CmaCh20G006540 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh20G006540
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	transcription factor MYB8-like
Location	Cma_Chr20: 3018046 .. 3019747 (+)
RNA-Seq Expression	CmaCh20G006540
Synteny	CmaCh20G006540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCTTGTAAGCTTCTTGGCTCAGCTCATCCCCACTCCACGCGGATTGTGTCTGCTGTCGGATCCTTGTGAAGTTGTTGATTTAAATTCAGTCCCCTATAGCACCACTCCAAGCTCGCTCACCCACTCTCTTGGTGTCTCTGTTGGTGAAGAAAATGGTGCGAGCTCCTGTTGTTGATAAGGATGGAGTGAGGAGAGGTGCGTGGAGCTTTGAAGAAGATGAAAAGCTTAGAGCTTATGTTCAGAGATATGGCCCTTCCAAATGGCGGGAGCTTCCCACGCTTGCAGGTACTCTTATCCATCTTTAGCTACTTATAAACATGGGTTTTTGAAAAGGATTCTGATTTGGGTTTTGGTATTTGTAGGGCTGACCCGATGTGGAAAGAGTTGTAGATTGCGATGGTTGAATTATCTTCGTCCGGGTATTAAGCGAGGGAATTACACAGATGAAGAGAATGACTTAATCTGCAATCTCCATAAGAAACATGGCAATAGGTATCGAGATTAATTGGGTCTAGTGGGTGCTTCTAAAATGATACGATATTGTCCACTTTGAGTATAAGTAGTCTTATGGAATTTCTTTTGGTGTCTCGTACTGATGGATGAAGATAGTGTTCCTTACTTATAAACCCATAATCAACCCTTTAATTGAGTCTCGACTCATGTTTTAGAGCCTTCGAATAAAGTATATCATTTGTTAGACACTTGAGTCACTTTTGACTATACTCATCTCTCGATGATCCTCCCCTTGAACAAAGTACATCATAGAGTTTCTTCTGAAGCCCTCGAACAACCTCCCCTTAATCAAAGCTCACTCCTTTTCTAGAATACTTAGAATAAAGTACACCCTTTGTTTACACTAGAGTCACATTTTGATTAGTTGATGTGAGACTCCTCTCTCAACAATCCTCCCTAGAACAAAGTACATCATAGAGCTTCCTCCGAGGCCTACAGAGCACTCGAACAACCTCTCTTTAATCGAGGCTCTACTCCTCTATAACTCTCGAACAAAGTACACTCTTTGTTCGACACTTGAATCACTTTTGACTACACCTTTGAGACTCACAACTTCTTTGTTCGACACTCAAGGATTCTATAGTATGATATTGTCTACTTTGAGTGTAAGCTCTCATGGCTCTCATATCAATAGAGATAGTGTACCTTACTTATAAACACATGACCAACCTCTTAATTAGCTAACGTGGGACCCCTCTCCTAACACAAACTATTATATTAATATGGAAAATTAATTGTTTATATTCTTAATGTATAGATGGTCGACCATCGATGCAAAACTACCGGGAAGAACAGACAACGAAATAAAGAACCATTGGAACGCACACCTAAAGAAGCAACAATCATCCACTCAACCAAAACCAAAGCAATTAACATCCCAAGTGATTGAAGCAAAAAGAGAAGACTTTACGGGCTATTCCTCCACCACATTTGGGATTCTAGAGAGCTCATCTTTGTCCCAACAAACATCTTCATGCGATGACAATTTCGCCACCCAAAATTGGGGAGTGGAAGATCATGATCGAAGTGGGTACTACGAAGATTTCTGGACTGAACCGTGCGTGAGTGATGTTCTTGATGGGTGCTTAGAATTCTCAGCAGACTATGGAATTGGTATCTTTTCGCCACAACATGATGCGAGCTACGATGATAATTACATAGATTTGTTCTGCTCCTTACTGTAA

mRNA sequence

ATGGGTCTTGTAAGCTTCTTGGCTCAGCTCATCCCCACTCCACGCGGATTGTGTCTGCTGTCGGATCCTTGTGAATCCCCTATAGCACCACTCCAAGCTCGCTCACCCACTCTCTTGGTGTCTCTGTTGGTGAAGAAAATGGTGCGAGCTCCTGTTGTTGATAAGGATGGAGTGAGGAGAGGTGCGTGGAGCTTTGAAGAAGATGAAAAGCTTAGAGCTTATGTTCAGAGATATGGCCCTTCCAAATGGCGGGAGCTTCCCACGCTTGCAGGGCTGACCCGATGTGGAAAGAGTTGTAGATTGCGATGGTTGAATTATCTTCGTCCGGACAACGAAATAAAGAACCATTGGAACGCACACCTAAAGAAGCAACAATCATCCACTCAACCAAAACCAAAGCAATTAACATCCCAAGTGATTGAAGCAAAAAGAGAAGACTTTACGGGCTATTCCTCCACCACATTTGGGATTCTAGAGAGCTCATCTTTGTCCCAACAAACATCTTCATGCGATGACAATTTCGCCACCCAAAATTGGGGAGTGGAAGATCATGATCGAAGTGGGTACTACGAAGATTTCTGGACTGAACCGTGCGTGAGTGATGTTCTTGATGGGTGCTTAGAATTCTCAGCAGACTATGGAATTGGTATCTTTTCGCCACAACATGATGCGAGCTACGATGATAATTACATAGATTTGTTCTGCTCCTTACTGTAA

