Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCGCAAGGAAATGCCTGAAAGGGGTAGCAAACGAAGAGTCGTTTATCTATACTCGTCGTCGGAGGACGACGAAGAGGAATCGGACGAGGAGTACGATGATGAAGACGATGACGAAGGGGAATCGGAAAAGGAGTTTGATAATGAATGCAGCGACAACGATTGTGATGAAGTTCTCTCCCAGCGAGTCATCCGCTTTCTTAAAGGTATTTTAGACCGTTTCTTCCTTTTCCATTCATCACTCCGTCATGGTGTTCAAATTCGAGTTCAAAGTCCCAGTGTCGATTGAGAGAAATGAAATCGATGATTAGATAGGTTGTTGGGAAATTCGTAGGGTATTGGATCTCTTAATTATCTCATTTCAAACATGTTCTGTCGCAGAGAATAAAAATTTAGATTCCTTAACACTTCATGATTGCAAAGCTTATTTACGGGAGAATAGGCTAAGAATAGCGGGGACTAAAGCCGTCTGTATTCAAAGACTCCAGGAACATTGGAGGTACGTGGATTCTTCATCTTTAAACTCAAGATACACATCTTAATATTGCGTTCAATTAGGAAATTTTTGAAGTTTCCATCTAGTCCGATCGCTGAATATTTGAAATTGTTAGTGCATTTTCATGGTGGAAATCTGCTATGTACTCATCTATGGAAGTCTTCTGATATTTAGAGAAGCGACTATTGAGTGTTTCGGTAAATGTGGATTGTCATCAATTATGATTCTATAGACTTTAATAGATGGAAAACAGAAGATTTTTTAGATAATTTTATGTTGTGAAATTGAGTTTTCCTTGTTCCTCAATGGATTTTGGAGCCTTTTAACTTCTAGTTCTGCATTGATACATATCAAACCATAAGGCAGCAAAACATAATTTGGGTTTGGTACTGTTTTCCATTTGTTGCTGGTAAATCTTGATTACCTGATCTGTATTCTACCTCTTCCCTTCTGTTGTAATCACTTTGGGTCTCTGCAAAGTTGCACCATTATATAGAAGTTATTAAGCAAAAAGGGAGGAGATTCTGAAAGAATAATGTGCCATTTATTCAATTCTTCACAAGGAGTTAAATATACAATAGGTATTAGGCACAACTTGTGAGATCCCACATCGGTTGGAGCGGGGAACAAAACATCCCTTATAAGGGTGTGGAAACCTCTCCCTAGTAAACACGTTTTAAAACCATGAAGCTGATGGCGATATGTAACGGGCCAAAATGGACAATATCTGCTAGCGGCGTCTGTTACAAATGGTATCAAAACTAGGCACCGAGCGGTGTGCTAGCGAGGACGCTGGCCCTCAAGGGAGTGAATTGTGAGTTCTACATCGTTTGGAGAGGGGAACGAAGCATTTCTTATAAGGGTGTAGAAACTTCTCCCTAGTAGACGCGTTTCAAACCGTGAAGCTAACGGCGATACGTAACGGGCCAAAGCGGACAATATCTGTTAGCGATGACTATTACCCAACTACTCCTAACAAAACTTCTTTGCTCTCTTCTTTTTCTCCCAACTCAGGATGAAGGATGGAAATGGTGAAGTGCACTATCCAAGGTCATCCTTTGTTGTCAATTGTACTGGTAATTTCTATGTACATTTGTCATAGTATTTTCTTTGATCACTCTTTTAGTGGCTGTAATTATTCTATTAAAACAACAATGCAGGTGATGTTTGTAGGGGAGATACTGTTTTGTTCACTCAGAAAGTTTATGCAAAGTACTCAAACAAGTTTCTCTTCCACCAGTAGTCTTGTGTTAGATATTTTAGATTTGCACTCCTAATTCTTGTAGCTTAATTTTTTTATAGGTTTGATAAAGTAACTAGGCGTGGAGGGCTTATAGGGAAGAGAACTGTAGCAGGGAGGGTAGTGAAGGAGAGCTATGGTGCCAGCAAACAGCAGCATACTTTTACTGTAAGGCTATTTTTTCTGTTCTTGAAATCATTTTCTCATATCGTAATTTGAATTCGTTGTGCATTATTAGTACCACAATTCGTAATATGGTCAATATTGTAATATTCACTGCAATTATTATGTAGCAGTCGGTGAGAAATATACTTGTGCATTTTTTTCTTTTCTTTTGTTCATTCGCTTATATATTTTTTCATTTGCGATTCATCTTTCCAACGCTTGTGACTATAATGTGCTAGGTCGAAGTTTTATGGAGCAGGGGAGTTCGGAAGTTACCCCCACTTTATCCTCTACTTGTTAAGGGTCGAAATCTCTATAAACTAAGAACTTTCAGACGGGTAAGTTCTTACTTACGTACATAAATATATTTTATTTTCATACAAAGCATTTGCGATTGTGGGGATTTGTCCTGTGGATAAAAATTATAAATCAAATTGATTTTCTTAGTTGAGGTATTGCTGGTGGAAGTGTACGTATGTAAATATGAATTTAGTAACAGAACAATGCTCATTGTGTCTTAAATTCTCAAGCATGAACCAAGTGAGTGAGTTTGGCTCCAAGATATCCATCCTTTCCAAATTTGTATATAAGAGCTAAAGTTCTACGAAATATGATTTTGCTAAAGTTTGTATTGTCACCTACAAACATCACCTACATACCAGGCGATTGATGGATGTTATCTCCCCGTTGAGTTTGTTTGATTCTACGTATGATTTATGATTTATGAATTTTGTGCATTAGGTGATTGATAGGGATATCTCACTAATCAAACATGTATAGAGTATGTTCTCATATGTCATAGGTGATCGATAGGAATATCTCCCCAGTAAAGCATGCATGAGCGAACCAAACTAAGATTAGAGTAGTGGAGCTAGAGCAAATTATACGTTGACATCTAGCACCTTAGGATCGTGAGTGGTATTTGGGTCCAAAATATTCATCCTTTCCAAATTTGTATAAAAGAGCTAAAGTTTGTATGTCAGATCTTGTTTCTGATCATAAATGCAAGCCAATGACCAATATTGCTGAGTTTTCTTCATTATTTGTATGTTTTACTCAGCTTTGGAATGATGAAGCTGAAAGAATTCAAGTTCTAGCAGAGAAGCACAAAAGAGGTGCGGCTGCTCGGGGTGTACGAGCATTGCAGAAAAGGAAAAGAAAACTTCTACAAATCGGAGGTGGTATAATTCACAACCACTACTCCCCAAAACATGAAAAGGAGCTTGCTTGCTGCAATCTAATAAAAGATTGAATGTTACCATATTTTTGTATTGTAATGTCCAGGAAGTGGAAAGAATCAAGGACGTGCTCAACTTCCAAGACAAGCCTTGAACAGTAACGGGAGTCGCAAGAGTATGCGTTCAAGGGACAAGAACAATGCTGTTCGTAGACACCCAGCGTAGGAAGACAGAATGGACATCGAAAAATATAGTGGTCTGCTCTTGAGCTTACAAATGGCCTTTGAACTTGCGTTACAAATTGCTCTTTTAAGTTTGAAAAGGAATCAGTGAACAACTCTTCAAATAATCTAACCAAAATTGACTTCAAAGTACCGGGAAAAGTCAAAACAGGCATTTAGGTTCGTTTGTAAATGTAATTAGCCTTTACTTTCACGATATCTCGTGATGAAGTAAGGTTTTAAATGAATTTAATTAGATGTAAAATGGTTAAGATCAACACTATCT
mRNA sequence
TCCGCAAGGAAATGCCTGAAAGGGGTAGCAAACGAAGAGTCGTTTATCTATACTCGTCGTCGGAGGACGACGAAGAGGAATCGGACGAGGAGTACGATGATGAAGACGATGACGAAGGGGAATCGGAAAAGGAGTTTGATAATGAATGCAGCGACAACGATTGTGATGAAGTTCTCTCCCAGCGAGTCATCCGCTTTCTTAAAGAGAATAAAAATTTAGATTCCTTAACACTTCATGATTGCAAAGCTTATTTACGGGAGAATAGGCTAAGAATAGCGGGGACTAAAGCCGTCTGTATTCAAAGACTCCAGGAACATTGGAGGATGAAGGATGGAAATGGTGAAGTGCACTATCCAAGGTCATCCTTTGTTGTCAATTGTACTGGTGATGTTTGTAGGGGAGATACTGTTTTGTTCACTCAGAAAGTTTATGCAAAGTTTGATAAAGTAACTAGGCGTGGAGGGCTTATAGGGAAGAGAACTGTAGCAGGGAGGGTAGTGAAGGAGAGCTATGGTGCCAGCAAACAGCAGCATACTTTTACTGTCGAAGTTTTATGGAGCAGGGGAGTTCGGAAGTTACCCCCACTTTATCCTCTACTTGTTAAGGGTCGAAATCTCTATAAACTAAGAACTTTCAGACGGCTTTGGAATGATGAAGCTGAAAGAATTCAAGTTCTAGCAGAGAAGCACAAAAGAGGTGCGGCTGCTCGGGGTGTACGAGCATTGCAGAAAAGGAAAAGAAAACTTCTACAAATCGGAGGAAGTGGAAAGAATCAAGGACGTGCTCAACTTCCAAGACAAGCCTTGAACAGTAACGGGAGTCGCAAGAGTATGCGTTCAAGGGACAAGAACAATGCTGTTCGTAGACACCCAGCGTAGGAAGACAGAATGGACATCGAAAAATATAGTGGTCTGCTCTTGAGCTTACAAATGGCCTTTGAACTTGCGTTACAAATTGCTCTTTTAAGTTTGAAAAGGAATCAGTGAACAACTCTTCAAATAATCTAACCAAAATTGACTTCAAAGTACCGGGAAAAGTCAAAACAGGCATTTAGGTTCGTTTGTAAATGTAATTAGCCTTTACTTTCACGATATCTCGTGATGAAGTAAGGTTTTAAATGAATTTAATTAGATGTAAAATGGTTAAGATCAACACTATCT
Coding sequence (CDS)
ATGCCTGAAAGGGGTAGCAAACGAAGAGTCGTTTATCTATACTCGTCGTCGGAGGACGACGAAGAGGAATCGGACGAGGAGTACGATGATGAAGACGATGACGAAGGGGAATCGGAAAAGGAGTTTGATAATGAATGCAGCGACAACGATTGTGATGAAGTTCTCTCCCAGCGAGTCATCCGCTTTCTTAAAGAGAATAAAAATTTAGATTCCTTAACACTTCATGATTGCAAAGCTTATTTACGGGAGAATAGGCTAAGAATAGCGGGGACTAAAGCCGTCTGTATTCAAAGACTCCAGGAACATTGGAGGATGAAGGATGGAAATGGTGAAGTGCACTATCCAAGGTCATCCTTTGTTGTCAATTGTACTGGTGATGTTTGTAGGGGAGATACTGTTTTGTTCACTCAGAAAGTTTATGCAAAGTTTGATAAAGTAACTAGGCGTGGAGGGCTTATAGGGAAGAGAACTGTAGCAGGGAGGGTAGTGAAGGAGAGCTATGGTGCCAGCAAACAGCAGCATACTTTTACTGTCGAAGTTTTATGGAGCAGGGGAGTTCGGAAGTTACCCCCACTTTATCCTCTACTTGTTAAGGGTCGAAATCTCTATAAACTAAGAACTTTCAGACGGCTTTGGAATGATGAAGCTGAAAGAATTCAAGTTCTAGCAGAGAAGCACAAAAGAGGTGCGGCTGCTCGGGGTGTACGAGCATTGCAGAAAAGGAAAAGAAAACTTCTACAAATCGGAGGAAGTGGAAAGAATCAAGGACGTGCTCAACTTCCAAGACAAGCCTTGAACAGTAACGGGAGTCGCAAGAGTATGCGTTCAAGGGACAAGAACAATGCTGTTCGTAGACACCCAGCGTAG
Protein sequence
MPERGSKRRVVYLYSSSEDDEEESDEEYDDEDDDEGESEKEFDNECSDNDCDEVLSQRVIRFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRLQEHWRMKDGNGEVHYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERIQVLAEKHKRGAAARGVRALQKRKRKLLQIGGSGKNQGRAQLPRQALNSNGSRKSMRSRDKNNAVRRHPA
Homology
