CmaCh20G007890 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh20G007890
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	40S ribosomal protein S12
Location	Cma_Chr20: 3713201 .. 3716382 (+)
RNA-Seq Expression	CmaCh20G007890
Synteny	CmaCh20G007890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCACATGGGTTGCTCATTTGAACCAATTTATGGTAAGGTGGCCCCATCAGCCACAGCATATGGAGCTCATATTCTTGACAAAGTGGGTCGCAGATACTTGGAGGTACTTCCAAATAGCATTACAACCATGTCAAGAAAACTAGATATTGCCCCAATAAAGGCTTGGCGTCGCCCAACACTTGGCACAAATTTGGGGGCTGATATCTCCACATCCACAAAATTCTTGTTTGTGGCCGAGGGGGAAAATGAGTTGGAACAAAATTAGCTATGTAAAAGTTGGTACACACTTGGAGCGTTTATGTTTGGAATGTGCGGCGTAGACACTGCAAATAATTTACTAATATAAGGTAGGATGATCTTGTAGACGCCTTATTACATAATTGAAGGGACACATTTTGAGCGAGCGAGTTTTCTCTGGAGCGGTTGATTAGCAAGTCTGCTGTCTCCACGGCTTTTTCCTTTATCGTGAGTTAGATTGAATCGAGACATTTTTTAGACTTAATTTAATTATTTGATTTGTAAATTTTTTATCCTAAATTATTCTCCAATCCGACCCAAATATATTGGATATTAATTCAAATTTTTATTTTTAAAATATTTATTTGTTAAACATTTACTATTTATTTTTAAACCTTTAATGAAGGTTTGCAAGGTATATATGGAAAATAAATAATTAAAAAAAGAATTATGAAATTAAATAAAAATAATATATATATAATTATAATTATAATATAAGTAAAAATGGGGTTCAAGTTTAACCCAATTTAATTTTAGTGGAACTCATAAATTAATTTCATCCATAAATTTTCATTTATTTCGGCCTCTTTTTATTATTATCGTTTGAAAAAAAAATTAAGTTATTTATTTTATTTTTGAATCTTAGATTTTGCATTAAATTTTAATTAATATTAATTAGTTTTGATTGTGTTACTGGTTGTTGTTTTTTTTTTTCCTCCTTAAATCTTAAATTTTGTATAAATTTTAAATTAACATTTAGATTTTATAATTTTGTAAGTTGTTGTATTTCAAATATTTTTCCCATTACTTGTTTTGATTTTTTTTATATAAAATATTTGTTAAAAATACTCAAAAATTACAGGATTTTTTGGGCAGGTATTTTCGTTGGCTTATTTAAAATAACCAATAATCTTTTTTTTTTTTTTTTAATAAAAAGTCCTAAAAACCGAACCAAAATCGATCGATTCAAACCGGTTTATATAGAAAGTTAACTCAGCCGTCGGTTTGCTGACCGAATATTATGGTTCGTTTCTCGACCGAACCAAACCGAACAGGGCTAGGTCTCCAACCCAGAAGTAGGGTTTTTCCATCGGCGCATTTTATCCGCACTTCTTCTTCATAAAACCCCCACTTCTTGACCTAATTCGCTGCGCCGTTGATCTCCGGTTCGATCAGTTTCTACGCTGTTCTCAAGTCATCTTCTATACTTATCCTTCCTCTCTTCTTCTTCGTAAATGCCTCTGTTCATATTGTTTGCTTCCTTTTTCTGATTATTGTTTTGCGTTTGTGTACAACAGGAAGAAGAAAAGAGCTTCAAATCAAGAAGAAAAATGTCAGCGTGAGTAGAAACCTGTTTATTTTACTGGCTGCTAACTTTCCCCTTAAATTCTCATGGTTGTTTTTATTTTGAAGTTGTTGAATGCCTGCCCGTTCTTTCGTTCTTTCTATTGCCTCATTTGTGTATTAGTTATTGGCGATGCCTTGTAATCAATTATTCGAATGCCCACTATTTTGGAGTGTGAATATGCAAAAGGCTGTGAATGGTAACTTGTTTTGGGCTTAGGCCATATAGAATACGTGATTCGTGTGTGGATTGATAGATAGTGACTGAGGAGCCAAGATCTTTATTGTTCCTGTCTAGCAGTGAATTAGTATTGAGATTTCTGTTGTTGTTGGCTTTGTAGTTGCTGCGAATGGTCATGTATTTCCCTCAATTGCCTGATTAACTAAATTTCTTATGCAGTGATGAAGGTGCAGTTGTTATCGAGGCTCCGGCCCCAGCTCTAGGTGAGCCGATGGACATTGAGACTGCTTTGCAGCTTGTTCTTAGAAAATCATTAGCTCATGGTGGGCTTGTTCGAGGCCTACATGAGAGTGCTAAAGCAATTGAGAAGCATGCTGCTCAGCTTTGCGTCTTGGGAGAAGACTGCAACCAGCCAGATTACGTTAAACTAGTCAAGGCACTTTGTGCAGAGCACAATGTGAACTTGATGACAGTTCCAAGTGCAAAGACCCTTGGCGAGTGGGCTGGTGTAAGTGTTTATTCTATCTAGCCATGGAGATAAAATTGGTTTAACTTTTGCTGGGTTTTTTACTATGATTGAACCTATACCTGTCAATGTTTGGCTAAATGTTCTTACCTTTTGATACTTAAACATGATTCAATCTCTTCATGTAGAACAAAAAAGCCTTTCTTTTCCCCTCCTGTTTCCCGCCTAACACATCACCATTGGGAGAATTTCTTTTTTCTTGTAATATTTGCATTCTACATCATATGCTTGATTTTAGTTTCAAGATGCAACTAATATGTGTGTGTATACCAGCACTACTACCAAATGCTTTCCCTCGTCTGAGTTCACGATAAATATGCGCATTCATTTTCTTCACATTTGGTCTAATGCAGCTATGCAAGATTGATTCTGAAGGAAAGGCTAGGAAGGTCGTCGGGTGCTCATGCGTTGTTGTTAAGGTACGTTGTGTGTCCATTGCCTATGGAGAAGATGATCTATTCCATGTTCTTTTGTTTTCAATACAATTTATGTTGTTTACTTGAATTTTGAATCTCTACCCCCAGGACTTTGGGGAGGATCATGAGGCACTTCACATTGTCCAGAAGCACGTGAGTTCAAGTTGATTATTACAATGGTGTTTGTTGGTGTCAGTAAGAAAGTTTTTGATCTTTAGTTATGCGTAGGTTGGTTCCCTGTTGCTGCTGAACACGTTTTTACCCTATAATGTTTTTCTTTGTTCATTGATTGGAAAGATTTTTGGCAAACAGAACACAATTTATTTATGAAGAGAGTCTCCTTGCCAAGGGTAAAAGGGAATTGATTTTTTTTATATCATCTATTTACTAGTTATTAAGATTTACCTATTTCTGTTCTTTATGGAGGATAATGCAAGTCTTCCTTAGTTATTTTAACTACAAAGCTCAGGCCA

