CmaCh20G006180 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh20G006180
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	ThiF domain-containing protein
Location	Cma_Chr20: 2883114 .. 2883503 (-)
RNA-Seq Expression	CmaCh20G006180
Synteny	CmaCh20G006180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCGCAGAGTTCAATTATCGCACAAACAACGTGCAAATCGCACGGAGCAATTCCATAAGTTCTTGAAGCCCGGTGCCCTGGCGAAGATGCGGGACTCGCGAATCAGCGCCAGATCGTACCGATACAACTCGCTATCTCAGATCCATCTCCGCCGTACTGCTTCTCTGGAGTCTTCTCCACTTTCCGCTATCGGTCAATCGGAGATTGACGTGGATGATTTCCCTTCTTTGTCTGGAAGGGTTTACGGTCCCTTATGCCTCAAGAGGAAGAAGTTGGCGGGAATTAAGACTACGTGGTTCCCGAGCCCTAATTTGCAGACTCCAACAACCGATTTAACTGGAGACCATATTGTTGATGCGTTTAATAGCGATGTTGCTGCGCATTGA

mRNA sequence

ATGAATCGCAGAGTTCAATTATCGCACAAACAACGTGCAAATCGCACGGAGCAATTCCATAAGTTCTTGAAGCCCGGTGCCCTGGCGAAGATGCGGGACTCGCGAATCAGCGCCAGATCGTACCGATACAACTCGCTATCTCAGATCCATCTCCGCCGTACTGCTTCTCTGGAGTCTTCTCCACTTTCCGCTATCGGTCAATCGGAGATTGACGTGGATGATTTCCCTTCTTTGTCTGGAAGGGTTTACGGTCCCTTATGCCTCAAGAGGAAGAAGTTGGCGGGAATTAAGACTACGTGGTTCCCGAGCCCTAATTTGCAGACTCCAACAACCGATTTAACTGGAGACCATATTGTTGATGCGTTTAATAGCGATGTTGCTGCGCATTGA

Coding sequence (CDS)

ATGAATCGCAGAGTTCAATTATCGCACAAACAACGTGCAAATCGCACGGAGCAATTCCATAAGTTCTTGAAGCCCGGTGCCCTGGCGAAGATGCGGGACTCGCGAATCAGCGCCAGATCGTACCGATACAACTCGCTATCTCAGATCCATCTCCGCCGTACTGCTTCTCTGGAGTCTTCTCCACTTTCCGCTATCGGTCAATCGGAGATTGACGTGGATGATTTCCCTTCTTTGTCTGGAAGGGTTTACGGTCCCTTATGCCTCAAGAGGAAGAAGTTGGCGGGAATTAAGACTACGTGGTTCCCGAGCCCTAATTTGCAGACTCCAACAACCGATTTAACTGGAGACCATATTGTTGATGCGTTTAATAGCGATGTTGCTGCGCATTGA

Protein sequence

MNRRVQLSHKQRANRTEQFHKFLKPGALAKMRDSRISARSYRYNSLSQIHLRRTASLESSPLSAIGQSEIDVDDFPSLSGRVYGPLCLKRKKLAGIKTTWFPSPNLQTPTTDLTGDHIVDAFNSDVAAH

Homology

[Close]

BLAST of CmaCh20G006180 vs. ExPASy TrEMBL
Match: A0A6J1J6X7 (uncharacterized protein LOC111484017 OS=Cucurbita maxima OX=3661 GN=LOC111484017 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.0e-65
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MNRRVQLSHKQRANRTEQFHKFLKPGALAKMRDSRISARSYRYNSLSQIHLRRTASLESS 60
           MNRRVQLSHKQRANRTEQFHKFLKPGALAKMRDSRISARSYRYNSLSQIHLRRTASLESS
Sbjct: 1   MNRRVQLSHKQRANRTEQFHKFLKPGALAKMRDSRISARSYRYNSLSQIHLRRTASLESS 60

Query: 61  PLSAIGQSEIDVDDFPSLSGRVYGPLCLKRKKLAGIKTTWFPSPNLQTPTTDLTGDHIVD 120
           PLSAIGQSEIDVDDFPSLSGRVYGPLCLKRKKLAGIKTTWFPSPNLQTPTTDLTGDHIVD
Sbjct: 61  PLSAIGQSEIDVDDFPSLSGRVYGPLCLKRKKLAGIKTTWFPSPNLQTPTTDLTGDHIVD 120

Query: 121 AFNSDVAAH 130
           AFNSDVAAH
Sbjct: 121 AFNSDVAAH 129

[Close]

BLAST of CmaCh20G006180 vs. ExPASy TrEMBL
Match: A0A6J1FXV4 (uncharacterized protein LOC111448755 OS=Cucurbita moschata OX=3662 GN=LOC111448755 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 4.0e-58
Identity = 115/129 (89.15%), Postives = 123/129 (95.35%), Query Frame = 0


Query: 1   MNRRVQLSHKQRANRTEQFHKFLKPGALAKMRDSRISARSYRYNSLSQIHLRRTASLESS 60
           MNRRVQ SHKQRANRTEQFHK+LKPGALAK+RDSRISAR YRYNSLSQI+LRRTAS ESS
Sbjct: 1   MNRRVQFSHKQRANRTEQFHKYLKPGALAKIRDSRISARLYRYNSLSQIYLRRTASPESS 60

Query: 61  PLSAIGQSEIDVDDFPSLSGRVYGPLCLKRKKLAGIKTTWFPSPNLQTPTTDLTGDHIVD 120
           PLS+IGQSEIDVDDFPSLSGRVYGPLCLKRKK +GIK+TWFPSPNLQTPT DL+GD I+D
Sbjct: 61  PLSSIGQSEIDVDDFPSLSGRVYGPLCLKRKKFSGIKSTWFPSPNLQTPTADLSGDSIID 120

Query: 121 AFNSDVAAH 130
           AFNSDVAAH
Sbjct: 121 AFNSDVAAH 129

[Close]

BLAST of CmaCh20G006180 vs. ExPASy TrEMBL
Match: A0A438EFG1 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_081763 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.1e-22
Identity = 60/126 (47.62%), Postives = 82/126 (65.08%), Query Frame = 0


Query: 1   MNRRVQLSHKQRANRTEQFHKFLKPGALAKMRDSRISARSYRYNSLSQIHLRRTASLESS 60
           MNRR++  H+  + R E FH++LKPGALA++RDSRISARS+R +S SQIHL RT+S  SS
Sbjct: 1   MNRRIRALHRSSSKRDEAFHRYLKPGALAQLRDSRISARSHRVDSHSQIHLHRTSSPPSS 60

Query: 61  PLSAIGQSEIDVDDFPSLSGRVYGPLCLKRKKLAGIKTTWFPSPNLQTPTTDLTGDHIVD 120
           PL         +D FP  +GR YGP CL+RKKL   K+ +  S +  +P +D     +VD
Sbjct: 61  PLPP------QIDAFPCFAGRNYGPRCLQRKKLVAAKSVFLKSSSPASPMSDSPDSVVVD 120

Query: 121 AFNSDV 127
            F  ++
Sbjct: 121 LFGPEI 120

[Close]

BLAST of CmaCh20G006180 vs. ExPASy TrEMBL
Match: A0A2P5EE91 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_203870 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.7e-22
Identity = 67/130 (51.54%), Postives = 85/130 (65.38%), Query Frame = 0


Query: 1   MNRRVQLSHKQRANRTEQFHKFLKPGALAKMRDSRISARSYRYNSLSQIHLRRTASLESS 60
           MNRR +  H+   +RTE F K+LKPGALA++RDSRISARS+R  SL+QI   R++   S 
Sbjct: 1   MNRRTRAIHRSSPSRTEPFLKYLKPGALAQIRDSRISARSHRVVSLAQI---RSSQPSSP 60

Query: 61  PLSAIGQ-SEIDVDDFPSLSGRVYGPLCLKRKKLAGIKTTWFPSPNLQTPTTDLTGDHIV 120
           P S  GQ S   +D FP  SGRV+GP C +RKKL   K   FPS N  +P  D   D I+
Sbjct: 61  PPSTPGQLSVAAMDGFPCFSGRVFGPRCPQRKKLVASKAVLFPSQNPSSPVLD-AADPIM 120