BLAST of CmaCh20G011310 vs. ExPASy Swiss-Prot
Match:
Q338N2 (Zinc finger CCCH domain-containing protein 62 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0391300 PE=4 SV=2)
HSP 1 Score: 171.4 bits (433), Expect = 1.5e-41
Identity = 121/308 (39.29%), Postives = 166/308 (53.90%), Query Frame = 0
Query: 3 ERGSKRRVVYLYSSSEDDEEESDEEYD--DEDDDEGES-------------EKEFDNEC- 62
E GS+ V S+D+EEE E YD +EDD E S + FD
Sbjct: 25 EEGSEEEV-----ESDDEEEEEGEGYDWSEEDDPEAASLAGICDPDAGSYDDPTFDPAAD 84
Query: 63 SDNDCDEVLSQRVIRF------------------------------LKENKNLDSLTLHD 122
D + D VL R+ R L + L+ L +++
Sbjct: 85 GDLEVDAVLRSRMARMSLSSARKDRKGSRMPKMGKEEMDLLAMVDKLMHDGQLEKLKVYE 144
Query: 123 CKAYLRENRLRIAGTKAVCIQRLQEHWRMKDGNGEVHYPRSSFVVNCTGDVCRGDTVLFT 182
CKAYLR ++LR++G K V + R++ +K GEV YP SSFV+NC GD C+GD V+F
Sbjct: 145 CKAYLRMHKLRLSGNKEVLLTRIRGQIEVKT-MGEVKYPVSSFVLNCQGDSCKGDVVVFE 204
Query: 183 QKVYAKFDKVTR--RGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYP 242
Q +Y + R +G L G+RT AGR++KESYG KQQHTFT+E+LWSRG + PPL+P
Sbjct: 205 QNIYKRKKGAPRGVKGHLCGQRTNAGRIIKESYGTKKQQHTFTIEILWSRGYKPWPPLHP 264
Query: 243 LLVKGRNLYKLRTFRRLWNDEAERIQVLAEKHKRGAAA---RGVRALQKRKRKLLQIGGS 260
LL+KGRNLYK +T R+ W DE ER + L EKH RG A R VR K ++ ++ +
Sbjct: 265 LLIKGRNLYKDKTMRQPWLDEEERNRALQEKHARGYVARKTREVRIKDKENERMRRLNRN 324
BLAST of CmaCh20G011310 vs. ExPASy TrEMBL
Match:
A0A6J1I2K8 (zinc finger CCCH domain-containing protein 62 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470342 PE=4 SV=1)
HSP 1 Score: 555.4 bits (1430), Expect = 1.4e-154
Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 0
Query: 1 MPERGSKRRVVYLYSSSEDDEEESDEEYDDEDDDEGESEKEFDNECSDNDCDEVLSQRVI 60
MPERGSKRRVVYLYSSSEDDEEESDEEYDDEDDDEGESEKEFDNECSDNDCDEVLSQRVI
Sbjct: 1 MPERGSKRRVVYLYSSSEDDEEESDEEYDDEDDDEGESEKEFDNECSDNDCDEVLSQRVI 60
Query: 61 RFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRLQEHWRMKDGNGEVHYPRSSFV 120
RFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRLQEHWRMKDGNGEVHYPRSSFV
Sbjct: 61 RFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRLQEHWRMKDGNGEVHYPRSSFV 120
Query: 121 VNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEV 180
VNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEV
Sbjct: 121 VNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEV 180
Query: 181 LWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERIQVLAEKHKRGAAARGVRALQK 240
LWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERIQVLAEKHKRGAAARGVRALQK
Sbjct: 181 LWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERIQVLAEKHKRGAAARGVRALQK 240
Query: 241 RKRKLLQIGGSGKNQGRAQLPRQALNSNGSRKSMRSRDKNNAVRRHPA 289
RKRKLLQIGGSGKNQGRAQLPRQALNSNGSRKSMRSRDKNNAVRRHPA
Sbjct: 241 RKRKLLQIGGSGKNQGRAQLPRQALNSNGSRKSMRSRDKNNAVRRHPA 288
BLAST of CmaCh20G011310 vs. ExPASy TrEMBL
Match:
A0A6J1EQD5 (zinc finger CCCH domain-containing protein 62-like OS=Cucurbita moschata OX=3662 GN=LOC111434886 PE=4 SV=1)
HSP 1 Score: 511.9 bits (1317), Expect = 1.7e-141
Identity = 265/288 (92.01%), Postives = 274/288 (95.14%), Query Frame = 0