mRNA sequence

ATGGCTCACATGGGTTGCTCATTTGAACCAATTTATGGTAAGGTGGCCCCATCAGCCACAGCATATGGAGCTCATATTCTTGACAAAGTGGGTCGCAGATACTTGGAGGAAGAAGAAAAGAGCTTCAAATCAAGAAGAAAAATGTCAGCTGATGAAGGTGCAGTTGTTATCGAGGCTCCGGCCCCAGCTCTAGGTGAGCCGATGGACATTGAGACTGCTTTGCAGCTTGTTCTTAGAAAATCATTAGCTCATGGTGGGCTTGTTCGAGGCCTACATGAGAGTGCTAAAGCAATTGAGAAGCATGCTGCTCAGCTTTGCGTCTTGGGAGAAGACTGCAACCAGCCAGATTACGTTAAACTAGTCAAGGCACTTTGTGCAGAGCACAATGTGAACTTGATGACAGTTCCAAGTGCAAAGACCCTTGGCGAGTGGGCTGGTCTATGCAAGATTGATTCTGAAGGAAAGGCTAGGAAGGTCGTCGGGTGCTCATGCGTTGTTGTTAAGGACTTTGGGGAGGATCATGAGGCACTTCACATTGTCCAGAAGCACGTGAGTTCAAGTTGATTATTACAATGGTGTTTGTTGGTGTCAGTAAGAAAGTTTTTGATCTTTAGTTATGCGTAGGTTGGTTCCCTGTTGCTGCTGAACACGTTTTTACCCTATAATGTTTTTCTTTGTTCATTGATTGGAAAGATTTTTGGCAAACAGAACACAATTTATTTATGAAGAGAGTCTCCTTGCCAAGGGTAAAAGGGAATTGATTTTTTTTATATCATCTATTTACTAGTTATTAAGATTTACCTATTTCTGTTCTTTATGGAGGATAATGCAAGTCTTCCTTAGTTATTTTAACTACAAAGCTCAGGCCA

