CmaCh20G008050 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh20G008050
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr20: 3788699 .. 3792500 (+)
RNA-Seq ExpressionCmaCh20G008050
SyntenyCmaCh20G008050
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGACGGAATTTTGGTTTGGATTTGTCATTACAGGATGGTGCGGTTGGGGATGGAGCTTATCTGTTCATGCAATGCCCCTATCGGTTTGCTGTCCACAGACTGCTGTGTGCTGCTCTGTCCAATCTTTTTCAGCCTCAGATTGGTCCTGTGGTCAACAACTGAAAACTGTGCGGTAGAGGTAGATTCCTCTCTTCATGTACATCTCTTTTTATATTCTCATTTAGCTTTAATTTAGAATGGTGATCTGTGGTATATAGGAATAGAAAGCTTAATGGTTTTTTCTCTCTTTTAATATGAAATCTAGAGTAGAGTAATGGGTGAAAAGGCATCACTGTCATGGGTTTGTTGTCTCTTCTGATATATATTTTATGTCGTCTCCCACTGCGTGTTGTCTCTATATATTGATTTCTTTATTATGGATCTGTTTCTTGAAAAAGATTCTCAACTCTTTCCTGATCATCTTAGTGTCGCTAGAAAAAACACGAAAAGATTCTCATCTCTTTCTTAACCATTAGTGTGCGGTGTTATTAGGAAGAAATGATACAGATTCTTATGAACTCTGTGTTTTAATTCACCCTACTACACCACTCCTAGTGCTATTAGGAGAGGGCCATTGTAATGATGTGATTACTAAGCTCTCTTTGTTATCTCTTAGCACTTAAAAAGAGTTCAATTCATACTTTTTGGTATCAATCAATGTCGTTTGGCATCAAGCAGGATCGGTCAATGGATCGTCTTGGGATGAGAGAAATGTCATGCTGCCCTGCATTTGAAATGTTTTGGGATGGAGGGAAAGAGATCATTGGTAAATATTTTATTGTAGACATGTTGTTTCTTTGTCCAAAATTTGATTCTCAACTCTTTCATAATCATCCAAGTGCGTTTGTTATTAGAAAGACGTGAAATGATTATTCTAGGCTCTTCGTTGACCTGACACCATCCTAGTGTGTTTGCTATTAGGAAGACATGATGTTAAGTCTTAAATATAAAAGATTCTTTGCCTCTTTTCTTTTAATCATCTTTCTTATTTTGAAGATGCAATAGATTTTGATGTTATTAGGAACATGTTTTGATCTGTGGAGAAAGAGTGAAATCCCTCTTGTTAGCCAAGCCGATGGCTAACTTGCTCGTGCTATTTATAGCATTCGGGTCAAGGAGGTCAATTACACACGAGCACGAATGGGCAAAGAACATACCTTCTGGTACCGAGCGACCAAGATCACCACCTGAGAGGTTGTTTGAATATTAGCGAAACATACCGACATTGTAGTGAATCGAGTACACACCTCATTCTTTTGAGCTGAATTTTGGTCAGGGCTGGTAAAATGAGTACATGAAGTCTATGGCCTTGGTTGAGTTCAAGCCTCTCAAATATGGTGGGGTGGGCCGAACCCCAACCTTAACTCTGTGCTAATGATCGTTGGGCTCTATTATTTGGTATTGGTTACCAAACATGTTTATGTTTATGTTCGGGTTTCTTTTTTTCCAAGATTCAAGAAATAGAAATAAGGAACAAGAACATGGTCCAATGATCACGGGACAAATATTAATTGAATGTCATTGGATGATCACCACAAAAAGGAAGCTTTAAAATCACATCTAAATCAGTATAGATGAAAATAAGTTGAAAGGTTGGAGAAATTTGATCTAAATTGGATTGGTCAGACCTTACCAGCAAACATGCAATTTATGCAATGTTCCCTTCGACAGTGCATGAAGCTTATACGACGAGGTTGGTGTAGAAGTTGATGGGCATATGATGAGCTTGGATGTTAGGCGAGCAATGGAGAGGTTTAAATTGAGACGAACTTTGGAGACGAGCTATCCAAACTGGTTGCGAATCAAACAAAAATCATCTTGTAGATGAGTTTTTTCGAACATATGAACAATCAATAAAAAAAATGACTAAATCTATTTCCAATAATGAAGCAAATCAAGAAAGAATTGATAAAACAAATCAAAGTTTCATTTACTTTATTTCAACTATAAAAAAGTCACTTTCCAATATTAGTAATAAGAATAGAAAGGTCTTTGGGGACTTATCATACTTGTCACAAGCATATTTATTTTACAAATTATCACAAACCCAACTTATTAACTTATCTAAGTTAAGACCTATGTTTCAATATCACGGAACATCTCTTTTTCTTAAAAATGAAATACAGGATTATTTTGGTAAAGTTGTTGGAAAAGATCGAGTGAACAACAATGAGTGTATCAAAGAACGAGTGAACAACAATGAGTGTATCAAAGAGTGAACAATAAAAGAGTGTGCGCTAAACTATTAGTGGCGGTTAAGAAGTTACATCATTCCAAATAGGAACTTGTCAATCCATGGGTACACCATGAAGTTACAAATGTTGTACTTGTAAACCAACCTCACACGGCAAAATAGGCACAAGGAAGGAGCAATAGATCAGACCAACCTACAAAAACGAAACAGTCCCTCTGTAACCAGTCATCCATAATATTGAATAAATCATTTTCGTCTTTGGCTATAGTTATAGTGATCCTCTTATTCAACTAACTTCAACCATTTTCGAACACCTCATCGATTAATATTACTGAACTAATACTGATTTCTCTCTTCCTTTTAATGGGTTTCGAATATAAAAATCATTTTTTTATTGGTCCATAACTTCAAAGGAATAATGAGAATGAGCGAGAGAGGAGGATAGTTGACTACACTAAGCTTGTAGTCATGTGTTTATAATTTTTGAATCTGTTTTATGTACGTGCTTTTTTTTTTAATTGTGAATAGTATGTGTGATTGTGTTAACATAGTTTTGTGCTGATTGTATTCATTTGAGTGATTCGATTCGTGTATTCATTCGAGTCATTGAGCGGTTGATTCTTCTCTCTCTCCTCTCTCATTCAAACTTATTTTTCTTCTTAATTTCATCTACAACATTGTTTTCACACTTTCATGATCATATAGTGCAATTTATTTTGGTCAACTAAATAGCATTCTTTACCGACATAAATTATAAACACATCAATGACCCCAAAAGTACATTTCATGTACCTTTTCTAGATCGTGCTAGAAAGTATCCTGTTCAACCTTTCCAATAAAAAAATTGTCATAATTGATTGTAGATCAACAATGACTGTTTAAGATGAATCATCCATTACTAAACCATTGTAGAATGACAGACTTATTATAGTTGATTCAGAGTCTTCCTTCAATGTCTAATATTCAGATTAGTAGTTTGAGCAATTTTTCATCATAAAATTGATTTTCACTATTTCAAAACCATATCCCATCCATGCTCAACTTTTTAAGAGCACCGATGCCCAATAAAAATGAAATTAGCTTCTCAATTGCTAAAACATTTCCTATTTATTTAAACATCTGATGCAATGACAAGCAATCAGGCAAACCGCTCATCCTGCAAAGGATGGATAATTAACCAAAAGTTGCAGCATCACACATCGTTCCAATGGTGATTTTTCTGTCAAATTTGCATATCTGAGCAATAATAAGAAGAAAGCAAATCAACAAGGAATCACTATAATTTGTGCTCATTCGAGTTTACACATCAAAGAGCTCGCTTTATCATCATCGACTCTGACGAGCCCACGAACAATTTCAACCTGCAATACTCAAAACGTTGCTTTTCACATTAGAGCTACAAGGAAAAAGTATGTCCAAAACTAGAGTCATTGTATGTTCAAAACTATTGTTGACTGTAATATTGCGTAGATGGTCTGCTTTAGAAACTTCAAAACAACAAACTAACTTTTTCAGAGTATACAAACTTCTTTCGCTTCTCAAGATTCACTCCGCTTTACCATAA