Query: 1 MPERGSKRRVVYLYSSSEDDEEESDEEYDDEDDDEGESEKEFDNECSDNDCDEVLSQRVI 60
MPERGSKRRV+YL SSSE+DEEES DD+EGE E+EFDNECSDNDCDE+LSQRVI
Sbjct: 1 MPERGSKRRVIYLSSSSEEDEEES-------DDEEGEWEEEFDNECSDNDCDELLSQRVI 60
Query: 61 RFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRLQEHWRMKDGNGEVHYPRSSFV 120
RFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQR+ EHWRMKDGNGE HYPRSSFV
Sbjct: 61 RFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRVLEHWRMKDGNGEAHYPRSSFV 120
Query: 121 VNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEV 180
VNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEV
Sbjct: 121 VNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEV 180
Query: 181 LWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERIQVLAEKHKRGAAARGVRALQK 240
LWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAER+QVLAEKHKRGAAARGVRALQK
Sbjct: 181 LWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERVQVLAEKHKRGAAARGVRALQK 240
Query: 241 RKRKLLQIGGSGKNQGRAQLPRQALNSNGSRKSMRSRDKNNAVRRHPA 289
RKRKL+Q+GGSGKNQG QLPRQA NSNGSRKSMRSRDKNNAVRRHPA
Sbjct: 241 RKRKLVQMGGSGKNQGHVQLPRQASNSNGSRKSMRSRDKNNAVRRHPA 281
BLAST of CmaCh20G011310 vs. ExPASy TrEMBL
Match:
A0A0A0LQ19 (SAP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G292810 PE=4 SV=1)
HSP 1 Score: 427.2 bits (1097), Expect = 5.6e-116
Identity = 228/301 (75.75%), Postives = 252/301 (83.72%), Query Frame = 0
Query: 1 MPERGSKRRVVYLYSSSEDDEEE---------------SDEEYDDEDDDEGESEKEFDNE 60
M +RGSKR V+ + SSS D +E S+EE+DD+DDDEGES +EFDNE
Sbjct: 1 MTKRGSKRTVICISSSSSSDADEEESEEYDDEDDGVGDSEEEFDDKDDDEGESGEEFDNE 60
Query: 61 CSDNDCDEVLSQRVIRFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRLQEHWRM 120
SDN CDEVLS+RVIRFLKENKNLDSLTL+DCKAYLRE+RLRIAGTKAVCIQR++EHWR+
Sbjct: 61 ESDNGCDEVLSKRVIRFLKENKNLDSLTLNDCKAYLRESRLRIAGTKAVCIQRVKEHWRL 120
Query: 121 KDGNGEVHYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKE 180
K+GNGEV YP+SSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTR GGLIGKRTVAGRVVKE
Sbjct: 121 KNGNGEVQYPKSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRHGGLIGKRTVAGRVVKE 180
Query: 181 SYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERIQVLAEK 240
SYGASKQQHTFTVEVLWSRGVRKL PLYPLLVKGRNLYKLRTFR LWNDEAER+Q LAEK
Sbjct: 181 SYGASKQQHTFTVEVLWSRGVRKLRPLYPLLVKGRNLYKLRTFRLLWNDEAERVQALAEK 240
Query: 241 HKRGAAARGVRALQKRKRKLLQIGGSGKNQGRAQLPRQALNSNGSRKSMRSRDKNNAVRR 287
H+RG AARG+RA+QK+KRK +Q G +NQG L RQ L S R+ M SRD NN VRR
Sbjct: 241 HRRGVAARGLRAMQKKKRKTIQTKGCAENQGHVHLARQPLKSKEKRQRMPSRDNNNVVRR 300
BLAST of CmaCh20G011310 vs. ExPASy TrEMBL
Match:
A0A6J1E0C9 (zinc finger CCCH domain-containing protein 62 OS=Momordica charantia OX=3673 GN=LOC111024763 PE=4 SV=1)
HSP 1 Score: 426.4 bits (1095), Expect = 9.5e-116
Identity = 227/298 (76.17%), Postives = 251/298 (84.23%), Query Frame = 0
Query: 1 MPERGSKRRVVYLYSSSE-----------DDEEESDEEYDDEDDDEGESEKEFDNECSDN 60
M +RG+KR + + SSS+ DDEEESDE+YD+EDDDEGESE+E+DNE SD+
Sbjct: 1 MTDRGNKRSFICISSSSDDDDDEDEVSCGDDEEESDEQYDEEDDDEGESEEEYDNEGSDD 60
Query: 61 DCDEVLSQRVIRFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRLQEHWRMKDGN 120
DCD+VLS+RVIRFLKENKNLDSLTL DCKAYLREN LRIAGTK+VCIQR++EHWRMKD N
Sbjct: 61 DCDDVLSERVIRFLKENKNLDSLTLKDCKAYLRENGLRIAGTKSVCIQRIREHWRMKDEN 120
Query: 121 GEVHYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGA 180
GE YPRSSFVVNCTGDVCRGD VLFTQKVYAKFDKVTR GGLIGKRTVAGRVVKESYGA
Sbjct: 121 GEAQYPRSSFVVNCTGDVCRGDVVLFTQKVYAKFDKVTRHGGLIGKRTVAGRVVKESYGA 180
Query: 181 SKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERIQVLAEKHKRG 240
+KQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRTFR+LWNDEAER+QVLAEKHKRG
Sbjct: 181 TKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRTFRQLWNDEAERLQVLAEKHKRG 240
Query: 241 AAARGVRALQKRKRKLLQIGGSGKNQGRAQLPRQALNSNGSRKSMRSRDKNNAVRRHP 288
AAAR +RA++ RK LQ G KNQ RQ LNS S K M+S+ KN +RRHP
Sbjct: 241 AAARSLRAMRTRKINFLQTEGGVKNQRHFHPARQTLNSKESSKRMQSKGKNKVLRRHP 298
BLAST of CmaCh20G011310 vs. ExPASy TrEMBL
Match:
A0A1S4E1S9 (zinc finger CCCH domain-containing protein 62-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497448 PE=4 SV=1)
HSP 1 Score: 426.4 bits (1095), Expect = 9.5e-116
Identity = 233/306 (76.14%), Postives = 255/306 (83.33%), Query Frame = 0
Query: 1 MPERGSKRRVVYLYSSSEDDEEE-------------SDEEYDD---------EDDDEGES 60
M +RGSKR V+ + SSS+DDEEE S+EE+ D EDDDEGES
Sbjct: 30 MSKRGSKRTVICISSSSDDDEEESVEYDDEDDGVGDSEEEFHDEDDGDVNSEEDDDEGES 89
Query: 61 EKEFDNECSDNDCDE-VLSQRVIRFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQ 120
+EFD+E SDN CDE VLS+RVIRFLKENKNLDSLTL+DCKAYLRENRLRIAGTKAVCIQ
Sbjct: 90 GEEFDDEESDNGCDEGVLSKRVIRFLKENKNLDSLTLNDCKAYLRENRLRIAGTKAVCIQ 149
Query: 121 RLQEHWRMKDGNGEVHYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRT 180
R++EHWR+KDGNGEV YPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTR GGLIGKRT
Sbjct: 150 RVKEHWRLKDGNGEVQYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRHGGLIGKRT 209
Query: 181 VAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAE 240
VAGRVVKESYGASKQQHTFTVEVLW RGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAE
Sbjct: 210 VAGRVVKESYGASKQQHTFTVEVLWIRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAE 269
Query: 241 RIQVLAEKHKRGAAARGVRALQKRKRKLLQIGGSGKNQGRAQLPRQALNSNGSRKSMRSR 284
R+QVLAEKH+RGAAAR +RA+QK+KRK++Q G KNQG L RQ L S R+ M SR
Sbjct: 270 RVQVLAEKHRRGAAARDLRAMQKKKRKIIQTKGCAKNQGHVHLARQPLKSKEKRQRMPSR 329
BLAST of CmaCh20G011310 vs. NCBI nr
Match:
XP_022971662.1 (zinc finger CCCH domain-containing protein 62 isoform X1 [Cucurbita maxima])
HSP 1 Score: 555.4 bits (1430), Expect = 2.8e-154
Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 0
Query: 1 MPERGSKRRVVYLYSSSEDDEEESDEEYDDEDDDEGESEKEFDNECSDNDCDEVLSQRVI 60
MPERGSKRRVVYLYSSSEDDEEESDEEYDDEDDDEGESEKEFDNECSDNDCDEVLSQRVI
Sbjct: 1 MPERGSKRRVVYLYSSSEDDEEESDEEYDDEDDDEGESEKEFDNECSDNDCDEVLSQRVI 60
Query: 61 RFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRLQEHWRMKDGNGEVHYPRSSFV 120
RFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRLQEHWRMKDGNGEVHYPRSSFV