Coding sequence (CDS)

ATGGCTCACATGGGTTGCTCATTTGAACCAATTTATGGTAAGGTGGCCCCATCAGCCACAGCATATGGAGCTCATATTCTTGACAAAGTGGGTCGCAGATACTTGGAGGAAGAAGAAAAGAGCTTCAAATCAAGAAGAAAAATGTCAGCTGATGAAGGTGCAGTTGTTATCGAGGCTCCGGCCCCAGCTCTAGGTGAGCCGATGGACATTGAGACTGCTTTGCAGCTTGTTCTTAGAAAATCATTAGCTCATGGTGGGCTTGTTCGAGGCCTACATGAGAGTGCTAAAGCAATTGAGAAGCATGCTGCTCAGCTTTGCGTCTTGGGAGAAGACTGCAACCAGCCAGATTACGTTAAACTAGTCAAGGCACTTTGTGCAGAGCACAATGTGAACTTGATGACAGTTCCAAGTGCAAAGACCCTTGGCGAGTGGGCTGGTCTATGCAAGATTGATTCTGAAGGAAAGGCTAGGAAGGTCGTCGGGTGCTCATGCGTTGTTGTTAAGGACTTTGGGGAGGATCATGAGGCACTTCACATTGTCCAGAAGCACGTGAGTTCAAGTTGA

Protein sequence

MAHMGCSFEPIYGKVAPSATAYGAHILDKVGRRYLEEEEKSFKSRRKMSADEGAVVIEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS

Homology

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BLAST of CmaCh20G007890 vs. ExPASy Swiss-Prot
Match: Q9XHS0 (40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 3.1e-56
Identity = 103/130 (79.23%), Postives = 120/130 (92.31%), Query Frame = 0


Query: 57  IEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPD 116
           +EAP P LGEPMD+ TALQLV++KS AH GLV+GL E+AK+IEKHAAQLCVL EDC+QPD
Sbjct: 13  VEAPTPILGEPMDLMTALQLVMKKSSAHDGLVKGLREAAKSIEKHAAQLCVLAEDCDQPD 72

Query: 117 YVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEA 176
           YVKLVKALCAEHNV+L+TVPSAKTLGEWAGLCKID+EGKARKVVGCSC+VVKD+GE+ E 
Sbjct: 73  YVKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDTEGKARKVVGCSCIVVKDYGEESEG 132

Query: 177 LHIVQKHVSS 187
           L+IVQ++V S
Sbjct: 133 LNIVQQYVKS 142

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BLAST of CmaCh20G007890 vs. ExPASy Swiss-Prot
Match: Q9SKZ3 (40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 3.9e-51
Identity = 99/144 (68.75%), Postives = 116/144 (80.56%), Query Frame = 0


Query: 48  MSADEGAVVIEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 107
           MS DE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 108 QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 167
           QLCVL EDCNQPDYVKLVKALCA+H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 168 CVVVKDFGEDHEALHIVQKHVSSS 188
           C+V+KDFGE+  AL+IV+KH+ S+
Sbjct: 121 CLVIKDFGEETTALNIVKKHLDSN 144

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BLAST of CmaCh20G007890 vs. ExPASy Swiss-Prot
Match: Q9S9P1 (40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.9e-50
Identity = 101/143 (70.63%), Postives = 114/143 (79.72%), Query Frame = 0