Coding sequence (CDS)

ATGGGTCTTGTAAGCTTCTTGGCTCAGCTCATCCCCACTCCACGCGGATTGTGTCTGCTGTCGGATCCTTGTGAATCCCCTATAGCACCACTCCAAGCTCGCTCACCCACTCTCTTGGTGTCTCTGTTGGTGAAGAAAATGGTGCGAGCTCCTGTTGTTGATAAGGATGGAGTGAGGAGAGGTGCGTGGAGCTTTGAAGAAGATGAAAAGCTTAGAGCTTATGTTCAGAGATATGGCCCTTCCAAATGGCGGGAGCTTCCCACGCTTGCAGGGCTGACCCGATGTGGAAAGAGTTGTAGATTGCGATGGTTGAATTATCTTCGTCCGGACAACGAAATAAAGAACCATTGGAACGCACACCTAAAGAAGCAACAATCATCCACTCAACCAAAACCAAAGCAATTAACATCCCAAGTGATTGAAGCAAAAAGAGAAGACTTTACGGGCTATTCCTCCACCACATTTGGGATTCTAGAGAGCTCATCTTTGTCCCAACAAACATCTTCATGCGATGACAATTTCGCCACCCAAAATTGGGGAGTGGAAGATCATGATCGAAGTGGGTACTACGAAGATTTCTGGACTGAACCGTGCGTGAGTGATGTTCTTGATGGGTGCTTAGAATTCTCAGCAGACTATGGAATTGGTATCTTTTCGCCACAACATGATGCGAGCTACGATGATAATTACATAGATTTGTTCTGCTCCTTACTGTAA

Protein sequence

MGLVSFLAQLIPTPRGLCLLSDPCESPIAPLQARSPTLLVSLLVKKMVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNYLRPDNEIKNHWNAHLKKQQSSTQPKPKQLTSQVIEAKREDFTGYSSTTFGILESSSLSQQTSSCDDNFATQNWGVEDHDRSGYYEDFWTEPCVSDVLDGCLEFSADYGIGIFSPQHDASYDDNYIDLFCSLL

Homology

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BLAST of CmaCh20G006540 vs. ExPASy Swiss-Prot
Match: Q9C9C8 (Transcription factor MYB122 OS=Arabidopsis thaliana OX=3702 GN=MYB122 PE=1 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.8e-21
Identity = 53/114 (46.49%), Postives = 61/114 (53.51%), Query Frame = 0


Query: 47  MVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNY 106
           MVR P    +G+++GAW+ EED+KL AYVQR+G   WR LP  AGL RCGKSCRLRW NY
Sbjct: 1   MVRTPCCRAEGLKKGAWTQEEDQKLIAYVQRHGEGGWRTLPDKAGLKRCGKSCRLRWANY 60

Query: 107 LRP-------------------------------------DNEIKNHWNAHLKK 124
           LRP                                     DNEIKNHWN H+KK
Sbjct: 61  LRPDIKRGEFSQDEEDSIINLHAIHGNKWSAIARKIPRRTDNEIKNHWNTHIKK 114

[Close]

BLAST of CmaCh20G006540 vs. ExPASy Swiss-Prot
Match: Q9SBF3 (Transcription factor MYB92 OS=Arabidopsis thaliana OX=3702 GN=MYB92 PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.2e-20
Identity = 52/115 (45.22%), Postives = 62/115 (53.91%), Query Frame = 0


Query: 47  MVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNY 106
           M R+P+ D  G+++G W+ +EDEKL  YVQ++G S WR LP LAGL RCGKSCRLRW NY
Sbjct: 1   MGRSPISDDSGLKKGPWTPDEDEKLVNYVQKHGHSSWRALPKLAGLNRCGKSCRLRWTNY 60

Query: 107 LRP-------------------------------------DNEIKNHWNAHLKKQ 125
           LRP                                     DNEIKN WN HLKK+
Sbjct: 61  LRPDIKRGRFSPDEEQTILNLHSVLGNKWSTIANQLPGRTDNEIKNFWNTHLKKK 115

[Close]

BLAST of CmaCh20G006540 vs. ExPASy Swiss-Prot
Match: Q9M0J5 (Transcription factor MYB41 OS=Arabidopsis thaliana OX=3702 GN=MYB41 PE=1 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.6e-20
Identity = 50/115 (43.48%), Postives = 62/115 (53.91%), Query Frame = 0


