Cmc00g0001841 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc00g0001841
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	DNA-directed RNA polymerase subunit beta''
Location	CMiso1.1chr00: 2212371 .. 2212763 (+)
RNA-Seq Expression	Cmc00g0001841
Synteny	Cmc00g0001841

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGACGTTCGGACTTGTTTATTCTTGAATTGGGACCGAGACAAAAAAAGCTCTTCTATCGAAGACGCGCGCGCTTCCTTTGTTGAAGTAAGTACAAATGGTCTGGTTCGAAATTTCCTACGAATAGACTTAGGGAAATCCGATACTGCGTATATGAGAAAAAGGAAAGATCCGTCAGGTTCAGGATTGATCTTTAATAATGAGTCAGATCGCACCAATATCAATCCATTTTTTTCTATTTATTCCAAGACAAGGGTTCCACAATCTCCGAGTCAAAATCAAGGAACTATTCGTACGTTGTTCAATAGAAATAAGGAAGGCCAATCTTTGAGAATTTTGTCAGCATCGAATTCTTTGCAAATGGATCTATTCAACGATGTAAAAGATTAG

mRNA sequence

ATGAAAGACGTTCGGACTTGTTTATTCTTGAATTGGGACCGAGACAAAAAAAGCTCTTCTATCGAAGACGCGCGCGCTTCCTTTGTTGAAGTAAGTACAAATGGTCTGGTTCGAAATTTCCTACGAATAGACTTAGGGAAATCCGATACTGCGTATATGAGAAAAAGGAAAGATCCGTCAGGTTCAGGATTGATCTTTAATAATGAGTCAGATCGCACCAATATCAATCCATTTTTTTCTATTTATTCCAAGACAAGGGTTCCACAATCTCCGAGTCAAAATCAAGGAACTATTCGTACGTTGTTCAATAGAAATAAGGAAGGCCAATCTTTGAGAATTTTGTCAGCATCGAATTCTTTGCAAATGGATCTATTCAACGATGTAAAAGATTAG

Coding sequence (CDS)

ATGAAAGACGTTCGGACTTGTTTATTCTTGAATTGGGACCGAGACAAAAAAAGCTCTTCTATCGAAGACGCGCGCGCTTCCTTTGTTGAAGTAAGTACAAATGGTCTGGTTCGAAATTTCCTACGAATAGACTTAGGGAAATCCGATACTGCGTATATGAGAAAAAGGAAAGATCCGTCAGGTTCAGGATTGATCTTTAATAATGAGTCAGATCGCACCAATATCAATCCATTTTTTTCTATTTATTCCAAGACAAGGGTTCCACAATCTCCGAGTCAAAATCAAGGAACTATTCGTACGTTGTTCAATAGAAATAAGGAAGGCCAATCTTTGAGAATTTTGTCAGCATCGAATTCTTTGCAAATGGATCTATTCAACGATGTAAAAGATTAG

Protein sequence

MKDVRTCLFLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSGLIFNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKEGQSLRILSASNSLQMDLFNDVKD

Homology

[Close]

BLAST of Cmc00g0001841 vs. NCBI nr
Match: YP_004841773.1 (RNA polymerase beta'' subunit [Cucumis melo subsp. melo] >YP_009860063.1 RNA polymerase beta'' subunit [Cucumis melo subsp. agrestis] >ASY96578.1 RNA polymerase beta'' subunit [Cucumis melo var. conomon] >ASY96665.1 RNA polymerase beta'' subunit [Cucumis melo var. makuwa] >ASY96839.1 RNA polymerase beta'' subunit [Cucumis melo var. dudaim] >ASY97100.1 RNA polymerase beta'' subunit [Cucumis melo var. inodorus] >AEM76882.1 RNA polymerase beta'' subunit [Cucumis melo subsp. melo])

HSP 1 Score: 243.0 bits (619), Expect = 1.4e-60
Identity = 123/127 (96.85%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 4   VRTCLFLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSG 63
           VRTCL LNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSG
Sbjct: 837 VRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSG 896

Query: 64  LIFNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKEGQSLRILSASNSLQMD 123
           LIFNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKE QSL ILSASN LQMD
Sbjct: 897 LIFNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMD 956

