Cmc00g0001861 (gene) Melon (Charmono) v1.1

Overview
NameCmc00g0001861
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description30S ribosomal protein S2, chloroplastic
LocationCMiso1.1chr00: 2214201 .. 2214989 (+)
RNA-Seq ExpressionCmc00g0001861
SyntenyCmc00g0001861
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAACAATTATTTATTTCTATTTCAGCTCGTCTCTTTTTTTAAGAAAAAAAAGCGAGGAAGTGGGGGGAGAAATGACAAGAAGATATTGGAAGATCCATTTGGAAGAGATGATGGAAGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGGAATCCTAGAATGGCACCTTATATCTCTGCAAAACGTAAAGGTATGAATATTAGAAATCTTACTCGAACTGCTCGTTTTTTATCAGAAGCTTGTGATTTCCTTTTTGATGCAGCAACTAGGGGCAAAGAATTCTTAATTGTTGGTACCAAAAATCAAGCAGCGGATTCAGTAGCCCGGGCTGCAACAAGGACTCGGTCTCATTATCTTAATAAAAAATGGCTCGGGGGGGTGTTAACAAATTGGTCTACTACAGAAAGGAGACTGAATAAGTTCAGGGACTTGAGAACGGAACAAAAGACGGGGGGACTCAACCGTCTTCCGAAAAGGGATGCCGCTATGTTGAAGAGACAATTATCTCACTTGCAAACATATCTGGGCGGGATGAAATATATGACGGGGTTACCCGATGTTGTAATAATCGTTGATCAACAAGAAGAATATCGGGCTCTTCAAGAATGTATCACGTTGGGAATTCCAACTATTTGTTTAATTGATACAAATTGTGACCCCGATCTCGCAGATATTTCGATTCCAGCGAATGATGATGCTATAGCTTCAATCCGATTAATTCTTAACAAATTAGTATTTGCAATTTCGGAGGGTCGTTCTAGCTCTATACGAAATTCTTTCTGA

mRNA sequence

ATGGGAACAATTATTTATTTCTATTTCAGCTCGTCTCTTTTTTTAAGAAAAAAAAGCGAGGAAGTGGGGGGAGAAATGACAAGAAGATATTGGAAGATCCATTTGGAAGAGATGATGGAAGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGGAATCCTAGAATGGCACCTTATATCTCTGCAAAACGTAAAGGTATGAATATTAGAAATCTTACTCGAACTGCTCGTTTTTTATCAGAAGCTTGTGATTTCCTTTTTGATGCAGCAACTAGGGGCAAAGAATTCTTAATTGTTGGTACCAAAAATCAAGCAGCGGATTCAGTAGCCCGGGCTGCAACAAGGACTCGGTCTCATTATCTTAATAAAAAATGGCTCGGGGGGGTGTTAACAAATTGGTCTACTACAGAAAGGAGACTGAATAAGTTCAGGGACTTGAGAACGGAACAAAAGACGGGGGGACTCAACCGTCTTCCGAAAAGGGATGCCGCTATGTTGAAGAGACAATTATCTCACTTGCAAACATATCTGGGCGGGATGAAATATATGACGGGGTTACCCGATGTTGTAATAATCGTTGATCAACAAGAAGAATATCGGGCTCTTCAAGAATGTATCACGTTGGGAATTCCAACTATTTGTTTAATTGATACAAATTGTGACCCCGATCTCGCAGATATTTCGATTCCAGCGAATGATGATGCTATAGCTTCAATCCGATTAATTCTTAACAAATTAGTATTTGCAATTTCGGAGGGTCGTTCTAGCTCTATACGAAATTCTTTCTGA

Coding sequence (CDS)

ATGGGAACAATTATTTATTTCTATTTCAGCTCGTCTCTTTTTTTAAGAAAAAAAAGCGAGGAAGTGGGGGGAGAAATGACAAGAAGATATTGGAAGATCCATTTGGAAGAGATGATGGAAGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGGAATCCTAGAATGGCACCTTATATCTCTGCAAAACGTAAAGGTATGAATATTAGAAATCTTACTCGAACTGCTCGTTTTTTATCAGAAGCTTGTGATTTCCTTTTTGATGCAGCAACTAGGGGCAAAGAATTCTTAATTGTTGGTACCAAAAATCAAGCAGCGGATTCAGTAGCCCGGGCTGCAACAAGGACTCGGTCTCATTATCTTAATAAAAAATGGCTCGGGGGGGTGTTAACAAATTGGTCTACTACAGAAAGGAGACTGAATAAGTTCAGGGACTTGAGAACGGAACAAAAGACGGGGGGACTCAACCGTCTTCCGAAAAGGGATGCCGCTATGTTGAAGAGACAATTATCTCACTTGCAAACATATCTGGGCGGGATGAAATATATGACGGGGTTACCCGATGTTGTAATAATCGTTGATCAACAAGAAGAATATCGGGCTCTTCAAGAATGTATCACGTTGGGAATTCCAACTATTTGTTTAATTGATACAAATTGTGACCCCGATCTCGCAGATATTTCGATTCCAGCGAATGATGATGCTATAGCTTCAATCCGATTAATTCTTAACAAATTAGTATTTGCAATTTCGGAGGGTCGTTCTAGCTCTATACGAAATTCTTTCTGA