Sbjct: 61 RFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRLQEHWRMKDGNGEVHYPRSSFV 120
Query: 121 VNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEV 180
VNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEV
Sbjct: 121 VNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEV 180
Query: 181 LWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERIQVLAEKHKRGAAARGVRALQK 240
LWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERIQVLAEKHKRGAAARGVRALQK
Sbjct: 181 LWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERIQVLAEKHKRGAAARGVRALQK 240
Query: 241 RKRKLLQIGGSGKNQGRAQLPRQALNSNGSRKSMRSRDKNNAVRRHPA 289
RKRKLLQIGGSGKNQGRAQLPRQALNSNGSRKSMRSRDKNNAVRRHPA
Sbjct: 241 RKRKLLQIGGSGKNQGRAQLPRQALNSNGSRKSMRSRDKNNAVRRHPA 288
BLAST of CmaCh20G011310 vs. NCBI nr
Match:
XP_023512636.1 (zinc finger CCCH domain-containing protein 62 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 531.2 bits (1367), Expect = 5.6e-147
Identity = 277/289 (95.85%), Postives = 282/289 (97.58%), Query Frame = 0
Query: 1 MPERGSKRRVVYLYSSS-EDDEEESDEEYDDEDDDEGESEKEFDNECSDNDCDEVLSQRV 60
MPERGSKRRV+YL SSS EDDEEESDEEYDDEDDDEGESE+EFDN CSDNDCDEVLSQRV
Sbjct: 1 MPERGSKRRVIYLSSSSEEDDEEESDEEYDDEDDDEGESEEEFDNGCSDNDCDEVLSQRV 60
Query: 61 IRFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRLQEHWRMKDGNGEVHYPRSSF 120
IRFLKENKNLDSLTL+DCKAYLRENRLRIAGTKAVCIQRLQEHWRMKDGNGE HYPRSSF
Sbjct: 61 IRFLKENKNLDSLTLNDCKAYLRENRLRIAGTKAVCIQRLQEHWRMKDGNGEAHYPRSSF 120
Query: 121 VVNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVE 180
VVNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVE
Sbjct: 121 VVNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVE 180
Query: 181 VLWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERIQVLAEKHKRGAAARGVRALQ 240
VLWS GVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAER+QVLAEKHKRGAAARGVRALQ
Sbjct: 181 VLWSTGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERVQVLAEKHKRGAAARGVRALQ 240
Query: 241 KRKRKLLQIGGSGKNQGRAQLPRQALNSNGSRKSMRSRDKNNAVRRHPA 289
KRKRKL+QIGGSGKNQG QLPRQALNSNGSRKSMRSRDKNNAVRRHPA
Sbjct: 241 KRKRKLVQIGGSGKNQGHVQLPRQALNSNGSRKSMRSRDKNNAVRRHPA 289
BLAST of CmaCh20G011310 vs. NCBI nr
Match:
XP_022927980.1 (zinc finger CCCH domain-containing protein 62-like [Cucurbita moschata])
HSP 1 Score: 511.9 bits (1317), Expect = 3.5e-141
Identity = 265/288 (92.01%), Postives = 274/288 (95.14%), Query Frame = 0
Query: 1 MPERGSKRRVVYLYSSSEDDEEESDEEYDDEDDDEGESEKEFDNECSDNDCDEVLSQRVI 60
MPERGSKRRV+YL SSSE+DEEES DD+EGE E+EFDNECSDNDCDE+LSQRVI
Sbjct: 1 MPERGSKRRVIYLSSSSEEDEEES-------DDEEGEWEEEFDNECSDNDCDELLSQRVI 60
Query: 61 RFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRLQEHWRMKDGNGEVHYPRSSFV 120
RFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQR+ EHWRMKDGNGE HYPRSSFV
Sbjct: 61 RFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRVLEHWRMKDGNGEAHYPRSSFV 120
Query: 121 VNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEV 180
VNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEV
Sbjct: 121 VNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEV 180