Query: 47  MVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNY 106
           M R+P  DK+GV++G W+ EED+KL  Y++ +GP  WR LP  AGL RCGKSCRLRW NY
Sbjct: 1   MGRSPCCDKNGVKKGPWTAEEDQKLIDYIRFHGPGNWRTLPKNAGLHRCGKSCRLRWTNY 60

Query: 107 LRP-------------------------------------DNEIKNHWNAHLKKQ 125
           LRP                                     DNEIKNHWN H++K+
Sbjct: 61  LRPDIKRGRFSFEEEETIIQLHSVMGNKWSAIAARLPGRTDNEIKNHWNTHIRKR 115

[Close]

BLAST of CmaCh20G006540 vs. ExPASy Swiss-Prot
Match: Q6K1S6 (Transcription factor MYB30 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB30 PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.5e-20
Identity = 76/247 (30.77%), Postives = 104/247 (42.11%), Query Frame = 0


Query: 47  MVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNY 106
           M RAP  +K G++RG W+ EED  L A+++R+G S WR LP  AGL RCGKSCRLRW+NY
Sbjct: 1   MGRAPCCEKMGLKRGPWTAEEDRILVAHIERHGHSNWRALPRQAGLLRCGKSCRLRWINY 60

Query: 107 LRP-------------------------------------DNEIKNHWNAHLKKQ----- 166
           LRP                                     DNEIKN W+ HLKK+     
Sbjct: 61  LRPDIKRGNFTREEEDAIIHLHDLLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLEPKP 120

Query: 167 ---QSSTQPKPKQLTSQVIEAKREDF---------TGYSSTTFGILESSSLSQQTSSCDD 226
              + +  PK K        A   D             S+TT     +   S   +S  D
Sbjct: 121 SSGREAAAPKRKATKKAAAVAVAIDVPTTVPVSPEQSLSTTTTSAATTEEYSYSMASSAD 180

Query: 227 NFATQNWGVEDHDRSGYYEDFWTEPCVS--DVLDGCLEFSADYGIGIFSPQHDASYDDNY 238
           +  T ++  E+  +    + FW+E      D  D  +E S    +G       +S DD+ 
Sbjct: 181 HNTTDSFTSEEEFQID--DSFWSETLAMTVDSTDSGMEMSGGDPLGAGGASPSSSNDDDM 240

[Close]

BLAST of CmaCh20G006540 vs. ExPASy Swiss-Prot
Match: Q9LE63 (Transcription factor MYB106 OS=Arabidopsis thaliana OX=3702 GN=MYB106 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.5e-20
Identity = 50/115 (43.48%), Postives = 61/115 (53.04%), Query Frame = 0


Query: 47  MVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNY 106
           M R+P  DK G+++G W+ EED+KL AY++ +G   WR LP  AGL RCGKSCRLRW NY
Sbjct: 1   MGRSPCCDKAGLKKGPWTPEEDQKLLAYIEEHGHGSWRSLPEKAGLQRCGKSCRLRWTNY 60

Query: 107 LRP-------------------------------------DNEIKNHWNAHLKKQ 125
           LRP                                     DNEIKN+WN HLKK+
Sbjct: 61  LRPDIKRGKFTVQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKR 115

[Close]

BLAST of CmaCh20G006540 vs. ExPASy TrEMBL
Match: A0A6J1JDW0 (transcription factor MYB8-like OS=Cucurbita maxima OX=3661 GN=LOC111484128 PE=4 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 9.0e-104
Identity = 192/229 (83.84%), Postives = 192/229 (83.84%), Query Frame = 0


Query: 47  MVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNY 106
           MVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNY
Sbjct: 1   MVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNY 60

Query: 107 LRP-------------------------------------DNEIKNHWNAHLKKQQSSTQ 166
           LRP                                     DNEIKNHWNAHLKKQQSSTQ
Sbjct: 61  LRPGIKRGNYTDEENDLICNLHKKHGNRWSTIDAKLPGRTDNEIKNHWNAHLKKQQSSTQ 120

Query: 167 PKPKQLTSQVIEAKREDFTGYSSTTFGILESSSLSQQTSSCDDNFATQNWGVEDHDRSGY 226
           PKPKQLTSQVIEAKREDFTGYSSTTFGILESSSLSQQTSSCDDNFATQNWGVEDHDRSGY
Sbjct: 121 PKPKQLTSQVIEAKREDFTGYSSTTFGILESSSLSQQTSSCDDNFATQNWGVEDHDRSGY 180

Query: 227 YEDFWTEPCVSDVLDGCLEFSADYGIGIFSPQHDASYDDNYIDLFCSLL 239
           YEDFWTEPCVSDVLDGCLEFSADYGIGIFSPQHDASYDDNYIDLFCSLL
Sbjct: 181 YEDFWTEPCVSDVLDGCLEFSADYGIGIFSPQHDASYDDNYIDLFCSLL 229

[Close]

BLAST of CmaCh20G006540 vs. ExPASy TrEMBL
Match: A0A6J1FW33 (transcription factor MYB30-like OS=Cucurbita moschata OX=3662 GN=LOC111449018 PE=4 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 1.3e-94
Identity = 185/236 (78.39%), Postives = 188/236 (79.66%), Query Frame = 0


