CmaCh20G007440 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh20G007440
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr20: 3494198 .. 3494755 (+)
RNA-Seq ExpressionCmaCh20G007440
SyntenyCmaCh20G007440
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATAAAGCTTAGTGATGGATTTTGGTATTTTATTGTTCATCACAAGCAAGAAATTAAGTTGTTGGTATAAATCATCGTTGGAAAATCCGGTTGAAGAAAAGCATCGTCGGAGAAAATTTTTAACTAATCGTGGTGTCAACTGGGGAAAGGACTCGTCGTCGAACGCCGTTGGAGCTCGCCAGAAAGCTTCAGTAAGTTTTGGGCTCTGTTTTTTCTCTCTGTTTCCAGCCGAATACCTCTGATAGGTCGCCACCTCCTTCACCTCAGATTCGCCTCATTGTTTACAATGCGTTGAATGAGCAGTCATGGCCGAGCGTTGAATCATGTCGCCGGGAGAACTAAAAATCCAGAAAATCAGAGGTAAGCGCAGTTCAGTCGGACCGATTCGGTTCAATTCGATGAGTTCAATCTGTTTCTTTTCGTTTTCTGAGTCGATTTCAACTCTACCAATAATCTCCTATCATAAGGTTCATAGAATCAATCTATTGTAAGGAAAAAGAAGATCGGATCTTTGCAAGTACAGTGAAATCAAATGAATAACGAAGTGGAAGAACTTAG

mRNA sequence

AATAAAGCTTAGTGATGGATTTTGGTATTTTATTGTTCATCACAAGCAAGAAATTAAGTTGTTGGTATAAATCATCGTTGGAAAATCCGGTTGAAGAAAAGCATCGTCGGAGAAAATTTTTAACTAATCGTGGTGTCAACTGGGGAAAGGACTCGTCGTCGAACGCCGTTGGAGCTCGCCAGAAAGCTTCAATTCGCCTCATTGTTTACAATGCGTTGAATGAGCAGTCATGGCCGAGCGTTGAATCATGTCGCCGGGAGAACTAAAAATCCAGAAAATCAGAGGTAAGCGCAGTTCAGTCGGACCGATTCGGTTCAATTCGATGAGTTCAATCTGTTTCTTTTCGTTTTCTGAGTCGATTTCAACTCTACCAATAATCTCCTATCATAAGGTTCATAGAATCAATCTATTGTAAGGAAAAAGAAGATCGGATCTTTGCAAGTACAGTGAAATCAAATGAATAACGAAGTGGAAGAACTTAG

Coding sequence (CDS)

ATGGATTTTGGTATTTTATTGTTCATCACAAGCAAGAAATTAAGTTGTTGGTATAAATCATCGTTGGAAAATCCGGTTGAAGAAAAGCATCGTCGGAGAAAATTTTTAACTAATCGTGGTGTCAACTGGGGAAAGGACTCGTCGTCGAACGCCGTTGGAGCTCGCCAGAAAGCTTCAATTCGCCTCATTGTTTACAATGCGTTGAATGAGCAGTCATGGCCGAGCGTTGAATCATGTCGCCGGGAGAACTAA

Protein sequence

MDFGILLFITSKKLSCWYKSSLENPVEEKHRRRKFLTNRGVNWGKDSSSNAVGARQKASIRLIVYNALNEQSWPSVESCRREN
Homology
[Close]
BLAST of CmaCh20G007440 vs. NCBI nr
Match: KAG7010844.1 (hypothetical protein SDJN02_27640 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 148.7 bits (374), Expect = 2.3e-32
Identity = 74/83 (89.16%), Postives = 78/83 (93.98%), Query Frame = 0 

Query: 1  MDFGILLFITSKKLSCWYKSSLENPVEEKHRRRKFLTNRGVNWGKDSSSNAVGARQKASI 60
          MDFGIL+FI SKKLS WYKSSLENP +EKHRRRK LTNRGVN GKDSSSNAVGARQKASI
Sbjct: 1  MDFGILMFINSKKLS-WYKSSLENPFQEKHRRRKILTNRGVNRGKDSSSNAVGARQKASI 60

Query: 61 RLIVYNALNEQSWPSVESCRREN 84
          RLIVYNALNEQSWPS+ESCRR+N
Sbjct: 61 RLIVYNALNEQSWPSLESCRRKN 82

[Close]
BLAST of CmaCh20G007440 vs. NCBI nr
Match: KAG6571013.1 (hypothetical protein SDJN03_29928, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 138.7 bits (348), Expect = 2.3e-29
Identity = 69/77 (89.61%), Postives = 73/77 (94.81%), Query Frame = 0 

Query: 7  LFITSKKLSCWYKSSLENPVEEKHRRRKFLTNRGVNWGKDSSSNAVGARQKASIRLIVYN 66
          +FITSKKLS WYKSSLENP +EKHRRRK LTNRGVN GKDSSSNAVGARQKASIRLIVYN
Sbjct: 1  MFITSKKLS-WYKSSLENPFQEKHRRRKILTNRGVNRGKDSSSNAVGARQKASIRLIVYN 60

Query: 67 ALNEQSWPSVESCRREN 84
          ALNEQSWPS+ESCRR+N
Sbjct: 61 ALNEQSWPSLESCRRKN 76

The following BLAST results are available for this feature:
BLAST of CmaCh20G007440 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh20G007440 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh20G007440 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7010844.12.3e-3289.16hypothetical protein SDJN02_27640 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6571013.12.3e-2989.61hypothetical protein SDJN03_29928, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmaCh20G007440 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh20G007440.1CmaCh20G007440.1mRNA