Query: 181 LWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERIQVLAEKHKRGAAARGVRALQK 240
LWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAER+QVLAEKHKRGAAARGVRALQK
Sbjct: 181 LWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERVQVLAEKHKRGAAARGVRALQK 240
Query: 241 RKRKLLQIGGSGKNQGRAQLPRQALNSNGSRKSMRSRDKNNAVRRHPA 289
RKRKL+Q+GGSGKNQG QLPRQA NSNGSRKSMRSRDKNNAVRRHPA
Sbjct: 241 RKRKLVQMGGSGKNQGHVQLPRQASNSNGSRKSMRSRDKNNAVRRHPA 281
BLAST of CmaCh20G011310 vs. NCBI nr
Match:
KAG6571408.1 (Zinc finger CCCH domain-containing protein 62, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 510.8 bits (1314), Expect = 7.9e-141
Identity = 264/288 (91.67%), Postives = 275/288 (95.49%), Query Frame = 0
Query: 1 MPERGSKRRVVYLYSSSEDDEEESDEEYDDEDDDEGESEKEFDNECSDNDCDEVLSQRVI 60
MPERGSKRRV+YL SSSE+DEEES DD+EGESE+EFDNECSDNDCDE+LSQRVI
Sbjct: 1 MPERGSKRRVIYLSSSSEEDEEES-------DDEEGESEEEFDNECSDNDCDELLSQRVI 60
Query: 61 RFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRLQEHWRMKDGNGEVHYPRSSFV 120
RFLKENKNLDSLTL+DCKAYLRENRLRIAGTKAVCIQR+ EHWRMKDGNGE HYPRSSFV
Sbjct: 61 RFLKENKNLDSLTLNDCKAYLRENRLRIAGTKAVCIQRVLEHWRMKDGNGEAHYPRSSFV 120
Query: 121 VNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEV 180
VNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEV
Sbjct: 121 VNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEV 180
Query: 181 LWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERIQVLAEKHKRGAAARGVRALQK 240
LWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAER+QVLAEKHKRGAAARGVRALQK
Sbjct: 181 LWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERVQVLAEKHKRGAAARGVRALQK 240
Query: 241 RKRKLLQIGGSGKNQGRAQLPRQALNSNGSRKSMRSRDKNNAVRRHPA 289
RKRK++Q+GGSGKNQG QLPRQA NSNGSRKSMRSRDKNNAVRRHPA
Sbjct: 241 RKRKVVQMGGSGKNQGHVQLPRQASNSNGSRKSMRSRDKNNAVRRHPA 281
BLAST of CmaCh20G011310 vs. NCBI nr
Match:
XP_038902878.1 (zinc finger CCCH domain-containing protein 62-like [Benincasa hispida])
HSP 1 Score: 440.3 bits (1131), Expect = 1.3e-119
Identity = 240/312 (76.92%), Postives = 256/312 (82.05%), Query Frame = 0
Query: 4 RGSKRRVVYLYSSSEDD-------------------EEESDEEYDDEDDD---------- 63
+ SKRRV+ + SSS+DD + ES+EE+DDEDDD
Sbjct: 3 KSSKRRVICISSSSDDDISCGDDEEKSEEYDDQDDADWESEEEFDDEDDDDGDSEEEFDY 62
Query: 64 ----EGESEKEFDNECSDNDCDEVLSQRVIRFLKENKNLDSLTLHDCKAYLRENRLRIAG 123
EGESE+EFDNE SDNDCDEVLS+RVIRFLKENKNLDSLTL+DCKAYLRENRLRIAG
Sbjct: 63 KDDVEGESEEEFDNEDSDNDCDEVLSERVIRFLKENKNLDSLTLNDCKAYLRENRLRIAG 122
Query: 124 TKAVCIQRLQEHWRMKDGNGEVHYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRRG 183
TKAVCIQR++EHWRMKDGNGE HYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTR G
Sbjct: 123 TKAVCIQRVEEHWRMKDGNGEAHYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRHG 182
Query: 184 GLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRTFRR 243
GLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRTFRR
Sbjct: 183 GLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRTFRR 242
Query: 244 LWNDEAERIQVLAEKHKRGAAARGVRALQKRKRKLLQIGGSGKNQGRAQLPRQALNSNGS 283