Query: 47  MVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNY 106
           MVRAPVVDKDGVRRGAWSFEEDEKLRAYV RYGPSKWRELPTLAGLTRCGKSCRLRWLNY
Sbjct: 1   MVRAPVVDKDGVRRGAWSFEEDEKLRAYVHRYGPSKWRELPTLAGLTRCGKSCRLRWLNY 60

Query: 107 LRP-------------------------------------DNEIKNHWNAHLKKQ----- 166
           LRP                                     DNEIKNHWNAHLKKQ     
Sbjct: 61  LRPGIKRGNYTDEENDLICNLHKKHGNRWSTIAAKLPGRTDNEIKNHWNAHLKKQVKPKP 120

Query: 167 QSSTQPKPKQLTSQVIEAKREDFTGYSSTTFGILESSSLSQQTSSCDDNFATQNWGVEDH 226
           QSSTQPKPKQLTSQVIEAKREDFTGYSSTTFGILESSSLSQQTSSCDDNFATQNWGVED+
Sbjct: 121 QSSTQPKPKQLTSQVIEAKREDFTGYSSTTFGILESSSLSQQTSSCDDNFATQNWGVEDY 180

Query: 227 DRSGYYEDFW-TEPCVSDVLDGCLEFSADYGIGIFSPQ-HDASYDDNYIDLFCSLL 239
           DRSGYYEDFW TE CVSDVLDGCLEFSADY IGIFSPQ H+ +YDDNYIDLFCSLL
Sbjct: 181 DRSGYYEDFWTTEQCVSDVLDGCLEFSADYEIGIFSPQHHEPTYDDNYIDLFCSLL 236

[Close]

BLAST of CmaCh20G006540 vs. ExPASy TrEMBL
Match: A0A6J1G843 (transcription factor MYB8-like OS=Cucurbita moschata OX=3662 GN=LOC111451634 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 2.5e-61
Identity = 142/246 (57.72%), Postives = 162/246 (65.85%), Query Frame = 0


Query: 47  MVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNY 106
           MVRAP+VDKDGV+RGAWS EED+KL  YVQ++GP KWR+LP+LAGL RCGKSCRLRWLNY
Sbjct: 1   MVRAPIVDKDGVKRGAWSSEEDDKLMGYVQKHGPRKWRQLPSLAGLARCGKSCRLRWLNY 60

Query: 107 LRP-------------------------------------DNEIKNHWNAHLKKQ----- 166
           LRP                                     DNEIKNHWNAHLKKQ     
Sbjct: 61  LRPGLKKGNYTDEENDLIYKLHEMHGNRWSMVATKLSGRTDNEIKNHWNAHLKKQIERKS 120

Query: 167 QSSTQPKPKQLTSQV---IEAKREDFTGYSSTTFGILESSSLSQQT--SSCDDNFATQNW 226
           +SSTQPKPK+L   +   +EAK E+FTGY ST FGI+ESSSLS QT  SS D NF   NW
Sbjct: 121 ESSTQPKPKKLRPNIASDLEAKTEEFTGYCSTKFGIVESSSLSVQTSSSSSDANFGRLNW 180

Query: 227 GVEDHDRSGYYEDFWTEPC------VSDVLDGCLEFSADYGIGIFSPQ-HDASYDDNYID 239
            VE++DRSG Y D W EP       VS VLDG ++FSAD   G+FSPQ H+ +YDD YID
Sbjct: 181 AVEEYDRSG-YGDLWNEPFMWDGDDVSYVLDGSMQFSADN--GMFSPQVHETTYDD-YID 240

[Close]

BLAST of CmaCh20G006540 vs. ExPASy TrEMBL
Match: A0A6J1CFK4 (transcription factor MYB30-like OS=Momordica charantia OX=3673 GN=LOC111011223 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 1.4e-59
Identity = 136/246 (55.28%), Postives = 156/246 (63.41%), Query Frame = 0


Query: 47  MVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNY 106
           MVRAPVVD++G++RGAWS EED KL AYV++YGP KWR++P LAGLTRCGKSCRLRWLNY
Sbjct: 1   MVRAPVVDENGLKRGAWSLEEDHKLTAYVEKYGPWKWRQVPRLAGLTRCGKSCRLRWLNY 60

Query: 107 LRP-------------------------------------DNEIKNHWNAHLKKQ----- 166
           LRP                                     DNE+KNHWNAHLKKQ     
Sbjct: 61  LRPGIKRGNYTNEENDLICKLHEKYGNRWSTIAAKLPGRTDNEVKNHWNAHLKKQVNPKG 120

Query: 167 -QSSTQPKPKQLTSQVIE-AKRE-DFTGYSSTTFGILESSSLSQQTSSCDDNFATQNWGV 226
             +S+QPKPKQLTS  I+ AK E  F  YSS  FGILESSSLS+QT S DDNF   NW V
Sbjct: 121 AAASSQPKPKQLTSSQIKLAKTEPSFFDYSSLEFGILESSSLSRQTFSSDDNFGIMNWAV 180