Query: 124 LFNDVKD 131
           LFNDVKD
Sbjct: 957 LFNDVKD 963

[Close]

BLAST of Cmc00g0001841 vs. NCBI nr
Match: QJF46373.1 (RNA polymerase beta'' subunit [Cucumis melo] >QRW36545.1 RNA polymerase beta'' subunit [Cucumis melo])

HSP 1 Score: 243.0 bits (619), Expect = 1.4e-60
Identity = 123/127 (96.85%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 4   VRTCLFLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSG 63
           VRTCL LNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSG
Sbjct: 833 VRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSG 892

Query: 64  LIFNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKEGQSLRILSASNSLQMD 123
           LIFNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKE QSL ILSASN LQMD
Sbjct: 893 LIFNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMD 952

Query: 124 LFNDVKD 131
           LFNDVKD
Sbjct: 953 LFNDVKD 959

[Close]

BLAST of Cmc00g0001841 vs. NCBI nr
Match: ASY96752.1 (RNA polymerase beta'' subunit [Cucumis melo var. momordica] >ASY96926.1 RNA polymerase beta'' subunit [Cucumis melo var. cantalupo] >ASY97274.1 RNA polymerase beta'' subunit [Cucumis melo var. flexuosus] >ASY97013.1 RNA polymerase beta'' subunit [Cucumis melo var. cantalupo] >ASY97187.1 RNA polymerase beta'' subunit [Cucumis melo var. cantalupo])

HSP 1 Score: 243.0 bits (619), Expect = 1.4e-60
Identity = 123/127 (96.85%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 4   VRTCLFLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSG 63
           VRTCL LNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSG
Sbjct: 837 VRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSG 896

Query: 64  LIFNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKEGQSLRILSASNSLQMD 123
           LIFNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKE QSL ILSASN LQMD
Sbjct: 897 LIFNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMD 956

Query: 124 LFNDVKD 131
           LFNDVKD
Sbjct: 957 LFNDVKD 963

[Close]

BLAST of Cmc00g0001841 vs. NCBI nr
Match: Q4VZP3.1 (RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName: Full=PEP; AltName: Full=Plastid-encoded RNA polymerase subunit beta''; Short=RNA polymerase subunit beta'' [Cucumis sativus] >AVE15321.1 RpoC2 [Cucumis sativus var. sativus] >AAZ94641.1 RNA polymerase beta II subunit [Cucumis sativus] >ABI97407.1 RNA polymerase beta' subunit [Cucumis sativus] >ABI98735.1 RNA polymerase beta' subunit [Cucumis sativus] >ARQ16068.1 RNA polymerase beta' subunit [Cucumis sativus])

HSP 1 Score: 237.7 bits (605), Expect = 5.8e-59
Identity = 120/127 (94.49%), Postives = 122/127 (96.06%), Query Frame = 0


Query: 4   VRTCLFLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSG 63
           VRTCL LNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAY+RKRKDPSGSG
Sbjct: 837 VRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYIRKRKDPSGSG 896

Query: 64  LIFNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKEGQSLRILSASNSLQMD 123
           LIFNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTL NRNKE QSL ILSASN LQ+D
Sbjct: 897 LIFNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQID 956

Query: 124 LFNDVKD 131
           LFNDVKD
Sbjct: 957 LFNDVKD 963

[Close]

BLAST of Cmc00g0001841 vs. NCBI nr
Match: YP_009004034.1 (RNA polymerase beta' subunit [Cucumis hystrix] >YP_247589.2 RNA polymerase beta'' subunit [Cucumis sativus] >ALF03291.1 RNA polymerase beta'' subunit [Cucumis sativus var. hardwickii] >AHJ61376.1 RNA polymerase beta' subunit [Cucumis hystrix] >ANF28367.1 RNA polymerase beta'' subunit [Cucumis sativus var. hardwickii] >ASY97448.1 RNA polymerase beta'' subunit [Cucumis sativus var. hardwickii] >QDH07735.1 RpoC2 [Cucumis sativus])

HSP 1 Score: 237.7 bits (605), Expect = 5.8e-59
Identity = 120/127 (94.49%), Postives = 122/127 (96.06%), Query Frame = 0


Query: 4   VRTCLFLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSG 63
           VRTCL LNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAY+RKRKDPSGSG
Sbjct: 833 VRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYIRKRKDPSGSG 892