Query: 48  MSADEGAVVIEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 107
           MS DE A V+  P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  A
Sbjct: 1   MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 108 QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 167
           QL VL EDCNQPDYVKLVKALCA+H V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 168 CVVVKDFGEDHEALHIVQKHVSS 187
           C+VVKDFGE+  AL IV KH++S
Sbjct: 121 CLVVKDFGEETTALSIVNKHIAS 143

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BLAST of CmaCh20G007890 vs. ExPASy Swiss-Prot
Match: Q76I81 (40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 7.2e-37
Identity = 71/121 (58.68%), Postives = 93/121 (76.86%), Query Frame = 0


Query: 63  ALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVK 122
           A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 123 ALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQK 182
           ALCAEH +NL+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G++ +A  ++++
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEE 126

Query: 183 H 184
           +
Sbjct: 127 Y 127

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BLAST of CmaCh20G007890 vs. ExPASy Swiss-Prot
Match: P25398 (40S ribosomal protein S12 OS=Homo sapiens OX=9606 GN=RPS12 PE=1 SV=3)

HSP 1 Score: 155.2 bits (391), Expect = 7.2e-37
Identity = 71/121 (58.68%), Postives = 93/121 (76.86%), Query Frame = 0


Query: 63  ALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVK 122
           A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 123 ALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQK 182
           ALCAEH +NL+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G++ +A  ++++
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEE 126

Query: 183 H 184
           +
Sbjct: 127 Y 127

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BLAST of CmaCh20G007890 vs. ExPASy TrEMBL
Match: A0A6J1JGV5 (40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111484389 PE=3 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 8.4e-73
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 48  MSADEGAVVIEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 107
           MSADEGAVVIEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVIEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 108 LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 167
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 168 KDFGEDHEALHIVQKHVSSS 188
           KDFGEDHEALHIVQKHVSSS
Sbjct: 121 KDFGEDHEALHIVQKHVSSS 140

[Close]

BLAST of CmaCh20G007890 vs. ExPASy TrEMBL
Match: A0A6J1FU69 (40S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111448818 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.4e-72
Identity = 138/140 (98.57%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 48  MSADEGAVVIEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 107
           MSADEGAV++EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVLVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 108 LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 167
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 168 KDFGEDHEALHIVQKHVSSS 188
           KDFGEDHEALHIVQKHVSSS
Sbjct: 121 KDFGEDHEALHIVQKHVSSS 140

[Close]

BLAST of CmaCh20G007890 vs. ExPASy TrEMBL
Match: A0A6J1KYK1 (40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111497545 PE=3 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 3.2e-72
Identity = 137/140 (97.86%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 48  MSADEGAVVIEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 107
           MSADEGAVV+EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 108 LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 167
           LGEDCNQPDY+KLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYIKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 168 KDFGEDHEALHIVQKHVSSS 188
           KDFGEDHEALHIVQKHVSS+
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of CmaCh20G007890 vs. ExPASy TrEMBL
Match: A0A6J1G761 (40S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111451391 PE=3 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 4.2e-72
Identity = 138/140 (98.57%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 48  MSADEGAVVIEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 107
           MSADEGAVV+EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 108 LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 167
           LGEDCNQPDYVKLVKALCAEH+VNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 168 KDFGEDHEALHIVQKHVSSS 188
           KDFGEDHEALHIVQKHVSSS
Sbjct: 121 KDFGEDHEALHIVQKHVSSS 140

[Close]

BLAST of CmaCh20G007890 vs. ExPASy TrEMBL
Match: A0A5D3BJY5 (40S ribosomal protein S12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001870 PE=3 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 7.1e-72
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 48  MSADEGAVVIEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 107
           MSADEGAVV EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 108 LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 167
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 168 KDFGEDHEALHIVQKHVSSS 188
           KDFGEDHEALHIVQKHVSS+
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of CmaCh20G007890 vs. NCBI nr
Match: KAG6571063.1 (40S ribosomal protein S12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 363.2 bits (931), Expect = 1.3e-96
Identity = 179/187 (95.72%), Postives = 183/187 (97.86%), Query Frame = 0


Query: 1   MAHMGCSFEPIYGKVAPSATAYGAHILDKVGRRYLEEEEKSFKSRRKMSADEGAVVIEAP 60
           MAHMGCSFEPIYGK+APSAT Y AHIL+KVGRRYLEE  K+FKSRRKMSADEGAVV+EAP
Sbjct: 1   MAHMGCSFEPIYGKLAPSATTYEAHILNKVGRRYLEEGVKNFKSRRKMSADEGAVVVEAP 60