mRNA sequence

ATGGGGGACGGAATTTTGGTTTGGATTTGTCATTACAGGATGGTGCGGTTGGGGATGGAGCTTATCTGTTCATGCAATGCCCCTATCGGTTTGCTGTCCACAGACTGCTGTGTGCTGCTCTGTCCAATCTTTTTCAGCCTCAGATTGGTCCTGTGGTCAACAACTGAAAACTGTGCGGTAGAGGATCGGTCAATGGATCGTCTTGGGATGAGAGAAATGTCATGCTGCCCTGCATTTGAAATGTTTTGGGATGGAGGGAAAGAGATCATTGCATTCGGGTCAAGGAGGTCAATTACACACGAGCACGAATGGGCAAAGAACATACCTTCTGGTACCGAGCGACCAAGATCACCACCTGAGAGTTGCAGCATCACACATCGTTCCAATGGTGATTTTTCTGTCAAATTTGCATATCTGAGCAATAATAAGAAGAAAGCAAATCAACAAGGAATCACTATAATTTGTGCTCATTCGAGTTTACACATCAAAGAGCTCGCTTTATCATCATCGACTCTGACGAGCCCACGAACAATTTCAACCTGCAATACTCAAAACGTTGCTTTTCACATTAGAGCTACAAGGAAAAAATGGTCTGCTTTAGAAACTTCAAAACAACAAACTAACTTTTTCAGAGTATACAAACTTCTTTCGCTTCTCAAGATTCACTCCGCTTTACCATAA

Coding sequence (CDS)

ATGGGGGACGGAATTTTGGTTTGGATTTGTCATTACAGGATGGTGCGGTTGGGGATGGAGCTTATCTGTTCATGCAATGCCCCTATCGGTTTGCTGTCCACAGACTGCTGTGTGCTGCTCTGTCCAATCTTTTTCAGCCTCAGATTGGTCCTGTGGTCAACAACTGAAAACTGTGCGGTAGAGGATCGGTCAATGGATCGTCTTGGGATGAGAGAAATGTCATGCTGCCCTGCATTTGAAATGTTTTGGGATGGAGGGAAAGAGATCATTGCATTCGGGTCAAGGAGGTCAATTACACACGAGCACGAATGGGCAAAGAACATACCTTCTGGTACCGAGCGACCAAGATCACCACCTGAGAGTTGCAGCATCACACATCGTTCCAATGGTGATTTTTCTGTCAAATTTGCATATCTGAGCAATAATAAGAAGAAAGCAAATCAACAAGGAATCACTATAATTTGTGCTCATTCGAGTTTACACATCAAAGAGCTCGCTTTATCATCATCGACTCTGACGAGCCCACGAACAATTTCAACCTGCAATACTCAAAACGTTGCTTTTCACATTAGAGCTACAAGGAAAAAATGGTCTGCTTTAGAAACTTCAAAACAACAAACTAACTTTTTCAGAGTATACAAACTTCTTTCGCTTCTCAAGATTCACTCCGCTTTACCATAA

Protein sequence

MGDGILVWICHYRMVRLGMELICSCNAPIGLLSTDCCVLLCPIFFSLRLVLWSTTENCAVEDRSMDRLGMREMSCCPAFEMFWDGGKEIIAFGSRRSITHEHEWAKNIPSGTERPRSPPESCSITHRSNGDFSVKFAYLSNNKKKANQQGITIICAHSSLHIKELALSSSTLTSPRTISTCNTQNVAFHIRATRKKWSALETSKQQTNFFRVYKLLSLLKIHSALP
Homology
[Close]
BLAST of CmaCh20G008050 vs. ExPASy TrEMBL
Match: A0A6J1JBS2 (uncharacterized protein LOC111484319 OS=Cucurbita maxima OX=3661 GN=LOC111484319 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 5.6e-47
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 1  MGDGILVWICHYRMVRLGMELICSCNAPIGLLSTDCCVLLCPIFFSLRLVLWSTTENCAV 60
          MGDGILVWICHYRMVRLGMELICSCNAPIGLLSTDCCVLLCPIFFSLRLVLWSTTENCAV
Sbjct: 1  MGDGILVWICHYRMVRLGMELICSCNAPIGLLSTDCCVLLCPIFFSLRLVLWSTTENCAV 60