Protein sequence

MGTIIYFYFSSSLFLRKKSEEVGGEMTRRYWKIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGMNIRNLTRTARFLSEACDFLFDAATRGKEFLIVGTKNQAADSVARAATRTRSHYLNKKWLGGVLTNWSTTERRLNKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGMKYMTGLPDVVIIVDQQEEYRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNSF
Homology
[Close]
BLAST of Cmc00g0001861 vs. NCBI nr
Match: QJF46372.1 (ribosomal protein S2 [Cucumis melo])

HSP 1 Score: 493.0 bits (1268), Expect = 1.5e-135
Identity = 244/261 (93.49%), Postives = 255/261 (97.70%), Query Frame = 0 

Query: 1   MGTIIYFYFSSSLFLRKKSEEVGGEMTRRYWKIHLEEMMEAGVHFGHGTRKWNPRMAPYI 60
           MGTIIYFYFSSSLFLRKKSEEVGGEMTRRYW IHL EMMEAGVHFGHGTRKWNPRMAPYI
Sbjct: 1   MGTIIYFYFSSSLFLRKKSEEVGGEMTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYI 60

Query: 61  SAKRKGMNIRNLTRTARFLSEACDFLFDAATRGKEFLIVGTKNQAADSVARAATRTRSHY 120
           SAKRKG++I NLT+TARFLSEACD +FDAATRGK+FLIVGTKN+AADSVARAATRTR HY
Sbjct: 61  SAKRKGIHIINLTQTARFLSEACDLVFDAATRGKQFLIVGTKNKAADSVARAATRTRCHY 120

Query: 121 LNKKWLGGVLTNWSTTERRLNKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGM 180
           +NKKWLGG+LTNWSTTE RL+KFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGG+
Sbjct: 121 VNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGI 180

Query: 181 KYMTGLPDVVIIVDQQEEYRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIR 240
           KYMTGLPDVVIIVDQQEEYRALQECITLGIPTICLIDTNCDPDLADI+IPANDDAIASIR
Sbjct: 181 KYMTGLPDVVIIVDQQEEYRALQECITLGIPTICLIDTNCDPDLADIAIPANDDAIASIR 240

Query: 241 LILNKLVFAISEGRSSSIRNS 262
           LILNKLVFAISEGRSSSIRNS
Sbjct: 241 LILNKLVFAISEGRSSSIRNS 261

[Close]
BLAST of Cmc00g0001861 vs. NCBI nr
Match: QWW90452.1 (ribosomal protein S2 [Sorbus alnifolia])

HSP 1 Score: 450.7 bits (1158), Expect = 8.8e-123
Identity = 228/267 (85.39%), Postives = 244/267 (91.39%), Query Frame = 0 

Query: 1   MGTIIYFYF---SSSLFLRKKS---EEVGGEMTRRYWKIHLEEMMEAGVHFGHGTRKWNP 60
           MGTIIYFYF   SS  FLRKK    +EV GEMTRRYW I+LEEMMEAGVHFGHGTRKWNP
Sbjct: 19  MGTIIYFYFQGTSSHFFLRKKKKRRKEVWGEMTRRYWNINLEEMMEAGVHFGHGTRKWNP 78

Query: 61  RMAPYISAKRKGMNIRNLTRTARFLSEACDFLFDAATRGKEFLIVGTKNQAADSVARAAT 120
           RMAPYISAKRKG++I NLTRTARFLSEACD +FDAA+RGK+FLIVGTKN+AADSVARAA 
Sbjct: 79  RMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAAI 138

Query: 121 RTRSHYLNKKWLGGVLTNWSTTERRLNKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQ 180
           + R HY+NKKWLGG+LTNW TTE RL+KFRDLRTEQKTG LNRLPKRDAA+LKRQL HLQ
Sbjct: 139 KARCHYVNKKWLGGMLTNWYTTETRLHKFRDLRTEQKTGRLNRLPKRDAAVLKRQLFHLQ 198

