CmaCh20G006400 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh20G006400
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptiontranscription factor ILR3-like isoform X3
LocationCma_Chr20: 2975183 .. 2975865 (-)
RNA-Seq ExpressionCmaCh20G006400
SyntenyCmaCh20G006400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGACAGTAATGGAGAATTAGCCGGTGATTCTGCATCAGGAGACGGAGCTGGAGCTGCAGTAGGGTGCGGTGGTGATGAACCTTGAAACAATCTAATTAATTGTCTCATGTGAATATTGGACCCTACGAAAATGAACTCAATTGATCTCCTAACCCAATCAGATAAGCTAGGAGGACTAAGTTCAGAATCACGAGAAAACATACTTTTCTTTTTTAAACAATCCAACAAGCCATGTTTCATTTCAGGAGGTAGAATTGCTATAGATTTATCCATGATTTCTTTCTGGATGGAAGGAACAAATTGTTTCGTGCATGCCTTCTCGCCCTGTTATCACGCTAACATTATATCAGAATATTGTTCTATTTTGCAGATGATGAACAGCTGCTGGCATGCATTCATTCAAACGATCAAATCCTCCTCCATGAACAGAAAAGGAAGCAAAAAACAGAAACAAAAAGGTACGAATCACCCATCCCTAATCATGGTTCTAGTTTGAATTGGAAGGAAGAAGTTCAAAATTATATACAAAAGCATGAAATTACCATAGCTCCTTCCAACTCTGAGGATGTGAAATGGCAATCGGCGGCATTGGCGATAACCATTTCTAACGTCTTCCTCCTGCCCTCTGACTTCACAATTGCCAATGCACAGAGGAGAATCACTAAACCACCCACATAG

mRNA sequence

ATGGGAGACAGTAATGGAGAATTAGCCGGTGATTCTGCATCAGGAGACGGAGCTGGAGCTGCAGTAGGGTGCGGTGATGATGAACAGCTGCTGGCATGCATTCATTCAAACGATCAAATCCTCCTCCATGAACAGAAAAGGAAGCAAAAAACAGAAACAAAAAGGTACGAATCACCCATCCCTAATCATGGTTCTAGTTTGAATTGGAAGGAAGAAGTTCAAAATTATATACAAAAGCATGAAATTACCATAGCTCCTTCCAACTCTGAGGATGTGAAATGGCAATCGGCGGCATTGGCGATAACCATTTCTAACGTCTTCCTCCTGCCCTCTGACTTCACAATTGCCAATGCACAGAGGAGAATCACTAAACCACCCACATAG

Coding sequence (CDS)

ATGGGAGACAGTAATGGAGAATTAGCCGGTGATTCTGCATCAGGAGACGGAGCTGGAGCTGCAGTAGGGTGCGGTGATGATGAACAGCTGCTGGCATGCATTCATTCAAACGATCAAATCCTCCTCCATGAACAGAAAAGGAAGCAAAAAACAGAAACAAAAAGGTACGAATCACCCATCCCTAATCATGGTTCTAGTTTGAATTGGAAGGAAGAAGTTCAAAATTATATACAAAAGCATGAAATTACCATAGCTCCTTCCAACTCTGAGGATGTGAAATGGCAATCGGCGGCATTGGCGATAACCATTTCTAACGTCTTCCTCCTGCCCTCTGACTTCACAATTGCCAATGCACAGAGGAGAATCACTAAACCACCCACATAG

Protein sequence

MGDSNGELAGDSASGDGAGAAVGCGDDEQLLACIHSNDQILLHEQKRKQKTETKRYESPIPNHGSSLNWKEEVQNYIQKHEITIAPSNSEDVKWQSAALAITISNVFLLPSDFTIANAQRRITKPPT
Homology
[Close]
BLAST of CmaCh20G006400 vs. ExPASy TrEMBL
Match: A0A6J1JG93 (transcription factor ILR3-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111484113 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.2e-07
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 25 GDDEQLLACIHSNDQILLHEQKRKQKTETKRYE 58
          GDDEQLLACIHSNDQILLHEQKRKQKTETK  E
Sbjct: 39 GDDEQLLACIHSNDQILLHEQKRKQKTETKSLE 71

[Close]
BLAST of CmaCh20G006400 vs. ExPASy TrEMBL
Match: A0A6J1FUV8 (transcription factor ILR3-like OS=Cucurbita moschata OX=3662 GN=LOC111449017 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 9.6e-04
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 0 

Query: 26 DDEQLLACIHSNDQILLHEQKRKQKTETK 55
          DDEQLL CIHSNDQI+LHEQKRKQK + K
Sbjct: 13 DDEQLLTCIHSNDQIILHEQKRKQKQKQK 41

[Close]
BLAST of CmaCh20G006400 vs. NCBI nr
Match: XP_022986348.1 (transcription factor ILR3-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 64.3 bits (155), Expect = 8.6e-07
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 25 GDDEQLLACIHSNDQILLHEQKRKQKTETKRYE 58
          GDDEQLLACIHSNDQILLHEQKRKQKTETK  E
Sbjct: 39 GDDEQLLACIHSNDQILLHEQKRKQKTETKSLE 71

The following BLAST results are available for this feature:
BLAST of CmaCh20G006400 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh20G006400 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JG934.2e-0793.94transcription factor ILR3-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
A0A6J1FUV89.6e-0482.76transcription factor ILR3-like OS=Cucurbita moschata OX=3662 GN=LOC111449017 PE=... [more]
BLAST of CmaCh20G006400 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022986348.18.6e-0793.94transcription factor ILR3-like isoform X3 [Cucurbita maxima][more]
BLAST of CmaCh20G006400 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh20G006400.1CmaCh20G006400.1mRNA