Query: 61  APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKL 120
           APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKL
Sbjct: 61  APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKL 120

Query: 121 VKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIV 180
           VKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIV
Sbjct: 121 VKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIV 180

Query: 181 QKHVSSS 188
           QKHVSSS
Sbjct: 181 QKHVSSS 187

[Close]

BLAST of CmaCh20G007890 vs. NCBI nr
Match: XP_022986724.1 (40S ribosomal protein S12-like [Cucurbita maxima])

HSP 1 Score: 283.1 bits (723), Expect = 1.7e-72
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 48  MSADEGAVVIEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 107
           MSADEGAVVIEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVIEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 108 LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 167
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 168 KDFGEDHEALHIVQKHVSSS 188
           KDFGEDHEALHIVQKHVSSS
Sbjct: 121 KDFGEDHEALHIVQKHVSSS 140

[Close]

BLAST of CmaCh20G007890 vs. NCBI nr
Match: XP_023512603.1 (40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 282.7 bits (722), Expect = 2.3e-72
Identity = 139/140 (99.29%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 48  MSADEGAVVIEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 107
           MSADEGAVV+EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 108 LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 167
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 168 KDFGEDHEALHIVQKHVSSS 188
           KDFGEDHEALHIVQKHVSSS
Sbjct: 121 KDFGEDHEALHIVQKHVSSS 140

[Close]

BLAST of CmaCh20G007890 vs. NCBI nr
Match: XP_038901505.1 (40S ribosomal protein S12-like [Benincasa hispida])

HSP 1 Score: 281.6 bits (719), Expect = 5.1e-72
Identity = 138/140 (98.57%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 48  MSADEGAVVIEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 107
           MSADEGAVV+EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 108 LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 167
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 168 KDFGEDHEALHIVQKHVSSS 188
           KDFGEDHEALHIVQKHVSS+
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of CmaCh20G007890 vs. NCBI nr
Match: XP_022944351.1 (40S ribosomal protein S12-like [Cucurbita moschata])

HSP 1 Score: 281.6 bits (719), Expect = 5.1e-72
Identity = 138/140 (98.57%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 48  MSADEGAVVIEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 107
           MSADEGAV++EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVLVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 108 LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 167
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 168 KDFGEDHEALHIVQKHVSSS 188
           KDFGEDHEALHIVQKHVSSS
Sbjct: 121 KDFGEDHEALHIVQKHVSSS 140

[Close]

BLAST of CmaCh20G007890 vs. TAIR 10
Match: AT2G32060.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 202.6 bits (514), Expect = 2.8e-52
Identity = 99/144 (68.75%), Postives = 116/144 (80.56%), Query Frame = 0


Query: 48  MSADEGAVVIEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 107
           MS DE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 108 QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 167
           QLCVL EDCNQPDYVKLVKALCA+H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 168 CVVVKDFGEDHEALHIVQKHVSSS 188
           C+V+KDFGE+  AL+IV+KH+ S+
Sbjct: 121 CLVIKDFGEETTALNIVKKHLDSN 144

[Close]

BLAST of CmaCh20G007890 vs. TAIR 10
Match: AT2G32060.3 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 202.6 bits (514), Expect = 2.8e-52
Identity = 99/144 (68.75%), Postives = 116/144 (80.56%), Query Frame = 0


Query: 48  MSADEGAVVIEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 107
           MS DE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 108 QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 167
           QLCVL EDCNQPDYVKLVKALCA+H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 168 CVVVKDFGEDHEALHIVQKHVSSS 188
           C+V+KDFGE+  AL+IV+KH+ S+
Sbjct: 121 CLVIKDFGEETTALNIVKKHLDSN 144

[Close]

BLAST of CmaCh20G007890 vs. TAIR 10
Match: AT2G32060.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 202.6 bits (514), Expect = 2.8e-52
Identity = 99/144 (68.75%), Postives = 116/144 (80.56%), Query Frame = 0