Query: 181 TYLGGMKYMTGLPDVVIIVDQQEEYRALQECITLGIPTICLIDTNCDPDLADISIPANDD 240
           TYLGG+KYMTGLPD+VIIVDQQEEY AL+ECITLGIPTICLIDTNCDPDLADISIPANDD
Sbjct: 199 TYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDTNCDPDLADISIPANDD 258

Query: 241 AIASIRLILNKLVFAISEGRSSSIRNS 262
           AIASIRLILNKLVFAI EGRSS IRNS
Sbjct: 259 AIASIRLILNKLVFAICEGRSSYIRNS 285

[Close]
BLAST of Cmc00g0001861 vs. NCBI nr
Match: AXR94244.1 (ribosomal protein S2 [Elaeagnus loureirii] >AXR94328.1 ribosomal protein S2 [Elaeagnus loureirii] >AXR94412.1 ribosomal protein S2 [Elaeagnus loureirii] >AXR94496.1 ribosomal protein S2 [Elaeagnus loureirii])

HSP 1 Score: 448.4 bits (1152), Expect = 4.4e-122
Identity = 225/265 (84.91%), Postives = 243/265 (91.70%), Query Frame = 0 

Query: 1   MGTIIYFYF--SSSLFL--RKKSEEVGGEMTRRYWKIHLEEMMEAGVHFGHGTRKWNPRM 60
           MGTIIYFY+  SSSLF   +KK EE+ GEMTRRYW I+LEEMMEAG+HFGHGTRKWNPRM
Sbjct: 14  MGTIIYFYYQSSSSLFFFGKKKREEIWGEMTRRYWNINLEEMMEAGIHFGHGTRKWNPRM 73

Query: 61  APYISAKRKGMNIRNLTRTARFLSEACDFLFDAATRGKEFLIVGTKNQAADSVARAATRT 120
           APYISAKRKG++I NLTRTARFLSEACD +FDAA+RGK+FLIVGTKN+AADSVARAA + 
Sbjct: 74  APYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAAIKA 133

Query: 121 RSHYLNKKWLGGVLTNWSTTERRLNKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTY 180
           R HY+NKKWLGG+LTNW TTE RL KFRDLR EQKTG LNRLPKRDAA+LKRQLSHLQTY
Sbjct: 134 RCHYVNKKWLGGMLTNWYTTETRLQKFRDLRMEQKTGRLNRLPKRDAAVLKRQLSHLQTY 193

Query: 181 LGGMKYMTGLPDVVIIVDQQEEYRALQECITLGIPTICLIDTNCDPDLADISIPANDDAI 240
           LGG+KYMTGLPD+VIIVDQQEEY AL+ECITLGIPTICLIDTNC PDLADISIPANDDAI
Sbjct: 194 LGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDTNCHPDLADISIPANDDAI 253

Query: 241 ASIRLILNKLVFAISEGRSSSIRNS 262
           ASIRLILNKLVFAI EGRSS IRNS
Sbjct: 254 ASIRLILNKLVFAICEGRSSYIRNS 278

[Close]
BLAST of Cmc00g0001861 vs. NCBI nr
Match: YP_009004033.1 (ribosomal protein S2 [Cucumis hystrix] >YP_009346474.1 ribosomal protein S2 [Cucumis x hytivus] >YP_247588.1 ribosomal protein S2 [Cucumis sativus] >Q4VZP4.1 RecName: Full=30S ribosomal protein S2, chloroplastic [Cucumis sativus] >ALF03290.1 ribosomal protein S2 [Cucumis sativus var. hardwickii] >AVE15320.1 ribosomal protein S2 [Cucumis sativus var. sativus] >AAZ94640.1 ribosomal protein S2 [Cucumis sativus] >ABI97406.1 ribosomal protein S2 [Cucumis sativus] >ABI98734.1 ribosomal protein S2 [Cucumis sativus])

HSP 1 Score: 447.6 bits (1150), Expect = 7.5e-122
Identity = 220/236 (93.22%), Postives = 230/236 (97.46%), Query Frame = 0 

Query: 26  MTRRYWKIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGMNIRNLTRTARFLSEACDF 85
           MTRRYW IHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKG++I NLTRTARFLSEACD 
Sbjct: 1   MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60

Query: 86  LFDAATRGKEFLIVGTKNQAADSVARAATRTRSHYLNKKWLGGVLTNWSTTERRLNKFRD 145
           +FDAATRGK+FLIVGTKN+AADSVARAATRTR HY+NKKWLGG+LTNWSTTE RL+KFRD
Sbjct: 61  VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRD 120

Query: 146 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGMKYMTGLPDVVIIVDQQEEYRALQEC 205
           LRTEQKTGGLNRLPKRDAAM KRQLSHLQTYLGG+KYMTGLPD+VIIVDQQEEYRALQEC
Sbjct: 121 LRTEQKTGGLNRLPKRDAAMFKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC 180