Query: 227 EDHDRSGYYEDFWTEPCVSDVL---------DGCLEFSADYGIGIFSPQHDASYDDNYID 239
           ED+D S  Y DFW+EP + D           D   EFS+DY  GIFSP H+ +YDD Y+D
Sbjct: 181 EDYDHSTGYGDFWSEPFIWDDRNNVGHVPDPDASWEFSSDY--GIFSPHHETTYDD-YVD 240

[Close]

BLAST of CmaCh20G006540 vs. ExPASy TrEMBL
Match: A0A5D3C2S1 (Transcription repressor MYB6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold676G00080 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 8.2e-57
Identity = 135/245 (55.10%), Postives = 160/245 (65.31%), Query Frame = 0


Query: 47  MVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNY 106
           MVRAPVVDKDGV+RGAWS EED+KLRAY+++YGP KWRE+PTLAGL RCGKSCRLRWLNY
Sbjct: 1   MVRAPVVDKDGVKRGAWSLEEDQKLRAYIEKYGPWKWREVPTLAGLMRCGKSCRLRWLNY 60

Query: 107 LRP-------------------------------------DNEIKNHWNAHLKKQ----- 166
           LRP                                     DNE+KNHWNAHLKKQ     
Sbjct: 61  LRPGLKRGNYTNEENELICKLHQKYGNRWSTIAAKLPGRTDNEVKNHWNAHLKKQVKPKT 120

Query: 167 QSST---QPKPKQL-TSQVIEAK-REDFTGYSSTTFGILESSS-LSQQTSSCDDNFATQ- 226
           +SST   + KPK+L  S V EAK  +DF  Y S+TFGI+ESSS  SQ+TSS DDNF T+ 
Sbjct: 121 ESSTIKHEGKPKELRLSHVYEAKTSKDFAEYCSSTFGIVESSSCFSQETSSSDDNFGTEI 180

Query: 227 NWGVEDHDRS-----GYYEDFWTEPCVSDVLDGCLEFSADYGIGIFSP--QHDASYDDNY 236
           NWG+ED++       GYY++FWTEP V D  +    FS DYGI +FSP  Q++ +YD NY
Sbjct: 181 NWGMEDYNIDQLQICGYYDNFWTEPYVWD-HNQTNAFSEDYGIRMFSPQQQYETTYDHNY 240

[Close]

BLAST of CmaCh20G006540 vs. NCBI nr
Match: KAG7010706.1 (Transcription factor MYB-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 416.0 bits (1068), Expect = 2.2e-112
Identity = 213/243 (87.65%), Postives = 216/243 (88.89%), Query Frame = 0


Query: 1   MGLVSFLAQLIPTPRGLCLLSDPCE-----SPIAPLQARSPTLLVSLLVKKMVRAPVVDK 60
           MGLVSFLAQLIPTPRGLCLLSD CE     S        S TLLV LLVKKMVRAPVVDK
Sbjct: 1   MGLVSFLAQLIPTPRGLCLLSDSCEGVDLNSVPYSTTPSSLTLLVPLLVKKMVRAPVVDK 60

Query: 61  DGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNYLRPDNEIKN 120
           DGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNYLRPDNEIKN
Sbjct: 61  DGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNYLRPDNEIKN 120

Query: 121 HWNAHLKKQ-----QSSTQPKPKQLTSQVIEAKREDFTGYSSTTFGILESSSLSQQTSSC 180
           HWNAHLKKQ     QSSTQPKPKQLTSQVIEAKREDFTGYSSTTFGILESSSLSQQTSSC
Sbjct: 121 HWNAHLKKQVNPKPQSSTQPKPKQLTSQVIEAKREDFTGYSSTTFGILESSSLSQQTSSC 180

Query: 181 DDNFATQNWGVEDHDRSGYYEDFWTEPCVSDVLDGCLEFSADYGIGIFSPQ-HDASYDDN 233
           DDNFATQNWGVED+D SGYYED WTE CVSDVLDGCLEFSADY IGIFSPQ H+ +YDDN
Sbjct: 181 DDNFATQNWGVEDYDPSGYYEDIWTEQCVSDVLDGCLEFSADYEIGIFSPQHHEPTYDDN 240

[Close]

BLAST of CmaCh20G006540 vs. NCBI nr
Match: KAG6570856.1 (Transcription factor MYB30, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 412.9 bits (1060), Expect = 1.8e-111
Identity = 222/287 (77.35%), Postives = 225/287 (78.40%), Query Frame = 0


Query: 1   MGLVSFLAQLIPTPRGLCLLSDPCE-----SPIAPLQARSPTLLVSLLVKKMVRAPVVDK 60
           MGLVSFLAQLIPTPRGLCLLSDPCE     S        S TLLV LLVKKMVRAPVVDK
Sbjct: 1   MGLVSFLAQLIPTPRGLCLLSDPCEVVDLNSVPYSTTPSSLTLLVPLLVKKMVRAPVVDK 60

Query: 61  DGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNYLRP------ 120
           DGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNYLRP      
Sbjct: 61  DGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNYLRPGIKRGN 120

Query: 121 -------------------------------DNEIKNHWNAHLKKQ-----QSSTQPKPK 180
                                          DNEIKNHWNAHLKKQ     QSSTQPKPK
Sbjct: 121 YTDEENDLICNLHKKHGNRWSTIAAKLPGRTDNEIKNHWNAHLKKQVNPKPQSSTQPKPK 180

Query: 181 QLTSQVIEAKREDFTGYSSTTFGILESSSLSQQTSSCDDNFATQNWGVEDHDRSGYYEDF 239
           QLTSQVIEAKREDFTGYSSTTFGILESSSLSQQTSSCDDNFATQNWGVED+DRSGYYEDF
Sbjct: 181 QLTSQVIEAKREDFTGYSSTTFGILESSSLSQQTSSCDDNFATQNWGVEDYDRSGYYEDF 240

[Close]

BLAST of CmaCh20G006540 vs. NCBI nr
Match: XP_022986370.1 (transcription factor MYB8-like [Cucurbita maxima])

HSP 1 Score: 386.3 bits (991), Expect = 1.9e-103
Identity = 192/229 (83.84%), Postives = 192/229 (83.84%), Query Frame = 0


Query: 47  MVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNY 106
           MVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNY
Sbjct: 1   MVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNY 60

Query: 107 LRP-------------------------------------DNEIKNHWNAHLKKQQSSTQ 166
           LRP                                     DNEIKNHWNAHLKKQQSSTQ
Sbjct: 61  LRPGIKRGNYTDEENDLICNLHKKHGNRWSTIDAKLPGRTDNEIKNHWNAHLKKQQSSTQ 120

Query: 167 PKPKQLTSQVIEAKREDFTGYSSTTFGILESSSLSQQTSSCDDNFATQNWGVEDHDRSGY 226
           PKPKQLTSQVIEAKREDFTGYSSTTFGILESSSLSQQTSSCDDNFATQNWGVEDHDRSGY
Sbjct: 121 PKPKQLTSQVIEAKREDFTGYSSTTFGILESSSLSQQTSSCDDNFATQNWGVEDHDRSGY 180

Query: 227 YEDFWTEPCVSDVLDGCLEFSADYGIGIFSPQHDASYDDNYIDLFCSLL 239
           YEDFWTEPCVSDVLDGCLEFSADYGIGIFSPQHDASYDDNYIDLFCSLL
Sbjct: 181 YEDFWTEPCVSDVLDGCLEFSADYGIGIFSPQHDASYDDNYIDLFCSLL 229

[Close]

BLAST of CmaCh20G006540 vs. NCBI nr
Match: XP_023512861.1 (transcription factor MYB30-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 361.3 bits (926), Expect = 6.4e-96
Identity = 185/235 (78.72%), Postives = 189/235 (80.43%), Query Frame = 0


Query: 47  MVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNY 106
           MVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNY
Sbjct: 1   MVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNY 60

Query: 107 LRP-------------------------------------DNEIKNHWNAHLKKQ----- 166
           LRP                                     DNEIKNHWNAHLKKQ     
Sbjct: 61  LRPGIKRGNYTDEENDLICNLHKKHGNRWATIAAKLPGRTDNEIKNHWNAHLKKQVKPKP 120

Query: 167 QSSTQPKPKQLTSQVIEAKREDFTGYSSTTFGILESSSLSQQTSSCDDNFATQNWGVEDH 226
           QSSTQPKPKQLTSQVIEAKREDFTGYSSTTFGILESSSLSQQTSSCDDNFATQNWGVED+
Sbjct: 121 QSSTQPKPKQLTSQVIEAKREDFTGYSSTTFGILESSSLSQQTSSCDDNFATQNWGVEDY 180

Query: 227 DRSGYYEDFWTEPCVSDVLDGCLEFSADYGIGIFSPQ-HDASYDDNYIDLFCSLL 239
           DRSGYY+DFWTE CVSDVLDGCLEFSADY IGIFSPQ H+ +YDDNYIDLFCSLL
Sbjct: 181 DRSGYYQDFWTEQCVSDVLDGCLEFSADYEIGIFSPQHHEPTYDDNYIDLFCSLL 235

[Close]

BLAST of CmaCh20G006540 vs. NCBI nr
Match: XP_022944612.1 (transcription factor MYB30-like [Cucurbita moschata])

HSP 1 Score: 355.9 bits (912), Expect = 2.7e-94
Identity = 185/236 (78.39%), Postives = 188/236 (79.66%), Query Frame = 0


Query: 47  MVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNY 106
           MVRAPVVDKDGVRRGAWSFEEDEKLRAYV RYGPSKWRELPTLAGLTRCGKSCRLRWLNY
Sbjct: 1   MVRAPVVDKDGVRRGAWSFEEDEKLRAYVHRYGPSKWRELPTLAGLTRCGKSCRLRWLNY 60