Query: 61 EDRSMDRLGMREMSCCPAFEMFWDGGKEII 91
          EDRSMDRLGMREMSCCPAFEMFWDGGKEII
Sbjct: 61 EDRSMDRLGMREMSCCPAFEMFWDGGKEII 90

[Close]
BLAST of CmaCh20G008050 vs. NCBI nr
Match: XP_022986641.1 (uncharacterized protein LOC111484319 [Cucurbita maxima])

HSP 1 Score: 197.6 bits (501), Expect = 1.2e-46
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 1  MGDGILVWICHYRMVRLGMELICSCNAPIGLLSTDCCVLLCPIFFSLRLVLWSTTENCAV 60
          MGDGILVWICHYRMVRLGMELICSCNAPIGLLSTDCCVLLCPIFFSLRLVLWSTTENCAV
Sbjct: 1  MGDGILVWICHYRMVRLGMELICSCNAPIGLLSTDCCVLLCPIFFSLRLVLWSTTENCAV 60

Query: 61 EDRSMDRLGMREMSCCPAFEMFWDGGKEII 91
          EDRSMDRLGMREMSCCPAFEMFWDGGKEII
Sbjct: 61 EDRSMDRLGMREMSCCPAFEMFWDGGKEII 90

[Close]
BLAST of CmaCh20G008050 vs. NCBI nr
Match: XP_023511799.1 (uncharacterized protein LOC111776708 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 166.4 bits (420), Expect = 2.9e-37
Identity = 76/80 (95.00%), Postives = 78/80 (97.50%), Query Frame = 0 

Query: 1   MGDGILVWICHYRMVRLGMELICSCNAPIGLLSTDCCVLLCPIFFSLRLVLWSTTENCAV 60
           +G GILVWICHYRMVRLGMELICSCNAPIGLLSTDCCVLLCPIFFSLRLVLWSTT NCAV
Sbjct: 21  LGAGILVWICHYRMVRLGMELICSCNAPIGLLSTDCCVLLCPIFFSLRLVLWSTTGNCAV 80

Query: 61  EDRSMDRLGMREMSCCPAFE 81
           EDRSMDRLGMRE+SCCPAFE
Sbjct: 81  EDRSMDRLGMREVSCCPAFE 100

[Close]
BLAST of CmaCh20G008050 vs. NCBI nr
Match: KAG6571073.1 (hypothetical protein SDJN03_29988, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 141.4 bits (355), Expect = 9.9e-30
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 0 

Query: 14 MVRLGMELICSCNAPIGLLSTDCCVLLCPIFFSLRLVLWSTTENCAVEDRSMDRLGMREM 73
          MVRLGMELICSCNAPIGLLSTDCCVLLCPIFFSLRLVLWSTT NCAVEDRSMDRLGMREM
Sbjct: 1  MVRLGMELICSCNAPIGLLSTDCCVLLCPIFFSLRLVLWSTTGNCAVEDRSMDRLGMREM 60

Query: 74 SCCPAFE 81
          SCCPAFE
Sbjct: 61 SCCPAFE 67

The following BLAST results are available for this feature:
BLAST of CmaCh20G008050 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh20G008050 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JBS25.6e-47100.00uncharacterized protein LOC111484319 OS=Cucurbita maxima OX=3661 GN=LOC111484319... [more]
BLAST of CmaCh20G008050 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022986641.11.2e-46100.00uncharacterized protein LOC111484319 [Cucurbita maxima][more]
XP_023511799.12.9e-3795.00uncharacterized protein LOC111776708 [Cucurbita pepo subsp. pepo][more]
KAG6571073.19.9e-3098.51hypothetical protein SDJN03_29988, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmaCh20G008050 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 106..126

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh20G008050.1CmaCh20G008050.1mRNA