Query: 206 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 262
           ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS
Sbjct: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 236

[Close]
BLAST of Cmc00g0001861 vs. NCBI nr
Match: QHB75952.1 (ribosomal protein S2 [Cucumis melo subsp. melo])

HSP 1 Score: 446.8 bits (1148), Expect = 1.3e-121
Identity = 220/236 (93.22%), Postives = 230/236 (97.46%), Query Frame = 0 

Query: 26  MTRRYWKIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGMNIRNLTRTARFLSEACDF 85
           MTRRYW IHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKG++I NLTRTARFLSEACD 
Sbjct: 1   MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60

Query: 86  LFDAATRGKEFLIVGTKNQAADSVARAATRTRSHYLNKKWLGGVLTNWSTTERRLNKFRD 145
           +FDAATRGK+FLIVGTKN+AADSVARAATRTR HY+NKKWLGG+LTNWSTTE RL+KFRD
Sbjct: 61  VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRD 120

Query: 146 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGMKYMTGLPDVVIIVDQQEEYRALQEC 205
           LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGG+KYMTGLPD+VIIVDQQEEYRALQEC
Sbjct: 121 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC 180

Query: 206 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 262
           ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSS IRNS
Sbjct: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSYIRNS 236

[Close]
BLAST of Cmc00g0001861 vs. ExPASy Swiss-Prot
Match: Q4VZP4 (30S ribosomal protein S2, chloroplastic OS=Cucumis sativus OX=3659 GN=rps2 PE=3 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 9.8e-125
Identity = 220/236 (93.22%), Postives = 230/236 (97.46%), Query Frame = 0 

Query: 26  MTRRYWKIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGMNIRNLTRTARFLSEACDF 85
           MTRRYW IHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKG++I NLTRTARFLSEACD 
Sbjct: 1   MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60

Query: 86  LFDAATRGKEFLIVGTKNQAADSVARAATRTRSHYLNKKWLGGVLTNWSTTERRLNKFRD 145
           +FDAATRGK+FLIVGTKN+AADSVARAATRTR HY+NKKWLGG+LTNWSTTE RL+KFRD
Sbjct: 61  VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRD 120

Query: 146 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGMKYMTGLPDVVIIVDQQEEYRALQEC 205
           LRTEQKTGGLNRLPKRDAAM KRQLSHLQTYLGG+KYMTGLPD+VIIVDQQEEYRALQEC
Sbjct: 121 LRTEQKTGGLNRLPKRDAAMFKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC 180

Query: 206 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 262
           ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS
Sbjct: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 236

[Close]
BLAST of Cmc00g0001861 vs. ExPASy Swiss-Prot
Match: Q49L09 (30S ribosomal protein S2, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rps2 PE=3 SV=1)

HSP 1 Score: 426.0 bits (1094), Expect = 3.0e-118
Identity = 209/235 (88.94%), Postives = 223/235 (94.89%), Query Frame = 0 

Query: 26  MTRRYWKIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGMNIRNLTRTARFLSEACDF 85
           MTRRYW I+LEEMMEAGVHFGHGTRKWNPRMAPYISAKRKG++I NLT+TARFLSEACD 
Sbjct: 1   MTRRYWNINLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHITNLTKTARFLSEACDL 60

Query: 86  LFDAATRGKEFLIVGTKNQAADSVARAATRTRSHYLNKKWLGGVLTNWSTTERRLNKFRD 145
           +FDAA+RGK+FLIVGTKN+AADSVARAA R R HY+NKKWLGG+LTNWSTTE RL+KFRD
Sbjct: 61  VFDAASRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRD 120

Query: 146 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGMKYMTGLPDVVIIVDQQEEYRALQEC 205
           LRTEQK G LNRLPKRDAAMLKRQLSHLQTYLGG+KYMTGLPD+VIIVDQQEEY AL+EC
Sbjct: 121 LRTEQKAGRLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALREC 180

Query: 206 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRN 261
           ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAI EGRSS IRN
Sbjct: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAICEGRSSYIRN 235

[Close]
BLAST of Cmc00g0001861 vs. ExPASy Swiss-Prot
Match: Q0ZJ31 (30S ribosomal protein S2, chloroplastic OS=Vitis vinifera OX=29760 GN=rps2 PE=3 SV=1)

HSP 1 Score: 425.6 bits (1093), Expect = 4.0e-118
Identity = 209/235 (88.94%), Postives = 223/235 (94.89%), Query Frame = 0 