Query: 48  MSADEGAVVIEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 107
           MS DE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 108 QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 167
           QLCVL EDCNQPDYVKLVKALCA+H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 168 CVVVKDFGEDHEALHIVQKHVSSS 188
           C+V+KDFGE+  AL+IV+KH+ S+
Sbjct: 121 CLVIKDFGEETTALNIVKKHLDSN 144

[Close]

BLAST of CmaCh20G007890 vs. TAIR 10
Match: AT1G15930.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 200.3 bits (508), Expect = 1.4e-51
Identity = 101/143 (70.63%), Postives = 114/143 (79.72%), Query Frame = 0


Query: 48  MSADEGAVVIEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 107
           MS DE A V+  P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  A
Sbjct: 1   MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 108 QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 167
           QL VL EDCNQPDYVKLVKALCA+H V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 168 CVVVKDFGEDHEALHIVQKHVSS 187
           C+VVKDFGE+  AL IV KH++S
Sbjct: 121 CLVVKDFGEETTALSIVNKHIAS 143

[Close]

BLAST of CmaCh20G007890 vs. TAIR 10
Match: AT1G15930.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 200.3 bits (508), Expect = 1.4e-51
Identity = 101/143 (70.63%), Postives = 114/143 (79.72%), Query Frame = 0


Query: 48  MSADEGAVVIEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 107
           MS DE A V+  P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  A
Sbjct: 1   MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 108 QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 167
           QL VL EDCNQPDYVKLVKALCA+H V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 168 CVVVKDFGEDHEALHIVQKHVSS 187
           C+VVKDFGE+  AL IV KH++S
Sbjct: 121 CLVVKDFGEETTALSIVNKHIAS 143

The following BLAST results are available for this feature:

BLAST of CmaCh20G007890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XHS0	3.1e-56	79.23	40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1	[more]
Q9SKZ3	3.9e-51	68.75	40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1	[more]
Q9S9P1	1.9e-50	70.63	40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1	[more]
Q76I81	7.2e-37	58.68	40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1	[more]
P25398	7.2e-37	58.68	40S ribosomal protein S12 OS=Homo sapiens OX=9606 GN=RPS12 PE=1 SV=3	[more]

BLAST of CmaCh20G007890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JGV5	8.4e-73	100.00	40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111484389 PE=3 SV=1	[more]
A0A6J1FU69	2.4e-72	98.57	40S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111448818 PE=3 SV=...	[more]
A0A6J1KYK1	3.2e-72	97.86	40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111497545 PE=3 SV=1	[more]
A0A6J1G761	4.2e-72	98.57	40S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111451391 PE=3 SV=...	[more]
A0A5D3BJY5	7.1e-72	98.57	40S ribosomal protein S12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of CmaCh20G007890 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571063.1	1.3e-96	95.72	40S ribosomal protein S12, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022986724.1	1.7e-72	100.00	40S ribosomal protein S12-like [Cucurbita maxima]	[more]
XP_023512603.1	2.3e-72	99.29	40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo]	[more]
XP_038901505.1	5.1e-72	98.57	40S ribosomal protein S12-like [Benincasa hispida]	[more]
XP_022944351.1	5.1e-72	98.57	40S ribosomal protein S12-like [Cucurbita moschata]	[more]

BLAST of CmaCh20G007890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32060.1	2.8e-52	68.75	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT2G32060.3	2.8e-52	68.75	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT2G32060.2	2.8e-52	68.75	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G15930.2	1.4e-51	70.63	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G15930.1	1.4e-51	70.63	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000530	Ribosomal protein S12e	PRINTS	PR00972	RIBSOMALS12E	coord: 91..107 score: 48.13 coord: 132..153 score: 57.85 coord: 157..170 score: 81.17 coord: 77..90 score: 54.55
IPR000530	Ribosomal protein S12e	PANTHER	PTHR11843	40S RIBOSOMAL PROTEIN S12	coord: 51..186
IPR000530	Ribosomal protein S12e	PROSITE	PS01189	RIBOSOMAL_S12E	coord: 73..91
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 73..166 e-value: 1.8E-27 score: 94.9
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 55..187 e-value: 3.3E-54 score: 183.8
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 66..184
None	No IPR available	PANTHER	PTHR11843:SF20	40S RIBOSOMAL PROTEIN S12	coord: 51..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh20G007890.1	CmaCh20G007890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome