAAAAAAAATTGTAAATATAATAAATTTATTATCGAGGGGCATTTTCAAATGTAACAAAATTTCAAATCCATCTAATTGGTGATATTGATATACATGAATGGATAAAAGGATATCTATCATCAATAGAATTTTGAATGACCCACGGATGAATTATATGACAGGAAAATGAAGCAATTGAAACGGCAATTCAGGAGCCTTGTAATTGATTCCACAAGCCAACAAGTCCTAAATAAAAAAGATGATGAGACAGAAACCAAGTCATTGCCCTATAACTCTTCCACTTGGGTGCCTCATCCTCGCACTGGAATTTACTTCCCTCAAGGTCATGAGTGGGTCATGAAGGACATCCCCGAGAATGCAGCTTCCTTCTCTCGACTTTGTTGGTTTCGGGATTCTGATGATGTCGACGACTTGAACCATGAAAACAATACCTCTTCGAGGTCTTGATTTGCCTTTGTTTTTAGGGGTCGGGATTGAGCCTTATTAGGAAAGAAGGTTGTCAATGGAACAATGAAAACGATGTATTAATGGCTTGACAACGTATTGCTTGTGAGCTTTTGTTGATAAGAGAGACCCAAATTGACATTGGAATAATGTAAATTAGTTTACTACATATAGGTAAACTATCGAACAATAAAATGA

mRNA sequence

CTTCTTTTTGCCTTTTCATAATTTCCCTTCCAAATTATTTAGTTCATAATTATATGTCAAGAACTCGTATCCCTCTCCAAGCAAATCCATTGTTTCTTAGGAAAATGAAGCAATTGAAACGGCAATTCAGGAGCCTTGTAATTGATTCCACAAGCCAACAAGTCCTAAATAAAAAAGATGATGAGACAGAAACCAAGTCATTGCCCTATAACTCTTCCACTTGGGTGCCTCATCCTCGCACTGGAATTTACTTCCCTCAAGGTCATGAGTGGGTCATGAAGGACATCCCCGAGAATGCAGCTTCCTTCTCTCGACTTTGTTGGTTTCGGGATTCTGATGATGTCGACGACTTGAACCATGAAAACAATACCTCTTCGAGGTCTTGATTTGCCTTTGTTTTTAGGGGTCGGGATTGAGCCTTATTAGGAAAGAAGGTTGTCAATGGAACAATGAAAACGATGTATTAATGGCTTGACAACGTATTGCTTGTGAGCTTTTGTTGATAAGAGAGACCCAAATTGACATTGGAATAATGTAAATTAGTTTACTACATATAGGTAAACTATCGAACAATAAAATGA

Coding sequence (CDS)

ATGTCAAGAACTCGTATCCCTCTCCAAGCAAATCCATTGTTTCTTAGGAAAATGAAGCAATTGAAACGGCAATTCAGGAGCCTTGTAATTGATTCCACAAGCCAACAAGTCCTAAATAAAAAAGATGATGAGACAGAAACCAAGTCATTGCCCTATAACTCTTCCACTTGGGTGCCTCATCCTCGCACTGGAATTTACTTCCCTCAAGGTCATGAGTGGGTCATGAAGGACATCCCCGAGAATGCAGCTTCCTTCTCTCGACTTTGTTGGTTTCGGGATTCTGATGATGTCGACGACTTGAACCATGAAAACAATACCTCTTCGAGGTCTTGA

Protein sequence

MSRTRIPLQANPLFLRKMKQLKRQFRSLVIDSTSQQVLNKKDDETETKSLPYNSSTWVPHPRTGIYFPQGHEWVMKDIPENAASFSRLCWFRDSDDVDDLNHENNTSSRS

Homology

[Close]

BLAST of Cmc01g0003991 vs. NCBI nr
Match: XP_008455025.1 (PREDICTED: uncharacterized protein LOC103495298 [Cucumis melo])

HSP 1 Score: 226.9 bits (577), Expect = 8.7e-56
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MSRTRIPLQANPLFLRKMKQLKRQFRSLVIDSTSQQVLNKKDDETETKSLPYNSSTWVPH 60
           MSRTRIPLQANPLFLRKMKQLKRQFRSLVIDSTSQQVLNKKDDETETKSLPYNSSTWVPH
Sbjct: 1   MSRTRIPLQANPLFLRKMKQLKRQFRSLVIDSTSQQVLNKKDDETETKSLPYNSSTWVPH 60

Query: 61  PRTGIYFPQGHEWVMKDIPENAASFSRLCWFRDSDDVDDLNHENNTSSRS 111
           PRTGIYFPQGHEWVMKDIPENAASFSRLCWFRDSDDVDDLNHENNTSSRS
Sbjct: 61  PRTGIYFPQGHEWVMKDIPENAASFSRLCWFRDSDDVDDLNHENNTSSRS 110

[Close]

BLAST of Cmc01g0003991 vs. NCBI nr
Match: XP_011658881.1 (uncharacterized protein LOC105436102 [Cucumis sativus] >KAE8645844.1 hypothetical protein Csa_017261 [Cucumis sativus])

HSP 1 Score: 203.0 bits (515), Expect = 1.3e-48
Identity = 98/110 (89.09%), Postives = 102/110 (92.73%), Query Frame = 0


Query: 1   MSRTRIPLQANPLFLRKMKQLKRQFRSLVIDSTSQQVLNKKDDETETKSLPYNSSTWVPH 60
           M RTR+PLQANPLFLRKMKQLK QFR LVIDSTSQQ LNKKDDETET+SLPYNSSTWVPH
Sbjct: 1   MGRTRMPLQANPLFLRKMKQLKWQFRGLVIDSTSQQALNKKDDETETESLPYNSSTWVPH 60

Query: 61  PRTGIYFPQGHEWVMKDIPENAASFSRLCWFRDSDDVDDLNHENNTSSRS 111
           PRTGIYFPQGHEWVMKDIPENAASF RLCWFRDSDDVDDLN + +TSS S
Sbjct: 61  PRTGIYFPQGHEWVMKDIPENAASFPRLCWFRDSDDVDDLNPDKDTSSTS 110

[Close]

BLAST of Cmc01g0003991 vs. NCBI nr
Match: KAA0031357.1 (uncharacterized protein E6C27_scaffold139G001120 [Cucumis melo var. makuwa] >TYK06809.1 uncharacterized protein E5676_scaffold13G001120 [Cucumis melo var. makuwa])

HSP 1 Score: 195.3 bits (495), Expect = 2.8e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 18  MKQLKRQFRSLVIDSTSQQVLNKKDDETETKSLPYNSSTWVPHPRTGIYFPQGHEWVMKD 77
           MKQLKRQFRSLVIDSTSQQVLNKKDDETETKSLPYNSSTWVPHPRTGIYFPQGHEWVMKD
Sbjct: 1   MKQLKRQFRSLVIDSTSQQVLNKKDDETETKSLPYNSSTWVPHPRTGIYFPQGHEWVMKD 60

Query: 78  IPENAASFSRLCWFRDSDDVDDLNHENNTSSRS 111
           IPENAASFSRLCWFRDSDDVDDLNHENNTSSRS
Sbjct: 61  IPENAASFSRLCWFRDSDDVDDLNHENNTSSRS 93

[Close]

BLAST of Cmc01g0003991 vs. NCBI nr
Match: XP_038887565.1 (uncharacterized protein LOC120077680 [Benincasa hispida])

HSP 1 Score: 173.7 bits (439), Expect = 8.7e-40
Identity = 82/109 (75.23%), Postives = 95/109 (87.16%), Query Frame = 0


Query: 1   MSRTRIPLQANPLFLRKMKQLKRQFRSLVIDSTSQQVLNKKDDETETKSLPYNSSTWVPH 60
           M+RT + +QAN LFLRKM+QL+RQF S VI+S  QQ  N+K+DETET+SL YNSSTWVPH
Sbjct: 1   MARTCMAVQANALFLRKMRQLRRQFSSFVIESRGQQAPNQKEDETETESLSYNSSTWVPH 60

Query: 61  PRTGIYFPQGHEWVMKDIPENAASFSRLCWFRDSDDVDDLNHENNTSSR 110
           PRTGIYFPQGHEWVMKDIPENAASFS+LCWFRDSD +DDLN +N+ S R
Sbjct: 61  PRTGIYFPQGHEWVMKDIPENAASFSQLCWFRDSDGIDDLNLDNDNSPR 109

[Close]

BLAST of Cmc01g0003991 vs. NCBI nr
Match: XP_022148740.1 (uncharacterized protein LOC111017332 [Momordica charantia])

HSP 1 Score: 140.2 bits (352), Expect = 1.1e-29
Identity = 65/100 (65.00%), Postives = 82/100 (82.00%), Query Frame = 0


Query: 8   LQANPLFLRKMKQLKRQFRSLVIDSTSQQVLNKKDDETETKSLPYNSSTWVPHPRTGIYF 67
           ++AN + LR+MKQL+RQF S  ++S +++   +++D  ET+  PYNSSTWVPHPRTGIYF
Sbjct: 49  VKANAILLRRMKQLRRQFSSFAMESKAKEEALQEED-IETEPWPYNSSTWVPHPRTGIYF 108