Query: 121 DAFNSDVAAH 130
           D F++D+AAH
Sbjct: 121 DVFSTDIAAH 126

[Close]

BLAST of CmaCh20G006180 vs. ExPASy TrEMBL
Match: A5C5X4 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_041943 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 6.1e-22
Identity = 59/126 (46.83%), Postives = 82/126 (65.08%), Query Frame = 0


Query: 1   MNRRVQLSHKQRANRTEQFHKFLKPGALAKMRDSRISARSYRYNSLSQIHLRRTASLESS 60
           MNRR++  H+  + R E FH++LKPGALA++RDSRISARS+R +S SQIHL RT+S  SS
Sbjct: 1   MNRRIRXLHRSSSKRDEAFHRYLKPGALAQLRDSRISARSHRVDSHSQIHLHRTSSPPSS 60

Query: 61  PLSAIGQSEIDVDDFPSLSGRVYGPLCLKRKKLAGIKTTWFPSPNLQTPTTDLTGDHIVD 120
           PL         +D FP  +GR YGP CL+RKKL   K+ +  S +  +P ++     +VD
Sbjct: 61  PLPP------QIDAFPCFAGRNYGPRCLQRKKLVAAKSVFLKSSSPASPMSESPDSVVVD 120

Query: 121 AFNSDV 127
            F  ++
Sbjct: 121 LFGPEI 120

[Close]

BLAST of CmaCh20G006180 vs. NCBI nr
Match: XP_022986202.1 (uncharacterized protein LOC111484017 [Cucurbita maxima])

HSP 1 Score: 258.1 bits (658), Expect = 4.1e-65
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MNRRVQLSHKQRANRTEQFHKFLKPGALAKMRDSRISARSYRYNSLSQIHLRRTASLESS 60
           MNRRVQLSHKQRANRTEQFHKFLKPGALAKMRDSRISARSYRYNSLSQIHLRRTASLESS
Sbjct: 1   MNRRVQLSHKQRANRTEQFHKFLKPGALAKMRDSRISARSYRYNSLSQIHLRRTASLESS 60

Query: 61  PLSAIGQSEIDVDDFPSLSGRVYGPLCLKRKKLAGIKTTWFPSPNLQTPTTDLTGDHIVD 120
           PLSAIGQSEIDVDDFPSLSGRVYGPLCLKRKKLAGIKTTWFPSPNLQTPTTDLTGDHIVD
Sbjct: 61  PLSAIGQSEIDVDDFPSLSGRVYGPLCLKRKKLAGIKTTWFPSPNLQTPTTDLTGDHIVD 120

Query: 121 AFNSDVAAH 130
           AFNSDVAAH
Sbjct: 121 AFNSDVAAH 129

[Close]

BLAST of CmaCh20G006180 vs. NCBI nr
Match: XP_023513131.1 (uncharacterized protein LOC111777660 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 243.0 bits (619), Expect = 1.4e-60
Identity = 120/129 (93.02%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 1   MNRRVQLSHKQRANRTEQFHKFLKPGALAKMRDSRISARSYRYNSLSQIHLRRTASLESS 60
           MNRRVQ SHKQRANRTEQFHK+LKPGALAKMRDSRISARSYRYNSLSQI+LRRTASLESS
Sbjct: 1   MNRRVQFSHKQRANRTEQFHKYLKPGALAKMRDSRISARSYRYNSLSQIYLRRTASLESS 60

Query: 61  PLSAIGQSEIDVDDFPSLSGRVYGPLCLKRKKLAGIKTTWFPSPNLQTPTTDLTGDHIVD 120
           PLSAIGQSEIDVDDFPSL+GRVYGPLCLKRKK AGIK+TWFPSPNLQTPTTDLTG+ I+D
Sbjct: 61  PLSAIGQSEIDVDDFPSLAGRVYGPLCLKRKKFAGIKSTWFPSPNLQTPTTDLTGEPIID 120

Query: 121 AFNSDVAAH 130
           AFNSDVAAH
Sbjct: 121 AFNSDVAAH 129

[Close]