Query: 64  LIFNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKEGQSLRILSASNSLQMD 123
           LIFNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTL NRNKE QSL ILSASN LQ+D
Sbjct: 893 LIFNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQID 952

Query: 124 LFNDVKD 131
           LFNDVKD
Sbjct: 953 LFNDVKD 959

[Close]

BLAST of Cmc00g0001841 vs. ExPASy Swiss-Prot
Match: Q4VZP3 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 7.6e-62
Identity = 120/127 (94.49%), Postives = 122/127 (96.06%), Query Frame = 0


Query: 4   VRTCLFLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSG 63
           VRTCL LNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAY+RKRKDPSGSG
Sbjct: 837 VRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYIRKRKDPSGSG 896

Query: 64  LIFNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKEGQSLRILSASNSLQMD 123
           LIFNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTL NRNKE QSL ILSASN LQ+D
Sbjct: 897 LIFNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQID 956

Query: 124 LFNDVKD 131
           LFNDVKD
Sbjct: 957 LFNDVKD 963

[Close]

BLAST of Cmc00g0001841 vs. ExPASy Swiss-Prot
Match: B1NWE0 (DNA-directed RNA polymerase subunit beta'' OS=Manihot esculenta OX=3983 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 6.1e-43
Identity = 93/127 (73.23%), Postives = 104/127 (81.89%), Query Frame = 0


Query: 4   VRTCLFLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYM-RKRKDPSGS 63
           VRTCL LNWD+DKKSSSIE+ARA+FVE+STNGL+R+FLRI+L K   +Y+ RKR DPSGS
Sbjct: 835 VRTCLVLNWDQDKKSSSIEEARAAFVEISTNGLIRDFLRINLVKFHISYIGRKRNDPSGS 894

Query: 64  GLIFNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKEGQSLRILSASNSLQM 123
             I NN SDRTNINPF+ IYSKTRV QS  QNQGTI TL N NKE QSL ILS+SN  QM
Sbjct: 895 EPISNNGSDRTNINPFYPIYSKTRVQQSLKQNQGTISTLLNINKECQSLIILSSSNCFQM 954

Query: 124 DLFNDVK 130
           D FNDVK
Sbjct: 955 DPFNDVK 961

[Close]

BLAST of Cmc00g0001841 vs. ExPASy Swiss-Prot
Match: A0ZZ25 (DNA-directed RNA polymerase subunit beta'' OS=Gossypium barbadense OX=3634 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.7e-40
Identity = 87/126 (69.05%), Postives = 97/126 (76.98%), Query Frame = 0


Query: 4   VRTCLFLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSG 63
           VRTCL L+WD+D KSS  E+  ASFVEV TNGL+R+FLRIDL KS   Y+RKR DPSGS 
Sbjct: 833 VRTCLVLSWDQDNKSSFAEEVCASFVEVRTNGLIRDFLRIDLVKSHIFYIRKRNDPSGSE 892

Query: 64  LIFNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKEGQSLRILSASNSLQMD 123
           LI +N SDRTN NPF+SIYS  R+ QS SQN GTI TL NRNKE QSL ILSASN  +M 
Sbjct: 893 LISDNRSDRTNKNPFYSIYSNARIQQSFSQNHGTIHTLLNRNKESQSLIILSASNCFRMG 952

Query: 124 LFNDVK 130
            FNDVK
Sbjct: 953 PFNDVK 958

[Close]

BLAST of Cmc00g0001841 vs. ExPASy Swiss-Prot
Match: Q2L8Z5 (DNA-directed RNA polymerase subunit beta'' OS=Gossypium hirsutum OX=3635 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.7e-40
Identity = 87/126 (69.05%), Postives = 97/126 (76.98%), Query Frame = 0


Query: 4   VRTCLFLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSG 63
           VRTCL L+WD+D KSS  E+  ASFVEV TNGL+R+FLRIDL KS   Y+RKR DPSGS 
Sbjct: 833 VRTCLVLSWDQDNKSSFAEEVCASFVEVRTNGLIRDFLRIDLVKSHIFYIRKRNDPSGSE 892