Query: 68  PQGHEWVMKDIPENAASFSRLCWFRDSDDVDDLNHENNTS 108
           PQGHEWVMKD+PENAASFSR+CWFRDSD VDD N + N S
Sbjct: 109 PQGHEWVMKDVPENAASFSRVCWFRDSDGVDDPNPDQNPS 147

[Close]

BLAST of Cmc01g0003991 vs. ExPASy TrEMBL
Match: A0A1S3C0N8 (uncharacterized protein LOC103495298 OS=Cucumis melo OX=3656 GN=LOC103495298 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 4.2e-56
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MSRTRIPLQANPLFLRKMKQLKRQFRSLVIDSTSQQVLNKKDDETETKSLPYNSSTWVPH 60
           MSRTRIPLQANPLFLRKMKQLKRQFRSLVIDSTSQQVLNKKDDETETKSLPYNSSTWVPH
Sbjct: 1   MSRTRIPLQANPLFLRKMKQLKRQFRSLVIDSTSQQVLNKKDDETETKSLPYNSSTWVPH 60

Query: 61  PRTGIYFPQGHEWVMKDIPENAASFSRLCWFRDSDDVDDLNHENNTSSRS 111
           PRTGIYFPQGHEWVMKDIPENAASFSRLCWFRDSDDVDDLNHENNTSSRS
Sbjct: 61  PRTGIYFPQGHEWVMKDIPENAASFSRLCWFRDSDDVDDLNHENNTSSRS 110

[Close]

BLAST of Cmc01g0003991 vs. ExPASy TrEMBL
Match: A0A0A0K7S0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071500 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 7.9e-47
Identity = 94/105 (89.52%), Postives = 98/105 (93.33%), Query Frame = 0


Query: 6   IPLQANPLFLRKMKQLKRQFRSLVIDSTSQQVLNKKDDETETKSLPYNSSTWVPHPRTGI 65
           +PLQANPLFLRKMKQLK QFR LVIDSTSQQ LNKKDDETET+SLPYNSSTWVPHPRTGI
Sbjct: 1   MPLQANPLFLRKMKQLKWQFRGLVIDSTSQQALNKKDDETETESLPYNSSTWVPHPRTGI 60

Query: 66  YFPQGHEWVMKDIPENAASFSRLCWFRDSDDVDDLNHENNTSSRS 111
           YFPQGHEWVMKDIPENAASF RLCWFRDSDDVDDLN + +TSS S
Sbjct: 61  YFPQGHEWVMKDIPENAASFPRLCWFRDSDDVDDLNPDKDTSSTS 105

[Close]

BLAST of Cmc01g0003991 vs. ExPASy TrEMBL
Match: A0A5D3C8X8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001120 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.4e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 18  MKQLKRQFRSLVIDSTSQQVLNKKDDETETKSLPYNSSTWVPHPRTGIYFPQGHEWVMKD 77
           MKQLKRQFRSLVIDSTSQQVLNKKDDETETKSLPYNSSTWVPHPRTGIYFPQGHEWVMKD
Sbjct: 1   MKQLKRQFRSLVIDSTSQQVLNKKDDETETKSLPYNSSTWVPHPRTGIYFPQGHEWVMKD 60

Query: 78  IPENAASFSRLCWFRDSDDVDDLNHENNTSSRS 111
           IPENAASFSRLCWFRDSDDVDDLNHENNTSSRS
Sbjct: 61  IPENAASFSRLCWFRDSDDVDDLNHENNTSSRS 93

[Close]

BLAST of Cmc01g0003991 vs. ExPASy TrEMBL
Match: A0A6J1D3R9 (uncharacterized protein LOC111017332 OS=Momordica charantia OX=3673 GN=LOC111017332 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 5.2e-30
Identity = 65/100 (65.00%), Postives = 82/100 (82.00%), Query Frame = 0


Query: 8   LQANPLFLRKMKQLKRQFRSLVIDSTSQQVLNKKDDETETKSLPYNSSTWVPHPRTGIYF 67
           ++AN + LR+MKQL+RQF S  ++S +++   +++D  ET+  PYNSSTWVPHPRTGIYF
Sbjct: 49  VKANAILLRRMKQLRRQFSSFAMESKAKEEALQEED-IETEPWPYNSSTWVPHPRTGIYF 108

Query: 68  PQGHEWVMKDIPENAASFSRLCWFRDSDDVDDLNHENNTS 108
           PQGHEWVMKD+PENAASFSR+CWFRDSD VDD N + N S
Sbjct: 109 PQGHEWVMKDVPENAASFSRVCWFRDSDGVDDPNPDQNPS 147