Query: 107 LRP-------------------------------------DNEIKNHWNAHLKKQ----- 166
           LRP                                     DNEIKNHWNAHLKKQ     
Sbjct: 61  LRPGIKRGNYTDEENDLICNLHKKHGNRWSTIAAKLPGRTDNEIKNHWNAHLKKQVKPKP 120

Query: 167 QSSTQPKPKQLTSQVIEAKREDFTGYSSTTFGILESSSLSQQTSSCDDNFATQNWGVEDH 226
           QSSTQPKPKQLTSQVIEAKREDFTGYSSTTFGILESSSLSQQTSSCDDNFATQNWGVED+
Sbjct: 121 QSSTQPKPKQLTSQVIEAKREDFTGYSSTTFGILESSSLSQQTSSCDDNFATQNWGVEDY 180

Query: 227 DRSGYYEDFW-TEPCVSDVLDGCLEFSADYGIGIFSPQ-HDASYDDNYIDLFCSLL 239
           DRSGYYEDFW TE CVSDVLDGCLEFSADY IGIFSPQ H+ +YDDNYIDLFCSLL
Sbjct: 181 DRSGYYEDFWTTEQCVSDVLDGCLEFSADYEIGIFSPQHHEPTYDDNYIDLFCSLL 236

[Close]

BLAST of CmaCh20G006540 vs. TAIR 10
Match: AT1G74080.1 (myb domain protein 122 )

HSP 1 Score: 104.4 bits (259), Expect = 1.3e-22
Identity = 53/114 (46.49%), Postives = 61/114 (53.51%), Query Frame = 0


Query: 47  MVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNY 106
           MVR P    +G+++GAW+ EED+KL AYVQR+G   WR LP  AGL RCGKSCRLRW NY
Sbjct: 1   MVRTPCCRAEGLKKGAWTQEEDQKLIAYVQRHGEGGWRTLPDKAGLKRCGKSCRLRWANY 60

Query: 107 LRP-------------------------------------DNEIKNHWNAHLKK 124
           LRP                                     DNEIKNHWN H+KK
Sbjct: 61  LRPDIKRGEFSQDEEDSIINLHAIHGNKWSAIARKIPRRTDNEIKNHWNTHIKK 114

[Close]

BLAST of CmaCh20G006540 vs. TAIR 10
Match: AT5G10280.1 (myb domain protein 92 )

HSP 1 Score: 101.7 bits (252), Expect = 8.5e-22
Identity = 52/115 (45.22%), Postives = 62/115 (53.91%), Query Frame = 0


Query: 47  MVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNY 106
           M R+P+ D  G+++G W+ +EDEKL  YVQ++G S WR LP LAGL RCGKSCRLRW NY
Sbjct: 1   MGRSPISDDSGLKKGPWTPDEDEKLVNYVQKHGHSSWRALPKLAGLNRCGKSCRLRWTNY 60

Query: 107 LRP-------------------------------------DNEIKNHWNAHLKKQ 125
           LRP                                     DNEIKN WN HLKK+
Sbjct: 61  LRPDIKRGRFSPDEEQTILNLHSVLGNKWSTIANQLPGRTDNEIKNFWNTHLKKK 115

[Close]

BLAST of CmaCh20G006540 vs. TAIR 10
Match: AT4G28110.1 (myb domain protein 41 )

HSP 1 Score: 101.3 bits (251), Expect = 1.1e-21
Identity = 50/115 (43.48%), Postives = 62/115 (53.91%), Query Frame = 0


Query: 47  MVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNY 106
           M R+P  DK+GV++G W+ EED+KL  Y++ +GP  WR LP  AGL RCGKSCRLRW NY
Sbjct: 1   MGRSPCCDKNGVKKGPWTAEEDQKLIDYIRFHGPGNWRTLPKNAGLHRCGKSCRLRWTNY 60

Query: 107 LRP-------------------------------------DNEIKNHWNAHLKKQ 125
           LRP                                     DNEIKNHWN H++K+
Sbjct: 61  LRPDIKRGRFSFEEEETIIQLHSVMGNKWSAIAARLPGRTDNEIKNHWNTHIRKR 115

[Close]

BLAST of CmaCh20G006540 vs. TAIR 10
Match: AT3G01140.1 (myb domain protein 106 )

HSP 1 Score: 99.8 bits (247), Expect = 3.2e-21
Identity = 55/139 (39.57%), Postives = 71/139 (51.08%), Query Frame = 0


Query: 24  CESP-IAPLQARSPTLLVSLLVKKMVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSK 83
           C SP I    A+    ++ L+   M+ +P  DK G+++G W+ EED+KL AY++ +G   
Sbjct: 23  CVSPSIYQSDAKRAAFVIILI---MIISPCCDKAGLKKGPWTPEEDQKLLAYIEEHGHGS 82