Query: 64  LIFNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKEGQSLRILSASNSLQMD 123
           LI +N SDRTN NPF+SIYS  R+ QS SQN GTI TL NRNKE QSL ILSASN  +M 
Sbjct: 893 LISDNRSDRTNKNPFYSIYSNARIQQSFSQNHGTIHTLLNRNKESQSLIILSASNCFRMG 952

Query: 124 LFNDVK 130
            FNDVK
Sbjct: 953 PFNDVK 958

[Close]

BLAST of Cmc00g0001841 vs. ExPASy Swiss-Prot
Match: Q14FG7 (DNA-directed RNA polymerase subunit beta'' OS=Populus alba OX=43335 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 3.7e-40
Identity = 90/129 (69.77%), Postives = 102/129 (79.07%), Query Frame = 0


Query: 4   VRTCLFLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYM-RKRKDPSGS 63
           VRTCL LNW++DKKSSSIE+AR  FVEVS NGL+R+FLRI LGKS  +Y+ RKR DPSG 
Sbjct: 828 VRTCLVLNWNQDKKSSSIEEARVYFVEVSINGLIRDFLRIHLGKSRISYISRKRNDPSGL 887

Query: 64  GLIFNNESDRTNINPFFSIYSKTRVPQSPSQNQGT--IRTLFNRNKEGQSLRILSASNSL 123
           GLI +N  DRTNINPF+SIYSKTR+PQS  QNQGT  I TL NRN E QSL ILS+SN  
Sbjct: 888 GLISDNGPDRTNINPFYSIYSKTRIPQSLKQNQGTISISTLLNRNMECQSLIILSSSNCF 947

Query: 124 QMDLFNDVK 130
           +MD  N VK
Sbjct: 948 RMDPSNGVK 956

[Close]

BLAST of Cmc00g0001841 vs. ExPASy TrEMBL
Match: A0A249RZW9 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo var. cantalupensis OX=3658 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 6.7e-61
Identity = 123/127 (96.85%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 4   VRTCLFLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSG 63
           VRTCL LNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSG
Sbjct: 837 VRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSG 896

Query: 64  LIFNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKEGQSLRILSASNSLQMD 123
           LIFNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKE QSL ILSASN LQMD
Sbjct: 897 LIFNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMD 956

Query: 124 LFNDVKD 131
           LFNDVKD
Sbjct: 957 LFNDVKD 963

[Close]

BLAST of Cmc00g0001841 vs. ExPASy TrEMBL
Match: A0A249RXP5 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo subsp. agrestis OX=217619 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 6.7e-61
Identity = 123/127 (96.85%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 4   VRTCLFLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSG 63
           VRTCL LNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSG
Sbjct: 837 VRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSG 896

Query: 64  LIFNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKEGQSLRILSASNSLQMD 123
           LIFNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKE QSL ILSASN LQMD
Sbjct: 897 LIFNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMD 956

Query: 124 LFNDVKD 131
           LFNDVKD
Sbjct: 957 LFNDVKD 963

[Close]

BLAST of Cmc00g0001841 vs. ExPASy TrEMBL
Match: A0A286NFX2 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo var. flexuosus OX=1120798 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 6.7e-61
Identity = 123/127 (96.85%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 4   VRTCLFLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSG 63
           VRTCL LNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSG
Sbjct: 837 VRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSG 896

Query: 64  LIFNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKEGQSLRILSASNSLQMD 123
           LIFNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKE QSL ILSASN LQMD
Sbjct: 897 LIFNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMD 956

Query: 124 LFNDVKD 131
           LFNDVKD
Sbjct: 957 LFNDVKD 963

[Close]

BLAST of Cmc00g0001841 vs. ExPASy TrEMBL
Match: A0A249RYY9 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo var. dudaim OX=2034236 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 6.7e-61
Identity = 123/127 (96.85%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 4   VRTCLFLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSG 63
           VRTCL LNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSG
Sbjct: 837 VRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSG 896

Query: 64  LIFNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKEGQSLRILSASNSLQMD 123
           LIFNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKE QSL ILSASN LQMD
Sbjct: 897 LIFNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMD 956

Query: 124 LFNDVKD 131
           LFNDVKD
Sbjct: 957 LFNDVKD 963

[Close]