[Close]

BLAST of Cmc01g0003991 vs. ExPASy TrEMBL
Match: A0A6J1JN70 (uncharacterized protein LOC111486209 OS=Cucurbita maxima OX=3661 GN=LOC111486209 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.1e-27
Identity = 68/107 (63.55%), Postives = 80/107 (74.77%), Query Frame = 0


Query: 1   MSRTRIPLQANPLFLRKMKQLKRQFRSLVIDSTSQQVLNKKDDETETKSLPYNSSTWVPH 60
           M+RT +  QAN L  RK+KQL+RQF SL   S ++       +ETET+ L YNSSTWVPH
Sbjct: 1   MARTSV--QANALLFRKVKQLRRQFSSLANSSHNK-------EETETEPLSYNSSTWVPH 60

Query: 61  PRTGIYFPQGHEWVMKDIPENAASFSRLCWFRDSDDVDDLNHENNTS 108
           PRTGIYFPQGHEWVMKD+PENAASFS + WFRD D VDDLN + + S
Sbjct: 61  PRTGIYFPQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPDTHPS 98

[Close]

BLAST of Cmc01g0003991 vs. TAIR 10
Match: AT3G19550.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-10
Identity = 43/108 (39.81%), Postives = 53/108 (49.07%), Query Frame = 0


Query: 1   MSRTRIPLQANPLFLRKMKQLKRQ--FRSLVIDSTSQQVLNKKDDETETKSLPYNSSTWV 60
           M RT I  +A  L LR  KQ + +    S    S    V   +D             +WV
Sbjct: 1   MGRTGI-AKAPKLLLRSWKQFQGRAGISSKAAKSNPMIVDYFEDISDHNLKFSGEEESWV 60

Query: 61  PHPRTGIYFPQGHEWVMKDIPENAASFSRLCWFRDSDDVD----DLNH 103
           PHPRTGI+FP G E VM+D+P  AASF    W R+ D VD    DL+H
Sbjct: 61  PHPRTGIFFPPGQESVMEDVPNGAASFDMTFWLRNVDGVDKPDPDLHH 107

[Close]

BLAST of Cmc01g0003991 vs. TAIR 10
Match: AT1G73120.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; EXPRESSED IN: root, cultured cell; Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.9 bits (102), Expect = 9.7e-05
Identity = 16/26 (61.54%), Postives = 22/26 (84.62%), Query Frame = 0


Query: 54 SSTWVPHPRTGIYFPQGHEWVMKDIP 80
          +S+WVPH  TGIY+P+G E VM+D+P
Sbjct: 68 ASSWVPHEGTGIYYPKGQEKVMQDVP 93

The following BLAST results are available for this feature:

BLAST of Cmc01g0003991 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455025.1	8.7e-56	100.00	PREDICTED: uncharacterized protein LOC103495298 [Cucumis melo]	[more]
XP_011658881.1	1.3e-48	89.09	uncharacterized protein LOC105436102 [Cucumis sativus] >KAE8645844.1 hypothetica...	[more]
KAA0031357.1	2.8e-46	100.00	uncharacterized protein E6C27_scaffold139G001120 [Cucumis melo var. makuwa] >TYK...	[more]
XP_038887565.1	8.7e-40	75.23	uncharacterized protein LOC120077680 [Benincasa hispida]	[more]
XP_022148740.1	1.1e-29	65.00	uncharacterized protein LOC111017332 [Momordica charantia]	[more]

BLAST of Cmc01g0003991 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc01g0003991 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C0N8	4.2e-56	100.00	uncharacterized protein LOC103495298 OS=Cucumis melo OX=3656 GN=LOC103495298 PE=...	[more]
A0A0A0K7S0	7.9e-47	89.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071500 PE=4 SV=1	[more]
A0A5D3C8X8	1.4e-46	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1D3R9	5.2e-30	65.00	uncharacterized protein LOC111017332 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A6J1JN70	1.1e-27	63.55	uncharacterized protein LOC111486209 OS=Cucurbita maxima OX=3661 GN=LOC111486209...	[more]

BLAST of Cmc01g0003991 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19550.1	1.2e-10	39.81	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G73120.1	9.7e-05	61.54	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004926	Late embryogenesis abundant protein, LEA_3 subgroup	PFAM	PF03242	LEA_3	coord: 37..71 e-value: 9.0E-5 score: 23.1
None	No IPR available	PANTHER	PTHR35109	GLUTAMATE RACEMASE	coord: 10..104
None	No IPR available	PANTHER	PTHR35109:SF1	GLUTAMATE RACEMASE	coord: 10..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0003991.1	Cmc01g0003991.1	mRNA