Query: 26  MTRRYWKIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGMNIRNLTRTARFLSEACDF 85
           MTRRYW I+LEEMMEAGVHFGHGTRKWNPRMAPYISAKRKG++I NLTRTARFLSEACD 
Sbjct: 1   MTRRYWNINLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHITNLTRTARFLSEACDL 60

Query: 86  LFDAATRGKEFLIVGTKNQAADSVARAATRTRSHYLNKKWLGGVLTNWSTTERRLNKFRD 145
           +FDAA+RGK+FLIVGTKN+AADSVARAA + R HY+NKKWLGG+ TNWSTTE RL+KFRD
Sbjct: 61  VFDAASRGKQFLIVGTKNKAADSVARAAIKARCHYVNKKWLGGMSTNWSTTETRLHKFRD 120

Query: 146 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGMKYMTGLPDVVIIVDQQEEYRALQEC 205
           LRTEQKTG LNRLPKRDAAMLKRQLSHLQTYLGG+KYMTGLPD+VIIVDQQEEY AL+EC
Sbjct: 121 LRTEQKTGRLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALREC 180

Query: 206 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRN 261
           ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAI EGRSS IRN
Sbjct: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAICEGRSSYIRN 235

[Close]
BLAST of Cmc00g0001861 vs. ExPASy Swiss-Prot
Match: Q0G9N0 (30S ribosomal protein S2, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=rps2 PE=3 SV=1)

HSP 1 Score: 424.5 bits (1090), Expect = 8.9e-118
Identity = 208/235 (88.51%), Postives = 221/235 (94.04%), Query Frame = 0 

Query: 26  MTRRYWKIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGMNIRNLTRTARFLSEACDF 85
           MTRRYW IHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKG++I NLTRTARFLSEACD 
Sbjct: 1   MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHITNLTRTARFLSEACDL 60

Query: 86  LFDAATRGKEFLIVGTKNQAADSVARAATRTRSHYLNKKWLGGVLTNWSTTERRLNKFRD 145
           +FDAA+RGK FL+VGTKN+AADSVA AA R R HY+NKKWLGG+LTNWSTTE RL+KFRD
Sbjct: 61  VFDAASRGKNFLLVGTKNKAADSVASAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRD 120

Query: 146 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGMKYMTGLPDVVIIVDQQEEYRALQEC 205
           LR EQKTG LNRLPKRDAAMLKRQLSHLQTYLGG+KYMTGLPD+VIIVDQQEEY AL+EC
Sbjct: 121 LRAEQKTGKLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALREC 180

Query: 206 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRN 261
           +TLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLV AI EGRSSSIRN
Sbjct: 181 LTLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVSAICEGRSSSIRN 235

[Close]
BLAST of Cmc00g0001861 vs. ExPASy Swiss-Prot
Match: Q1KXW9 (30S ribosomal protein S2, chloroplastic OS=Helianthus annuus OX=4232 GN=rps2 PE=3 SV=1)

HSP 1 Score: 421.0 bits (1081), Expect = 9.8e-117
Identity = 206/235 (87.66%), Postives = 221/235 (94.04%), Query Frame = 0 

Query: 26  MTRRYWKIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGMNIRNLTRTARFLSEACDF 85
           MTRRYW I+LEEMMEAGVHFGHGTRKWNP+MAPYISAKRKG++I NLTRTARFLSEACD 
Sbjct: 1   MTRRYWNINLEEMMEAGVHFGHGTRKWNPKMAPYISAKRKGIHITNLTRTARFLSEACDL 60

Query: 86  LFDAATRGKEFLIVGTKNQAADSVARAATRTRSHYLNKKWLGGVLTNWSTTERRLNKFRD 145
           +FDAA+RGK+FLIVGTKN+ ADSVA AA R R HY+NKKWLGG+LTNWSTTE RL+KFRD
Sbjct: 61  VFDAASRGKQFLIVGTKNKEADSVAWAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRD 120

Query: 146 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGMKYMTGLPDVVIIVDQQEEYRALQEC 205
           LRTEQKTGGL+RLPKRDAAMLKRQLSHLQTYLGG+KYMTGLPD+VIIVDQ EEY ALQEC
Sbjct: 121 LRTEQKTGGLSRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQHEEYTALQEC 180

Query: 206 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRN 261
           ITLGIPTICLIDTNCDPDLADISIPANDDAI+SIRLILNKLVFAI EGRS  IRN
Sbjct: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAISSIRLILNKLVFAICEGRSGYIRN 235

[Close]
BLAST of Cmc00g0001861 vs. ExPASy TrEMBL
Match: A0A6M3W1W6 (30S ribosomal protein S2, chloroplastic OS=Cucumis melo OX=3656 GN=rps2 PE=3 SV=1)