LWNDEAER+QVLAEKHKRGAAARG+RA+QK+KRK Q G KNQG L RQ LNS S
Sbjct: 243 LWNDEAERVQVLAEKHKRGAAARGLRAMQKKKRKFPQTRGCAKNQGHVHLARQGLNSKES 302
BLAST of CmaCh20G011310 vs. TAIR 10
Match:
AT5G66840.1 (SAP domain-containing protein )
HSP 1 Score: 237.7 bits (605), Expect = 1.2e-62
Identity = 137/283 (48.41%), Postives = 187/283 (66.08%), Query Frame = 0
Query: 12 YLYSSSEDDEE----ESDEEYDDEDDDEGESEKEFDN---ECSDNDCDEVLSQRVIRFLK 71
Y + E+DE+ E D ++ +DDD ES+ E D + ++D DE +V R L
Sbjct: 28 YDETEEEEDEDTNSSEDDSDWSHDDDDATESDVEADEIGVKGDNDDGDE--DDKVTRLLT 87
Query: 72 ENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRLQEHWRMKDGNGEVHYPRSSFVVNCT 131
+L S+ + +CKAYLR++ LR++GTK VCI R+ EHWR+KDG GE YP+SSF +NC
Sbjct: 88 AGSDLKSVNVKECKAYLRKHGLRLSGTKPVCIDRILEHWRIKDGTGEAVYPKSSFAINCK 147
Query: 132 GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSR 191
GDVC+GD VLFTQKV+ K++K+ + G ++G+RTVAG+VVKESYG +KQQHTFT+EVLW
Sbjct: 148 GDVCKGDIVLFTQKVHHKYEKMKKSGNIMGRRTVAGQVVKESYGTAKQQHTFTIEVLWCE 207
Query: 192 GVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERIQVLAEKHKRGAAARGVRALQKRKRK 251
G +KLPPLYPLLVKGRNLY+L T R+ W +E +R++VL EKH RGAAAR V +K K
Sbjct: 208 GTQKLPPLYPLLVKGRNLYRLMTLRQRWPNEEDRVKVLNEKHNRGAAARKVMRERKIKSG 267
Query: 252 LLQIGGSGKNQGRAQLPRQA-LNSNGSRKSMRSRDKNNAVRRH 287
+ G + G + P Q N +++ R + N H
Sbjct: 268 YVLKDGRLQKPGHVKKPCQVKTRKNEKDENLTQRLRQNTPANH 308
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q338N2 | 1.5e-41 | 39.29 | Zinc finger CCCH domain-containing protein 62 OS=Oryza sativa subsp. japonica OX... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1I2K8 | 1.4e-154 | 100.00 | zinc finger CCCH domain-containing protein 62 isoform X1 OS=Cucurbita maxima OX=... | [more] |
A0A6J1EQD5 | 1.7e-141 | 92.01 | zinc finger CCCH domain-containing protein 62-like OS=Cucurbita moschata OX=3662... | [more] |
A0A0A0LQ19 | 5.6e-116 | 75.75 | SAP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G292810 PE=4 SV... | [more] |
A0A6J1E0C9 | 9.5e-116 | 76.17 | zinc finger CCCH domain-containing protein 62 OS=Momordica charantia OX=3673 GN=... | [more] |
A0A1S4E1S9 | 9.5e-116 | 76.14 | zinc finger CCCH domain-containing protein 62-like isoform X1 OS=Cucumis melo OX... | [more] |
Match Name | E-value | Identity | Description | |
XP_022971662.1 | 2.8e-154 | 100.00 | zinc finger CCCH domain-containing protein 62 isoform X1 [Cucurbita maxima] | [more] |
XP_023512636.1 | 5.6e-147 | 95.85 | zinc finger CCCH domain-containing protein 62 [Cucurbita pepo subsp. pepo] | [more] |
XP_022927980.1 | 3.5e-141 | 92.01 | zinc finger CCCH domain-containing protein 62-like [Cucurbita moschata] | [more] |
KAG6571408.1 | 7.9e-141 | 91.67 | Zinc finger CCCH domain-containing protein 62, partial [Cucurbita argyrosperma s... | [more] |
XP_038902878.1 | 1.3e-119 | 76.92 | zinc finger CCCH domain-containing protein 62-like [Benincasa hispida] | [more] |
Match Name | E-value | Identity | Description | |
AT5G66840.1 | 1.2e-62 | 48.41 | SAP domain-containing protein | [more] |