Query: 84  WRELPTLAGLTRCGKSCRLRWLNYLRP--------------------------------- 125
           WR LP  AGL RCGKSCRLRW NYLRP                                 
Sbjct: 83  WRSLPEKAGLQRCGKSCRLRWTNYLRPDIKRGKFTVQEEQTIIQLHALLGNRWSAIATHL 142

[Close]

BLAST of CmaCh20G006540 vs. TAIR 10
Match: AT3G12820.1 (myb domain protein 10 )

HSP 1 Score: 99.4 bits (246), Expect = 4.2e-21
Identity = 61/158 (38.61%), Postives = 74/158 (46.84%), Query Frame = 0


Query: 49  RAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNYLR 108
           RAP  DK  V+RG WS EE E+LR+++ + G   WR LP LAGL RCGKSCRLRW+NYLR
Sbjct: 5   RAPCCDKSQVKRGPWSDEESERLRSFILKNGHQNWRSLPKLAGLMRCGKSCRLRWINYLR 64

Query: 109 P-------------------------------------DNEIKNHWNAHLKKQQSSTQPK 168
           P                                     DNEIKN WN HLK         
Sbjct: 65  PGLKRGNFTKEEEDTIIHLHQAYGNKWSKIASNFPGRTDNEIKNVWNTHLK--------- 124

Query: 169 PKQLTSQVIEAKREDFTGYSSTTFGILESSSLSQQTSS 170
            K+L  + I +   D T +S     +  +SS S   SS
Sbjct: 125 -KRLVKRSISSSSSDVTNHS-----VSSTSSSSSSISS 147

The following BLAST results are available for this feature:

BLAST of CmaCh20G006540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C9C8	1.8e-21	46.49	Transcription factor MYB122 OS=Arabidopsis thaliana OX=3702 GN=MYB122 PE=1 SV=1	[more]
Q9SBF3	1.2e-20	45.22	Transcription factor MYB92 OS=Arabidopsis thaliana OX=3702 GN=MYB92 PE=1 SV=1	[more]
Q9M0J5	1.6e-20	43.48	Transcription factor MYB41 OS=Arabidopsis thaliana OX=3702 GN=MYB41 PE=1 SV=1	[more]
Q6K1S6	3.5e-20	30.77	Transcription factor MYB30 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB30 PE=...	[more]
Q9LE63	4.5e-20	43.48	Transcription factor MYB106 OS=Arabidopsis thaliana OX=3702 GN=MYB106 PE=2 SV=1	[more]

BLAST of CmaCh20G006540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JDW0	9.0e-104	83.84	transcription factor MYB8-like OS=Cucurbita maxima OX=3661 GN=LOC111484128 PE=4 ...	[more]
A0A6J1FW33	1.3e-94	78.39	transcription factor MYB30-like OS=Cucurbita moschata OX=3662 GN=LOC111449018 PE...	[more]
A0A6J1G843	2.5e-61	57.72	transcription factor MYB8-like OS=Cucurbita moschata OX=3662 GN=LOC111451634 PE=...	[more]
A0A6J1CFK4	1.4e-59	55.28	transcription factor MYB30-like OS=Momordica charantia OX=3673 GN=LOC111011223 P...	[more]
A0A5D3C2S1	8.2e-57	55.10	Transcription repressor MYB6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of CmaCh20G006540 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7010706.1	2.2e-112	87.65	Transcription factor MYB-like protein, partial [Cucurbita argyrosperma subsp. ar...	[more]
KAG6570856.1	1.8e-111	77.35	Transcription factor MYB30, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022986370.1	1.9e-103	83.84	transcription factor MYB8-like [Cucurbita maxima]	[more]
XP_023512861.1	6.4e-96	78.72	transcription factor MYB30-like [Cucurbita pepo subsp. pepo]	[more]
XP_022944612.1	2.7e-94	78.39	transcription factor MYB30-like [Cucurbita moschata]	[more]

BLAST of CmaCh20G006540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G74080.1	1.3e-22	46.49	myb domain protein 122	[more]
AT5G10280.1	8.5e-22	45.22	myb domain protein 92	[more]
AT4G28110.1	1.1e-21	43.48	myb domain protein 41	[more]
AT3G01140.1	3.2e-21	39.57	myb domain protein 106	[more]
AT3G12820.1	4.2e-21	38.61	myb domain protein 10	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 59..109 e-value: 7.2E-13 score: 58.8
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 55..107 score: 11.102862
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 62..107 e-value: 1.44884E-10 score: 52.963
None	No IPR available	GENE3D	1.10.10.60		coord: 60..112 e-value: 1.7E-17 score: 65.1
None	No IPR available	PANTHER	PTHR10641	MYB FAMILY TRANSCRIPTION FACTOR	coord: 108..184 coord: 47..110
None	No IPR available	PANTHER	PTHR10641:SF976	MYB-RELATED PROTEIN MYB4-LIKE ISOFORM X1	coord: 108..184 coord: 47..110
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 60..107 e-value: 1.2E-14 score: 54.2
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 55..111 score: 21.879116
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 60..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh20G006540.1	CmaCh20G006540.1	mRNA