BLAST of Cmc00g0001841 vs. ExPASy TrEMBL
Match: A0A249RYA1 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo var. conomon OX=3657 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 6.7e-61
Identity = 123/127 (96.85%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 4   VRTCLFLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSG 63
           VRTCL LNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSG
Sbjct: 837 VRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSG 896

Query: 64  LIFNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKEGQSLRILSASNSLQMD 123
           LIFNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKE QSL ILSASN LQMD
Sbjct: 897 LIFNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMD 956

Query: 124 LFNDVKD 131
           LFNDVKD
Sbjct: 957 LFNDVKD 963

[Close]

BLAST of Cmc00g0001841 vs. TAIR 10
Match: ATCG00170.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 119.4 bits (298), Expect = 2.2e-27
Identity = 69/127 (54.33%), Postives = 86/127 (67.72%), Query Frame = 0


Query: 4   VRTCLFLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSG 63
           VRTCL LNWD   K+SS+E+ RA FVEVST GL+++F+RI L KS  +Y+RKR +   SG
Sbjct: 833 VRTCLVLNWD---KNSSLEEVRAFFVEVSTKGLIQDFIRIGLVKSHISYIRKRNNSPDSG 892

Query: 64  LIFNNESDRTNINPFFSIYSKTRV-PQSPSQNQGTIRTLFNRNKEGQSLRILSASNSLQM 123
           LI        ++NPF+SI  K+ +  QS  QN GTIR   NRNKE QSL ILS+SN  +M
Sbjct: 893 LI-----SADHMNPFYSISPKSGILQQSLRQNHGTIRMFLNRNKESQSLLILSSSNCFRM 951

Query: 124 DLFNDVK 130
             FN VK
Sbjct: 953 GPFNHVK 951

The following BLAST results are available for this feature:

BLAST of Cmc00g0001841 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_004841773.1	1.4e-60	96.85	RNA polymerase beta'' subunit [Cucumis melo subsp. melo] >YP_009860063.1 RNA pol...	[more]
QJF46373.1	1.4e-60	96.85	RNA polymerase beta'' subunit [Cucumis melo] >QRW36545.1 RNA polymerase beta'' s...	[more]
ASY96752.1	1.4e-60	96.85	RNA polymerase beta'' subunit [Cucumis melo var. momordica] >ASY96926.1 RNA poly...	[more]
Q4VZP3.1	5.8e-59	94.49	RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName: Full=PEP; Alt...	[more]
YP_009004034.1	5.8e-59	94.49	RNA polymerase beta' subunit [Cucumis hystrix] >YP_247589.2 RNA polymerase beta'...	[more]

BLAST of Cmc00g0001841 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZP3	7.6e-62	94.49	DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 P...	[more]
B1NWE0	6.1e-43	73.23	DNA-directed RNA polymerase subunit beta'' OS=Manihot esculenta OX=3983 GN=rpoC2...	[more]
A0ZZ25	1.7e-40	69.05	DNA-directed RNA polymerase subunit beta'' OS=Gossypium barbadense OX=3634 GN=rp...	[more]
Q2L8Z5	1.7e-40	69.05	DNA-directed RNA polymerase subunit beta'' OS=Gossypium hirsutum OX=3635 GN=rpoC...	[more]
Q14FG7	3.7e-40	69.77	DNA-directed RNA polymerase subunit beta'' OS=Populus alba OX=43335 GN=rpoC2 PE=...	[more]

BLAST of Cmc00g0001841 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A249RZW9	6.7e-61	96.85	DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo var. cantalupensis OX...	[more]
A0A249RXP5	6.7e-61	96.85	DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo subsp. agrestis OX=21...	[more]
A0A286NFX2	6.7e-61	96.85	DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo var. flexuosus OX=112...	[more]
A0A249RYY9	6.7e-61	96.85	DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo var. dudaim OX=203423...	[more]
A0A249RYA1	6.7e-61	96.85	DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo var. conomon OX=3657 ...	[more]

BLAST of Cmc00g0001841 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00170.1	2.2e-27	54.33	DNA-directed RNA polymerase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 4..80
None	No IPR available	PANTHER	PTHR19376:SF47	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA''	coord: 4..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc00g0001841.1	Cmc00g0001841.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0000428	DNA-directed RNA polymerase complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0008270	zinc ion binding