HSP 1 Score: 493.0 bits (1268), Expect = 7.5e-136
Identity = 244/261 (93.49%), Postives = 255/261 (97.70%), Query Frame = 0 

Query: 1   MGTIIYFYFSSSLFLRKKSEEVGGEMTRRYWKIHLEEMMEAGVHFGHGTRKWNPRMAPYI 60
           MGTIIYFYFSSSLFLRKKSEEVGGEMTRRYW IHL EMMEAGVHFGHGTRKWNPRMAPYI
Sbjct: 1   MGTIIYFYFSSSLFLRKKSEEVGGEMTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYI 60

Query: 61  SAKRKGMNIRNLTRTARFLSEACDFLFDAATRGKEFLIVGTKNQAADSVARAATRTRSHY 120
           SAKRKG++I NLT+TARFLSEACD +FDAATRGK+FLIVGTKN+AADSVARAATRTR HY
Sbjct: 61  SAKRKGIHIINLTQTARFLSEACDLVFDAATRGKQFLIVGTKNKAADSVARAATRTRCHY 120

Query: 121 LNKKWLGGVLTNWSTTERRLNKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGM 180
           +NKKWLGG+LTNWSTTE RL+KFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGG+
Sbjct: 121 VNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGI 180

Query: 181 KYMTGLPDVVIIVDQQEEYRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIR 240
           KYMTGLPDVVIIVDQQEEYRALQECITLGIPTICLIDTNCDPDLADI+IPANDDAIASIR
Sbjct: 181 KYMTGLPDVVIIVDQQEEYRALQECITLGIPTICLIDTNCDPDLADIAIPANDDAIASIR 240

Query: 241 LILNKLVFAISEGRSSSIRNS 262
           LILNKLVFAISEGRSSSIRNS
Sbjct: 241 LILNKLVFAISEGRSSSIRNS 261

[Close]
BLAST of Cmc00g0001861 vs. ExPASy TrEMBL
Match: A0A346QMJ3 (30S ribosomal protein S2, chloroplastic OS=Elaeagnus loureirii OX=2184934 GN=rps2 PE=3 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 2.1e-122
Identity = 225/265 (84.91%), Postives = 243/265 (91.70%), Query Frame = 0 

Query: 1   MGTIIYFYF--SSSLFL--RKKSEEVGGEMTRRYWKIHLEEMMEAGVHFGHGTRKWNPRM 60
           MGTIIYFY+  SSSLF   +KK EE+ GEMTRRYW I+LEEMMEAG+HFGHGTRKWNPRM
Sbjct: 14  MGTIIYFYYQSSSSLFFFGKKKREEIWGEMTRRYWNINLEEMMEAGIHFGHGTRKWNPRM 73

Query: 61  APYISAKRKGMNIRNLTRTARFLSEACDFLFDAATRGKEFLIVGTKNQAADSVARAATRT 120
           APYISAKRKG++I NLTRTARFLSEACD +FDAA+RGK+FLIVGTKN+AADSVARAA + 
Sbjct: 74  APYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAAIKA 133

Query: 121 RSHYLNKKWLGGVLTNWSTTERRLNKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTY 180
           R HY+NKKWLGG+LTNW TTE RL KFRDLR EQKTG LNRLPKRDAA+LKRQLSHLQTY
Sbjct: 134 RCHYVNKKWLGGMLTNWYTTETRLQKFRDLRMEQKTGRLNRLPKRDAAVLKRQLSHLQTY 193

Query: 181 LGGMKYMTGLPDVVIIVDQQEEYRALQECITLGIPTICLIDTNCDPDLADISIPANDDAI 240
           LGG+KYMTGLPD+VIIVDQQEEY AL+ECITLGIPTICLIDTNC PDLADISIPANDDAI
Sbjct: 194 LGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDTNCHPDLADISIPANDDAI 253

Query: 241 ASIRLILNKLVFAISEGRSSSIRNS 262
           ASIRLILNKLVFAI EGRSS IRNS
Sbjct: 254 ASIRLILNKLVFAICEGRSSYIRNS 278

[Close]
BLAST of Cmc00g0001861 vs. ExPASy TrEMBL
Match: A0A218KG32 (30S ribosomal protein S2, chloroplastic OS=Cucumis sativus var. hardwickii OX=319220 GN=rps2 PE=3 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 3.6e-122
Identity = 220/236 (93.22%), Postives = 230/236 (97.46%), Query Frame = 0 

Query: 26  MTRRYWKIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGMNIRNLTRTARFLSEACDF 85
           MTRRYW IHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKG++I NLTRTARFLSEACD 
Sbjct: 1   MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60