BLAST of CmaCh20G006180 vs. NCBI nr
Match: XP_022944248.1 (uncharacterized protein LOC111448755 [Cucurbita moschata] >KAG6570884.1 hypothetical protein SDJN03_29799, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010732.1 hypothetical protein SDJN02_27528, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 233.8 bits (595), Expect = 8.3e-58
Identity = 115/129 (89.15%), Postives = 123/129 (95.35%), Query Frame = 0


Query: 1   MNRRVQLSHKQRANRTEQFHKFLKPGALAKMRDSRISARSYRYNSLSQIHLRRTASLESS 60
           MNRRVQ SHKQRANRTEQFHK+LKPGALAK+RDSRISAR YRYNSLSQI+LRRTAS ESS
Sbjct: 1   MNRRVQFSHKQRANRTEQFHKYLKPGALAKIRDSRISARLYRYNSLSQIYLRRTASPESS 60

Query: 61  PLSAIGQSEIDVDDFPSLSGRVYGPLCLKRKKLAGIKTTWFPSPNLQTPTTDLTGDHIVD 120
           PLS+IGQSEIDVDDFPSLSGRVYGPLCLKRKK +GIK+TWFPSPNLQTPT DL+GD I+D
Sbjct: 61  PLSSIGQSEIDVDDFPSLSGRVYGPLCLKRKKFSGIKSTWFPSPNLQTPTADLSGDSIID 120

Query: 121 AFNSDVAAH 130
           AFNSDVAAH
Sbjct: 121 AFNSDVAAH 129

[Close]

BLAST of CmaCh20G006180 vs. NCBI nr
Match: XP_038902395.1 (uncharacterized protein LOC120089036 [Benincasa hispida])

HSP 1 Score: 196.8 bits (499), Expect = 1.1e-46
Identity = 99/130 (76.15%), Postives = 113/130 (86.92%), Query Frame = 0


Query: 1   MNRRVQLSHKQRANRTEQFHKFLKPGALAKMRDSRISARSYRYNSLSQIHLRRTASLESS 60
           M R+++ S K  A+RTEQFHK+LKPGALA+MRDS+ISA+ YR+NSLSQI+LRRT+ L SS
Sbjct: 1   MKRKLKFSPKPYADRTEQFHKYLKPGALAQMRDSQISAKWYRFNSLSQIYLRRTSPLPSS 60

Query: 61  PLSAIGQSEID-VDDFPSLSGRVYGPLCLKRKKLAGIKTTWFPSPNLQTPTTDLTGDHIV 120
           PLS IGQSEID VDDFPSL+GR YGP CLKRKKLA IK TWFPSPNLQTPTTD+T D +V
Sbjct: 61  PLSTIGQSEIDVVDDFPSLAGRGYGPFCLKRKKLAAIKATWFPSPNLQTPTTDITRDPVV 120

Query: 121 DAFNSDVAAH 130
           D FNSDVAAH
Sbjct: 121 DVFNSDVAAH 130

[Close]

BLAST of CmaCh20G006180 vs. NCBI nr
Match: XP_034702288.1 (uncharacterized protein LOC117927029 [Vitis riparia])

HSP 1 Score: 115.5 bits (288), Expect = 3.3e-22
Identity = 60/126 (47.62%), Postives = 82/126 (65.08%), Query Frame = 0


Query: 1   MNRRVQLSHKQRANRTEQFHKFLKPGALAKMRDSRISARSYRYNSLSQIHLRRTASLESS 60
           MNRR++  H+  + R E FH++LKPGALA++RDSRISARS+R +S SQIHL RT+S  SS
Sbjct: 1   MNRRIRTLHRSSSKRDEAFHRYLKPGALAQLRDSRISARSHRVDSHSQIHLHRTSSPPSS 60

Query: 61  PLSAIGQSEIDVDDFPSLSGRVYGPLCLKRKKLAGIKTTWFPSPNLQTPTTDLTGDHIVD 120
           PL         +D FP  +GR YGP CL+RKKL   K+ +  S +  +P +D     +VD
Sbjct: 61  PLPT------QIDAFPCFTGRNYGPRCLQRKKLVAAKSVFLKSSSPASPMSDSPDSVVVD 120