Query: 86  LFDAATRGKEFLIVGTKNQAADSVARAATRTRSHYLNKKWLGGVLTNWSTTERRLNKFRD 145
           +FDAATRGK+FLIVGTKN+AADSVARAATRTR HY+NKKWLGG+LTNWSTTE RL+KFRD
Sbjct: 61  VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRD 120

Query: 146 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGMKYMTGLPDVVIIVDQQEEYRALQEC 205
           LRTEQKTGGLNRLPKRDAAM KRQLSHLQTYLGG+KYMTGLPD+VIIVDQQEEYRALQEC
Sbjct: 121 LRTEQKTGGLNRLPKRDAAMFKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC 180

Query: 206 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 262
           ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS
Sbjct: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 236

[Close]
BLAST of Cmc00g0001861 vs. ExPASy TrEMBL
Match: A0A1X9Q1S8 (30S ribosomal protein S2, chloroplastic OS=Cucumis sativus OX=3659 GN=rps2 PE=3 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 3.6e-122
Identity = 220/236 (93.22%), Postives = 230/236 (97.46%), Query Frame = 0 

Query: 26  MTRRYWKIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGMNIRNLTRTARFLSEACDF 85
           MTRRYW IHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKG++I NLTRTARFLSEACD 
Sbjct: 1   MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60

Query: 86  LFDAATRGKEFLIVGTKNQAADSVARAATRTRSHYLNKKWLGGVLTNWSTTERRLNKFRD 145
           +FDAATRGK+FLIVGTKN+AADSVARAATRTR HY+NKKWLGG+LTNWSTTE RL+KFRD
Sbjct: 61  VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRD 120

Query: 146 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGMKYMTGLPDVVIIVDQQEEYRALQEC 205
           LRTEQKTGGLNRLPKRDAAM KRQLSHLQTYLGG+KYMTGLPD+VIIVDQQEEYRALQEC
Sbjct: 121 LRTEQKTGGLNRLPKRDAAMFKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC 180

Query: 206 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 262
           ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS
Sbjct: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 236

[Close]
BLAST of Cmc00g0001861 vs. ExPASy TrEMBL
Match: W8E120 (Ribosomal protein S2 OS=Cucumis hystrix OX=396994 GN=rps2 PE=3 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 3.6e-122
Identity = 220/236 (93.22%), Postives = 230/236 (97.46%), Query Frame = 0 

Query: 26  MTRRYWKIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGMNIRNLTRTARFLSEACDF 85
           MTRRYW IHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKG++I NLTRTARFLSEACD 
Sbjct: 1   MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60

Query: 86  LFDAATRGKEFLIVGTKNQAADSVARAATRTRSHYLNKKWLGGVLTNWSTTERRLNKFRD 145
           +FDAATRGK+FLIVGTKN+AADSVARAATRTR HY+NKKWLGG+LTNWSTTE RL+KFRD
Sbjct: 61  VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRD 120

Query: 146 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGMKYMTGLPDVVIIVDQQEEYRALQEC 205
           LRTEQKTGGLNRLPKRDAAM KRQLSHLQTYLGG+KYMTGLPD+VIIVDQQEEYRALQEC
Sbjct: 121 LRTEQKTGGLNRLPKRDAAMFKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC 180

Query: 206 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 262
           ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS
Sbjct: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 236

[Close]
BLAST of Cmc00g0001861 vs. TAIR 10
Match: ATCG00160.1 (ribosomal protein S2 )

HSP 1 Score: 406.0 bits (1042), Expect = 2.3e-113
Identity = 199/236 (84.32%), Postives = 219/236 (92.80%), Query Frame = 0 

Query: 26  MTRRYWKIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGMNIRNLTRTARFLSEACDF 85
           MT+RYW I LEEMM AGVHFGHGTRKWNPRMAPYISAKRKG++I NLTRTARFLSEACD 
Sbjct: 1   MTKRYWNIDLEEMMRAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60

Query: 86  LFDAATRGKEFLIVGTKNQAADSVARAATRTRSHYLNKKWLGGVLTNWSTTERRLNKFRD 145
           +FDAA+RGK+FLIVGTKN+AAD V+RAA R R HY+NKKWLGG+LTNWSTTE+RL+KFRD
Sbjct: 61  VFDAASRGKQFLIVGTKNKAADLVSRAAIRARCHYVNKKWLGGMLTNWSTTEKRLHKFRD 120

Query: 146 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGMKYMTGLPDVVIIVDQQEEYRALQEC 205
           LRTEQKT G NRLPKRDAA+LKRQLS L+TYLGG+KYMTGLPD+VII+DQQEEY AL+EC
Sbjct: 121 LRTEQKTEGFNRLPKRDAAVLKRQLSRLETYLGGIKYMTGLPDIVIILDQQEEYTALREC 180