Query: 121 AFNSDV 127
            F  ++
Sbjct: 121 LFGPEI 120

[Close]

BLAST of CmaCh20G006180 vs. TAIR 10
Match: AT5G54970.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26960.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 63.2 bits (152), Expect = 1.8e-10
Identity = 45/125 (36.00%), Postives = 70/125 (56.00%), Query Frame = 0


Query: 10  KQRANRTEQFHKFLKPGALAKMRDSRISARS----YRYNSLSQIHLRRTASLESSPLSAI 69
           K  A R++ FH++LKPGALA++R+SRI+ARS       +SLSQ+    + S  S   +A 
Sbjct: 6   KSPARRSDGFHRYLKPGALAQIRNSRINARSTTSLVSRSSLSQLVDPISPSENSVDEAAA 65

Query: 70  GQSEIDVDDFPSLSGRVYGPLCLKRKKLAGIKT-TWFPSPNLQTPTTDLTGDHIVDAFNS 129
               + +D  P L  ++YGP   +RKKLA  ++ +     N+  P   +    +V+  +S
Sbjct: 66  ASRNLTIDQVPHLLRKIYGPYSYQRKKLAAARSVSSMMMMNINPPINSV----LVEP-SS 125

[Close]

BLAST of CmaCh20G006180 vs. TAIR 10
Match: AT4G26960.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54970.1); Has 22 Blast hits to 22 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 55.8 bits (133), Expect = 2.9e-08
Identity = 36/102 (35.29%), Postives = 57/102 (55.88%), Query Frame = 0


Query: 15  RTEQFHKFLKPGALAKMRDSRISARSYRYNSLSQIHLRRT--------ASLESSPLSAIG 74
           R + FH+++KPGALA++R++RI+      N+ S   L R+        +S   SP++A  
Sbjct: 40  RNDGFHRYMKPGALAQIRNARIN------NARSNFPLTRSLSDPVDPPSSSSESPIAATP 99

Query: 75  QSEIDVDDFPSLSGRVYGPLCLKRKKLAGIKTTWF---PSPN 106
           Q+ I +D  P L  ++YGP  + RKKL   ++      PSPN
Sbjct: 100 QT-ITMDQMPHLLSKIYGPYRIGRKKLGPARSAMVKLNPSPN 134

The following BLAST results are available for this feature:

BLAST of CmaCh20G006180 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh20G006180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J6X7	2.0e-65	100.00	uncharacterized protein LOC111484017 OS=Cucurbita maxima OX=3661 GN=LOC111484017...	[more]
A0A6J1FXV4	4.0e-58	89.15	uncharacterized protein LOC111448755 OS=Cucurbita moschata OX=3662 GN=LOC1114487...	[more]
A0A438EFG1	2.1e-22	47.62	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_081763 PE=4 SV=1	[more]
A0A2P5EE91	2.7e-22	51.54	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_203870 PE=4 SV...	[more]
A5C5X4	6.1e-22	46.83	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_041943 PE=4 SV=1	[more]

BLAST of CmaCh20G006180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022986202.1	4.1e-65	100.00	uncharacterized protein LOC111484017 [Cucurbita maxima]	[more]
XP_023513131.1	1.4e-60	93.02	uncharacterized protein LOC111777660 [Cucurbita pepo subsp. pepo]	[more]
XP_022944248.1	8.3e-58	89.15	uncharacterized protein LOC111448755 [Cucurbita moschata] >KAG6570884.1 hypothet...	[more]
XP_038902395.1	1.1e-46	76.15	uncharacterized protein LOC120089036 [Benincasa hispida]	[more]
XP_034702288.1	3.3e-22	47.62	uncharacterized protein LOC117927029 [Vitis riparia]	[more]

BLAST of CmaCh20G006180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54970.1	1.8e-10	36.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G26960.1	2.9e-08	35.29	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35495:SF10	SUBFAMILY NOT NAMED	coord: 1..129
None	No IPR available	PANTHER	PTHR35495	OS06G0679600 PROTEIN	coord: 1..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh20G006180.1	CmaCh20G006180.1	mRNA