Query: 206 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 262
           ITLGIPTI LIDTNC+PDLADISIPANDDAIASIR ILNKLVFAI EGRSS I+NS
Sbjct: 181 ITLGIPTISLIDTNCNPDLADISIPANDDAIASIRFILNKLVFAICEGRSSYIQNS 236

The following BLAST results are available for this feature:
BLAST of Cmc00g0001861 vs. NCBI nr
Match NameE-valueIdentityDescription
QJF46372.11.5e-13593.49ribosomal protein S2 [Cucumis melo][more]
QWW90452.18.8e-12385.39ribosomal protein S2 [Sorbus alnifolia][more]
AXR94244.14.4e-12284.91ribosomal protein S2 [Elaeagnus loureirii] >AXR94328.1 ribosomal protein S2 [Ela... [more]
YP_009004033.17.5e-12293.22ribosomal protein S2 [Cucumis hystrix] >YP_009346474.1 ribosomal protein S2 [Cuc... [more]
QHB75952.11.3e-12193.22ribosomal protein S2 [Cucumis melo subsp. melo][more]
BLAST of Cmc00g0001861 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q4VZP49.8e-12593.2230S ribosomal protein S2, chloroplastic OS=Cucumis sativus OX=3659 GN=rps2 PE=3 ... [more]
Q49L093.0e-11888.9430S ribosomal protein S2, chloroplastic OS=Eucalyptus globulus subsp. globulus O... [more]
Q0ZJ314.0e-11888.9430S ribosomal protein S2, chloroplastic OS=Vitis vinifera OX=29760 GN=rps2 PE=3 ... [more]
Q0G9N08.9e-11888.5130S ribosomal protein S2, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=rp... [more]
Q1KXW99.8e-11787.6630S ribosomal protein S2, chloroplastic OS=Helianthus annuus OX=4232 GN=rps2 PE=... [more]
BLAST of Cmc00g0001861 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6M3W1W67.5e-13693.4930S ribosomal protein S2, chloroplastic OS=Cucumis melo OX=3656 GN=rps2 PE=3 SV=... [more]
A0A346QMJ32.1e-12284.9130S ribosomal protein S2, chloroplastic OS=Elaeagnus loureirii OX=2184934 GN=rps... [more]
A0A218KG323.6e-12293.2230S ribosomal protein S2, chloroplastic OS=Cucumis sativus var. hardwickii OX=31... [more]
A0A1X9Q1S83.6e-12293.2230S ribosomal protein S2, chloroplastic OS=Cucumis sativus OX=3659 GN=rps2 PE=3 ... [more]
W8E1203.6e-12293.22Ribosomal protein S2 OS=Cucumis hystrix OX=396994 GN=rps2 PE=3 SV=1[more]
BLAST of Cmc00g0001861 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00160.12.3e-11384.32ribosomal protein S2 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001865Ribosomal protein S2PRINTSPR00395RIBOSOMALS2coord: 66..75
score: 43.85
coord: 225..239
score: 55.28
coord: 116..133
score: 43.08
coord: 187..204
score: 39.66
coord: 204..215
score: 50.51
coord: 35..53
score: 46.72
IPR001865Ribosomal protein S2PFAMPF00318Ribosomal_S2coord: 38..253
e-value: 1.3E-75
score: 253.4
IPR001865Ribosomal protein S2CDDcd01425RPS2coord: 38..252
e-value: 3.82291E-87
score: 255.584
IPR005706Ribosomal protein S2, bacteria/mitochondria/plastidTIGRFAMTIGR01011TIGR01011coord: 33..255
e-value: 1.8E-76
score: 254.3
IPR005706Ribosomal protein S2, bacteria/mitochondria/plastidPANTHERPTHR1253430S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLARcoord: 25..255
IPR005706Ribosomal protein S2, bacteria/mitochondria/plastidHAMAPMF_00291_BRibosomal_S2_Bcoord: 31..254
score: 36.92252
NoneNo IPR availableGENE3D1.10.287.610Helix hairpin bincoord: 131..177
e-value: 4.6E-24
score: 86.2
NoneNo IPR availableGENE3D3.40.50.10490coord: 34..261
e-value: 1.2E-73
score: 248.5
IPR018130Ribosomal protein S2, conserved sitePROSITEPS00962RIBOSOMAL_S2_1coord: 35..46
IPR018130Ribosomal protein S2, conserved sitePROSITEPS00963RIBOSOMAL_S2_2coord: 187..211
IPR023591Ribosomal protein S2, flavodoxin-like domain superfamilySUPERFAMILY52313Ribosomal protein S2coord: 35..256

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc00g0001861.1Cmc00g0001861.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0016020 membrane
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome