CmaCh20G006020 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh20G006020
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	cellulose synthase-like protein H1
Location	Cma_Chr20: 2825473 .. 2825895 (-)
RNA-Seq Expression	CmaCh20G006020
Synteny	CmaCh20G006020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCTCGTACTTATTTGGAGTTATAGGCATAGTATTTAAGCTTTTAGGCTTATCAGAAACAACGTTTGAGGTAACGAAGAAGGGATTGTCTTCTTCAAACAATGAAGATGAAGTAAAGGAAGATTTGGGTCGATTCACTTTCGATGAGTCGTCGTTGTTCGTGCCAGCCACGACAATTATGATGATACAACTGATAGCGCTTTCAATCGGTTTGTCGGAATCAATGGAGGGAGGAAGCCATGTTATTACCGAATTACCTATAGGGGAGATGATATGCAGTGTGTGGTTAGTTTTGTGCTTTTGACCATTCTTGAAGGGAATGTTTGCAAAGGGAAGATTTGGAATTCCATGGCCAACCTTGTGCAAGTCTAGTGCTTTAACACTCGTGTTTGTGTTCTTCGCGTTAATGAAGAACGAGTGA

mRNA sequence

ATGTGCTCGTACTTATTTGGAGTTATAGGCATAGTATTTAAGCTTTTAGGCTTATCAGAAACAACGTTTGAGGTAACGAAGAAGGGATTGTCTTCTTCAAACAATGAAGATGAAGTAAAGGAAGATTTGGGTCGATTCACTTTCGATGAGTCGTCGTTGTTCGTGCCAGCCACGACAATTATGATGATACAACTGATAGCGCTTTCAATCGGTTTGTCGGAATCAATGGAGGGAGGAAGCCATGTTATTACCGAATTACCTATAGGGGAGATGATATGCAGTGGAATGTTTGCAAAGGGAAGATTTGGAATTCCATGGCCAACCTTGTGCAAGTCTAGTGCTTTAACACTCGTGTTTGTGTTCTTCGCGTTAATGAAGAACGAGTGA

Coding sequence (CDS)

ATGTGCTCGTACTTATTTGGAGTTATAGGCATAGTATTTAAGCTTTTAGGCTTATCAGAAACAACGTTTGAGGTAACGAAGAAGGGATTGTCTTCTTCAAACAATGAAGATGAAGTAAAGGAAGATTTGGGTCGATTCACTTTCGATGAGTCGTCGTTGTTCGTGCCAGCCACGACAATTATGATGATACAACTGATAGCGCTTTCAATCGGTTTGTCGGAATCAATGGAGGGAGGAAGCCATGTTATTACCGAATTACCTATAGGGGAGATGATATGCAGTGGAATGTTTGCAAAGGGAAGATTTGGAATTCCATGGCCAACCTTGTGCAAGTCTAGTGCTTTAACACTCGTGTTTGTGTTCTTCGCGTTAATGAAGAACGAGTGA

Protein sequence

MCSYLFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVKEDLGRFTFDESSLFVPATTIMMIQLIALSIGLSESMEGGSHVITELPIGEMICSGMFAKGRFGIPWPTLCKSSALTLVFVFFALMKNE

Homology

[Close]

BLAST of CmaCh20G006020 vs. ExPASy Swiss-Prot
Match: Q8RX83 (Cellulose synthase-like protein B3 OS=Arabidopsis thaliana OX=3702 GN=CSLB3 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.6e-17
Identity = 59/146 (40.41%), Postives = 81/146 (55.48%), Query Frame = 0


Query: 2   CSYLFGVIGIVFKLLGLSETTFEVTKK-------GLSSSNNEDEV---KEDLGRFTFDES 61
           CS+LF +  I+ KLLG+S+T F VTKK       G  S  ++ EV    +D G+F FD S
Sbjct: 612 CSWLFSIPDIILKLLGISKTVFIVTKKTMPKTMSGSGSEKSQREVDCPNQDSGKFEFDGS 671

Query: 62  SLFVPATTIMMIQLIAL---SIGLSESMEGGSH----------VITELPIGEMICSGMFA 121
             F+P T I+++ L AL   S+GL     GGS           VI  LP       GMF 
Sbjct: 672 LYFLPGTFILLVNLAALAGCSVGLQRHRGGGSGLAEACGCILVVILFLP----FLKGMFE 731

Query: 122 KGRFGIPWPTLCKSSALTLVFVFFAL 125
           KG++GIPW TL K++ L ++FV F++
Sbjct: 732 KGKYGIPWSTLSKAAFLAVLFVVFSV 753

[Close]

BLAST of CmaCh20G006020 vs. ExPASy Swiss-Prot
Match: Q339N5 (Cellulose synthase-like protein H1 OS=Oryza sativa subsp. japonica OX=39947 GN=CSLH1 PE=2 SV=2)

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-15
Identity = 45/134 (33.58%), Postives = 75/134 (55.97%), Query Frame = 0


Query: 3   SYLFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVKE-DLGRFTFDESSLFVPATTIM 62
           ++L   + ++ K LG SET FEVT+K  S+S+ +    E + GRFTFDES++F+P T + 
Sbjct: 613 AWLLAFLTVILKTLGFSETVFEVTRKDKSTSDGDSNTDEPEPGRFTFDESTVFIPVTALA 672

Query: 63  MIQLIALSIG-------LSESMEGGSHVITELPIGEMI------CSGMFAKGRFGIPWPT 122
           M+ +IA+++G        +E + GG  +   +  G ++        G+   GR+GIPW  
Sbjct: 673 MLSVIAIAVGAWRVVLVTTEGLPGGPGISEFISCGWLVLCFMPLLRGLVGSGRYGIPWSI 732

[Close]

BLAST of CmaCh20G006020 vs. ExPASy Swiss-Prot
Match: O80891 (Cellulose synthase-like protein B4 OS=Arabidopsis thaliana OX=3702 GN=CSLB4 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 9.0e-15
Identity = 56/146 (38.36%), Postives = 80/146 (54.79%), Query Frame = 0


Query: 2   CSYLFGVIGIVFKLLGLSETTFEVTKK-------GLSSSNNEDEV---KEDLGRFTFDES 61
           CS+LF V+ ++ KLLG+S+T F VTKK       G  S  ++ EV    +D G+F FD S
Sbjct: 612 CSWLFSVLDVILKLLGISKTVFIVTKKTMPETKSGSGSKKSQREVDCPNQDSGKFEFDGS 671

Query: 62  SLFVPATTIMMIQLIALS---IGLSESMEGGSH----------VITELPIGEMICSGMFA 121
             F+P T I+++ L AL+   +GL     GGS           VI  LP       GMF 
Sbjct: 672 LYFLPGTFIVLVNLAALAGCLVGLQSRGGGGSGLAEACGCILVVILFLP----FLKGMFE 731

Query: 122 KGRFGIPWPTLCKSSALTLVFVFFAL 125
           KG++GIP+ TL K++ L  +FV  ++
Sbjct: 732 KGKYGIPFSTLSKAAFLAALFVVLSV 753

[Close]

BLAST of CmaCh20G006020 vs. ExPASy Swiss-Prot
Match: Q7PC71 (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. indica OX=39946 GN=CSLH2 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.6e-14
Identity = 47/135 (34.81%), Postives = 72/135 (53.33%), Query Frame = 0


Query: 3   SYLFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVK-EDLGRFTFDESSLFVPATTIM 62
           ++    + ++ K LGLSET FEVT K  S S+++D     D GRFTFD   +F+P T + 
Sbjct: 624 AWTLAFLTVLLKSLGLSETVFEVTGKDKSMSDDDDNTDGADPGRFTFDSLPVFIPVTALA 683

Query: 63  MIQLIALSIGLSESMEGGSHVITELP-IGEMICSG-------------MFAKGRFGIPWP 122
           M+ ++A+++G      G +  +   P IGE +C G             ++ KG +GIPW 
Sbjct: 684 MLNIVAVTVGACRVAFGTAEGVPCAPGIGEFMCCGWLVLCFFPFVRGIVWGKGSYGIPWS 743

[Close]

BLAST of CmaCh20G006020 vs. ExPASy Swiss-Prot
Match: Q7XUT9 (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. japonica OX=39947 GN=CSLH2 PE=3 SV=3)

HSP 1 Score: 79.7 bits (195), Expect = 2.6e-14
Identity = 47/135 (34.81%), Postives = 72/135 (53.33%), Query Frame = 0


Query: 3   SYLFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVK-EDLGRFTFDESSLFVPATTIM 62
           ++    + ++ K LGLSET FEVT K  S S+++D     D GRFTFD   +F+P T + 
Sbjct: 624 AWTLAFLTVLLKSLGLSETVFEVTGKDKSMSDDDDNTDGADPGRFTFDSLPVFIPVTALA 683

Query: 63  MIQLIALSIGLSESMEGGSHVITELP-IGEMICSG-------------MFAKGRFGIPWP 122
           M+ ++A+++G      G +  +   P IGE +C G             ++ KG +GIPW 
Sbjct: 684 MLNIVAVTVGACRVAFGTAEGVPCAPGIGEFMCCGWLVLCFFPFVRGIVWGKGSYGIPWS 743

[Close]

BLAST of CmaCh20G006020 vs. ExPASy TrEMBL
Match: A0A6J1FVZ4 (cellulose synthase-like protein H1 OS=Cucurbita moschata OX=3662 GN=LOC111448620 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.0e-53
Identity = 115/140 (82.14%), Postives = 121/140 (86.43%), Query Frame = 0


Query: 1   MCSYLFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVKEDLGRFTFDESSLFVPATTI 60
           MCSYLFGVIGIVFKLLGLSETTFEVTKKGLS+SN+EDEVKEDLGRFTFDES LFVPATTI
Sbjct: 606 MCSYLFGVIGIVFKLLGLSETTFEVTKKGLSTSNDEDEVKEDLGRFTFDESPLFVPATTI 665

Query: 61  MMIQLIALSIGLSESMEGGSHVITELPIGEMICS------------GMFAKGRFGIPWPT 120
           MMIQL+ALSIGLS SME  S+VITELP+GEMICS            GMFAKGRFGIPWPT
Sbjct: 666 MMIQLMALSIGLSRSMEARSYVITELPMGEMICSVWLVLCFWPFLKGMFAKGRFGIPWPT 725

Query: 121 LCKSSALTLVFVFFALMKNE 129
           LCKSSA TL+FV FAL KNE
Sbjct: 726 LCKSSAFTLLFVLFALTKNE 745

[Close]

BLAST of CmaCh20G006020 vs. ExPASy TrEMBL
Match: A0A6J1CI91 (cellulose synthase-like protein H1 OS=Momordica charantia OX=3673 GN=LOC111011183 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 6.7e-29
Identity = 72/136 (52.94%), Postives = 90/136 (66.18%), Query Frame = 0


Query: 1   MCSYLFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVKEDLGRFTFDESSLFVPATTI 60
           MCS L G++ ++ K+LGLSET FEVTKK  SS+N       DLGR TFDES  FVP TTI
Sbjct: 607 MCSSLLGMVAVIMKILGLSETVFEVTKKESSSTNGAQGTDGDLGRLTFDESPFFVPGTTI 666

Query: 61  MMIQLIALSIGLSESMEGGSHVITELPIGEMICS------------GMFAKGRFGIPWPT 120
           +MIQL ALSIGL     G   ++ E  +GE+ICS            G+F+KGR+G+PWPT
Sbjct: 667 LMIQLAALSIGLL----GRQSIVQEFGVGEVICSVWLILSFWPFLKGLFSKGRYGLPWPT 726

Query: 121 LCKSSALTLVFVFFAL 125
           LCKSSAL  +FV + +
Sbjct: 727 LCKSSALAFLFVVYCV 738

[Close]

BLAST of CmaCh20G006020 vs. ExPASy TrEMBL
Match: A0A6J1I5D5 (cellulose synthase-like protein H1 OS=Cucurbita maxima OX=3661 GN=LOC111469760 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 4.8e-27
Identity = 74/141 (52.48%), Postives = 92/141 (65.25%), Query Frame = 0


Query: 1   MCSYLFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVKE-DLGRFTFDESSLFVPATT 60
           MCS L GV+ ++ K+LGLSETTFEVTKK  +SS+++ E  + DLGRFTFDES +FVP TT
Sbjct: 605 MCSCLLGVVAVLLKILGLSETTFEVTKKESASSSDDTESSDRDLGRFTFDESPMFVPITT 664

Query: 61  IMMIQLIALSIGLSESMEGGSHVITELPIGEMICS------------GMFAKGRFGIPWP 120
           IMMIQL ALSIG   +  G      E  +GE+ CS            GMFAKG +G+PW 
Sbjct: 665 IMMIQLAALSIGFLGTQPGRQ----EFGVGEVTCSVWLVLCFWPILKGMFAKGSYGLPWS 724

Query: 121 TLCKSSALTLVFVFFALMKNE 129
           TL KSSAL  +FV+   M  +
Sbjct: 725 TLFKSSALAFLFVYLCRMSTK 741

[Close]

BLAST of CmaCh20G006020 vs. ExPASy TrEMBL
Match: A0A0A0LN39 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G416190 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 4.8e-27
Identity = 72/140 (51.43%), Postives = 92/140 (65.71%), Query Frame = 0


Query: 1   MCSYLFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVKE--DLGRFTFDESSLFVPAT 60
           +C+ L G + +  KLLGLSET FEVTKK  SSS+++ E     DLGRFTFDES LFVP T
Sbjct: 606 ICASLLGAVAVALKLLGLSETVFEVTKKESSSSSDDTESSSDGDLGRFTFDESPLFVPGT 665

Query: 61  TIMMIQLIALSIGLSESMEGGSHVITELPIGEMICS------------GMFAKGRFGIPW 120
           TI++IQL+ALSI  S   +     + E  +GE+ CS            GMFAKG++G+PW
Sbjct: 666 TILIIQLLALSIAFSRIRQPN---VVEFGVGEVTCSVWLILCFWSFLKGMFAKGKYGLPW 725

Query: 121 PTLCKSSALTLVFVFFALMK 127
            TLCKSSAL  +FV F +M+
Sbjct: 726 STLCKSSALAFLFVCFCIMQ 742

[Close]

BLAST of CmaCh20G006020 vs. ExPASy TrEMBL
Match: A0A6J1G5N8 (cellulose synthase-like protein H1 OS=Cucurbita moschata OX=3662 GN=LOC111451122 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 6.2e-27
Identity = 74/141 (52.48%), Postives = 92/141 (65.25%), Query Frame = 0


Query: 1   MCSYLFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVKE-DLGRFTFDESSLFVPATT 60
           MCS L GV+ ++ K+LGLSETTFEVTKK  +SS+++ E  + DLGRFTFDES +FVP TT
Sbjct: 603 MCSCLLGVVAVLLKILGLSETTFEVTKKESASSSDDTESSDRDLGRFTFDESPMFVPITT 662

Query: 61  IMMIQLIALSIGLSESMEGGSHVITELPIGEMICS------------GMFAKGRFGIPWP 120
           IMMIQL ALSIG   +  G      E  +GE+ CS            GMFAKG +G+PW 
Sbjct: 663 IMMIQLAALSIGFLGTQPGR----REFGVGEVTCSVWLVLCFWPILKGMFAKGSYGLPWS 722

Query: 121 TLCKSSALTLVFVFFALMKNE 129
           TL KSSAL  +FV+   M  +
Sbjct: 723 TLFKSSALAFLFVYLCRMSTK 739

[Close]

BLAST of CmaCh20G006020 vs. NCBI nr
Match: XP_023512253.1 (cellulose synthase-like protein H1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 222.6 bits (566), Expect = 1.9e-54
Identity = 116/140 (82.86%), Postives = 122/140 (87.14%), Query Frame = 0


Query: 1   MCSYLFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVKEDLGRFTFDESSLFVPATTI 60
           MCSYLFGVIGIVFKLLGLSETTFEVTKKG S+SN+EDEVKEDLGRFTF+ES LF+PATTI
Sbjct: 602 MCSYLFGVIGIVFKLLGLSETTFEVTKKGSSTSNDEDEVKEDLGRFTFNESPLFIPATTI 661

Query: 61  MMIQLIALSIGLSESMEGGSHVITELPIGEMICS------------GMFAKGRFGIPWPT 120
           MMIQLIALSIGLS SM+ GSHVITELPIGEMICS            GMFAKGRFGIPWPT
Sbjct: 662 MMIQLIALSIGLSRSMKAGSHVITELPIGEMICSAWLILCFWPFLKGMFAKGRFGIPWPT 721

Query: 121 LCKSSALTLVFVFFALMKNE 129
           LCKSSALTL+FVFFAL  NE
Sbjct: 722 LCKSSALTLLFVFFALTNNE 741

[Close]

BLAST of CmaCh20G006020 vs. NCBI nr
Match: KAG6570895.1 (Cellulose synthase-like protein H1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 221.5 bits (563), Expect = 4.2e-54
Identity = 115/140 (82.14%), Postives = 121/140 (86.43%), Query Frame = 0


Query: 1   MCSYLFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVKEDLGRFTFDESSLFVPATTI 60
           MCSYLFGVIGIVFKLLGLSETTFEVTKKGLS+SN+EDEV+EDLGRFTFDES LFV ATTI
Sbjct: 606 MCSYLFGVIGIVFKLLGLSETTFEVTKKGLSTSNDEDEVREDLGRFTFDESPLFVSATTI 665

Query: 61  MMIQLIALSIGLSESMEGGSHVITELPIGEMICS------------GMFAKGRFGIPWPT 120
           MMIQL+AL IGLS SME GSHVITELP+GEMICS            GMFAKGRFGIPWPT
Sbjct: 666 MMIQLMALPIGLSRSMEAGSHVITELPVGEMICSVWLILCFWPFLKGMFAKGRFGIPWPT 725

Query: 121 LCKSSALTLVFVFFALMKNE 129
           LCKSSA TL+FVFFAL KNE
Sbjct: 726 LCKSSAFTLLFVFFALTKNE 745

[Close]

BLAST of CmaCh20G006020 vs. NCBI nr
Match: XP_022944069.1 (cellulose synthase-like protein H1 [Cucurbita moschata])

HSP 1 Score: 219.2 bits (557), Expect = 2.1e-53
Identity = 115/140 (82.14%), Postives = 121/140 (86.43%), Query Frame = 0


Query: 1   MCSYLFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVKEDLGRFTFDESSLFVPATTI 60
           MCSYLFGVIGIVFKLLGLSETTFEVTKKGLS+SN+EDEVKEDLGRFTFDES LFVPATTI
Sbjct: 606 MCSYLFGVIGIVFKLLGLSETTFEVTKKGLSTSNDEDEVKEDLGRFTFDESPLFVPATTI 665

Query: 61  MMIQLIALSIGLSESMEGGSHVITELPIGEMICS------------GMFAKGRFGIPWPT 120
           MMIQL+ALSIGLS SME  S+VITELP+GEMICS            GMFAKGRFGIPWPT
Sbjct: 666 MMIQLMALSIGLSRSMEARSYVITELPMGEMICSVWLVLCFWPFLKGMFAKGRFGIPWPT 725

Query: 121 LCKSSALTLVFVFFALMKNE 129
           LCKSSA TL+FV FAL KNE
Sbjct: 726 LCKSSAFTLLFVLFALTKNE 745

[Close]

BLAST of CmaCh20G006020 vs. NCBI nr
Match: XP_038902592.1 (cellulose synthase-like protein H1 isoform X2 [Benincasa hispida])

HSP 1 Score: 160.6 bits (405), Expect = 8.9e-36
Identity = 88/139 (63.31%), Postives = 106/139 (76.26%), Query Frame = 0


Query: 1   MCSYLFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVKEDLGRFTFDESSLFVPATTI 60
           M +YLFG IGI+ KLLGLSE  FEVTKKG SSSN++ E++ED  RFTFD+SSLFVPATTI
Sbjct: 637 MSAYLFGFIGILLKLLGLSENMFEVTKKGSSSSNDDGEMEEDSSRFTFDDSSLFVPATTI 696

Query: 61  MMIQLIALSIGLSESMEGGSHVITELPIGEMICS------------GMFAKGRFGIPWPT 120
           ++IQL+ALSIGL   +E  +HVI E+ +GEMICS            GM AKGRFGIPWPT
Sbjct: 697 LIIQLVALSIGLLRLVE-ANHVIEEVMVGEMICSVWLILCFWPFLKGMLAKGRFGIPWPT 756

Query: 121 LCKSSALTLVFVFFALMKN 128
           LCKS +LTL+FV   ++KN
Sbjct: 757 LCKSISLTLLFV-SVMLKN 773

[Close]

BLAST of CmaCh20G006020 vs. NCBI nr
Match: XP_038902591.1 (cellulose synthase-like protein H1 isoform X1 [Benincasa hispida])

HSP 1 Score: 160.6 bits (405), Expect = 8.9e-36
Identity = 88/139 (63.31%), Postives = 106/139 (76.26%), Query Frame = 0


Query: 1   MCSYLFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVKEDLGRFTFDESSLFVPATTI 60
           M +YLFG IGI+ KLLGLSE  FEVTKKG SSSN++ E++ED  RFTFD+SSLFVPATTI
Sbjct: 642 MSAYLFGFIGILLKLLGLSENMFEVTKKGSSSSNDDGEMEEDSSRFTFDDSSLFVPATTI 701

Query: 61  MMIQLIALSIGLSESMEGGSHVITELPIGEMICS------------GMFAKGRFGIPWPT 120
           ++IQL+ALSIGL   +E  +HVI E+ +GEMICS            GM AKGRFGIPWPT
Sbjct: 702 LIIQLVALSIGLLRLVE-ANHVIEEVMVGEMICSVWLILCFWPFLKGMLAKGRFGIPWPT 761

Query: 121 LCKSSALTLVFVFFALMKN 128
           LCKS +LTL+FV   ++KN
Sbjct: 762 LCKSISLTLLFV-SVMLKN 778

[Close]

BLAST of CmaCh20G006020 vs. TAIR 10
Match: AT2G32530.1 (cellulose synthase-like B3 )

HSP 1 Score: 88.6 bits (218), Expect = 4.0e-18
Identity = 59/146 (40.41%), Postives = 81/146 (55.48%), Query Frame = 0


Query: 2   CSYLFGVIGIVFKLLGLSETTFEVTKK-------GLSSSNNEDEV---KEDLGRFTFDES 61
           CS+LF +  I+ KLLG+S+T F VTKK       G  S  ++ EV    +D G+F FD S
Sbjct: 612 CSWLFSIPDIILKLLGISKTVFIVTKKTMPKTMSGSGSEKSQREVDCPNQDSGKFEFDGS 671

Query: 62  SLFVPATTIMMIQLIAL---SIGLSESMEGGSH----------VITELPIGEMICSGMFA 121
             F+P T I+++ L AL   S+GL     GGS           VI  LP       GMF 
Sbjct: 672 LYFLPGTFILLVNLAALAGCSVGLQRHRGGGSGLAEACGCILVVILFLP----FLKGMFE 731

Query: 122 KGRFGIPWPTLCKSSALTLVFVFFAL 125
           KG++GIPW TL K++ L ++FV F++
Sbjct: 732 KGKYGIPWSTLSKAAFLAVLFVVFSV 753

[Close]

BLAST of CmaCh20G006020 vs. TAIR 10
Match: AT2G32540.1 (cellulose synthase-like B4 )

HSP 1 Score: 81.3 bits (199), Expect = 6.4e-16
Identity = 56/146 (38.36%), Postives = 80/146 (54.79%), Query Frame = 0


Query: 2   CSYLFGVIGIVFKLLGLSETTFEVTKK-------GLSSSNNEDEV---KEDLGRFTFDES 61
           CS+LF V+ ++ KLLG+S+T F VTKK       G  S  ++ EV    +D G+F FD S
Sbjct: 612 CSWLFSVLDVILKLLGISKTVFIVTKKTMPETKSGSGSKKSQREVDCPNQDSGKFEFDGS 671

Query: 62  SLFVPATTIMMIQLIALS---IGLSESMEGGSH----------VITELPIGEMICSGMFA 121
             F+P T I+++ L AL+   +GL     GGS           VI  LP       GMF 
Sbjct: 672 LYFLPGTFIVLVNLAALAGCLVGLQSRGGGGSGLAEACGCILVVILFLP----FLKGMFE 731

Query: 122 KGRFGIPWPTLCKSSALTLVFVFFAL 125
           KG++GIP+ TL K++ L  +FV  ++
Sbjct: 732 KGKYGIPFSTLSKAAFLAALFVVLSV 753

[Close]

BLAST of CmaCh20G006020 vs. TAIR 10
Match: AT4G15290.1 (Cellulose synthase family protein )

HSP 1 Score: 73.2 bits (178), Expect = 1.7e-13
Identity = 53/147 (36.05%), Postives = 78/147 (53.06%), Query Frame = 0


Query: 3   SYLFGVIGIVFKLLGLSETTFEVTKKGL---------SSSNNEDEV-KEDLGRFTFDESS 62
           S+LF +  I+ KLLG+S+  F + KK +           S  ED+V K +LG+F FD S 
Sbjct: 611 SWLFSIQDIILKLLGISQIGFVIAKKTIPETKSVYESKPSQGEDDVPKLNLGKFEFDSSG 670

Query: 63  LFVPATTIMMIQLIALSIGL------SESMEGGSHVITE-------LPIGEMICSGMFAK 122
           LF+P T IM++ L AL+  L      S S  GG   + E       + +      G+F  
Sbjct: 671 LFIPGTFIMLVNLAALAGYLVRLQRSSCSHGGGGSGLAEACGCILVVMLFLPFLKGLFEH 730

Query: 123 GRFGIPWPTLCKSSALTLVFVFFALMK 127
           G++ IP  TL K++ LT++FVFF + K
Sbjct: 731 GKYSIPLSTLSKAAFLTVLFVFFCVGK 757

[Close]

BLAST of CmaCh20G006020 vs. TAIR 10
Match: AT2G32610.1 (cellulose synthase-like B1 )

HSP 1 Score: 68.6 bits (166), Expect = 4.3e-12
Identity = 52/145 (35.86%), Postives = 74/145 (51.03%), Query Frame = 0


Query: 3   SYLFGVIGIVFKLLGLSETTFEVTKK---------GLSSSNNED-EVKEDLGRFTFDESS 62
           S+LF +  I  KLLG+SET F +TKK         G   S  ED     DL +F FD S 
Sbjct: 613 SWLFSIFDITLKLLGISETVFIITKKTVAGTKSALGSGPSQGEDVGPNSDLFKFEFDGSL 672

Query: 63  LFVPATTIMMIQLIAL---SIGL---SESMEGGSHVITE-------LPIGEMICSGMFAK 122
            F+P T I+++ + AL   S+GL   S S EGG   + E       + +      G+F K
Sbjct: 673 CFLPGTFIVLVNIAALAVFSVGLQRSSYSHEGGGSGLAEACGCVLVMMLFLPFLMGLFKK 732

Query: 123 GRFGIPWPTLCKSSALTLVFVFFAL 125
           G++G P  TL  +  L ++FV F++
Sbjct: 733 GKYGTPLSTLSIAGFLAVLFVVFSV 757

[Close]

BLAST of CmaCh20G006020 vs. TAIR 10
Match: AT2G32620.1 (cellulose synthase-like B )

HSP 1 Score: 65.9 bits (159), Expect = 2.8e-11
Identity = 51/145 (35.17%), Postives = 75/145 (51.72%), Query Frame = 0


Query: 3   SYLFGVIGIVFKLLGLSETTFEVTKK----------GLSSSNNEDEVKEDLGRFTFDESS 62
           S+LF +  I+ KLLGLS+  F V+KK          G+  S  ED+   + G+  FD S 
Sbjct: 612 SWLFSIFDIILKLLGLSKNVFLVSKKTMPVETMSGSGIGPSQREDD-GPNSGKTEFDGSL 671

Query: 63  LFVPATTIMMIQLIAL---SIGLSESM----EGGSHV------ITELPIGEMICSGMFAK 122
            F+P T I+++ L AL    +GL  S      GGS +      I  + +      G+FAK
Sbjct: 672 YFLPGTFIVLVNLAALVGVFVGLQRSSYSHGGGGSGLGEACACILVVMLFFPFLKGLFAK 731

Query: 123 GRFGIPWPTLCKSSALTLVFVFFAL 125
           G++GIP  TL K+  L + FV F++
Sbjct: 732 GKYGIPLSTLSKAGFLAVSFVVFSV 755

The following BLAST results are available for this feature:

BLAST of CmaCh20G006020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RX83	5.6e-17	40.41	Cellulose synthase-like protein B3 OS=Arabidopsis thaliana OX=3702 GN=CSLB3 PE=2...	[more]
Q339N5	1.4e-15	33.58	Cellulose synthase-like protein H1 OS=Oryza sativa subsp. japonica OX=39947 GN=C...	[more]
O80891	9.0e-15	38.36	Cellulose synthase-like protein B4 OS=Arabidopsis thaliana OX=3702 GN=CSLB4 PE=3...	[more]
Q7PC71	2.6e-14	34.81	Cellulose synthase-like protein H2 OS=Oryza sativa subsp. indica OX=39946 GN=CSL...	[more]
Q7XUT9	2.6e-14	34.81	Cellulose synthase-like protein H2 OS=Oryza sativa subsp. japonica OX=39947 GN=C...	[more]

BLAST of CmaCh20G006020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FVZ4	1.0e-53	82.14	cellulose synthase-like protein H1 OS=Cucurbita moschata OX=3662 GN=LOC111448620...	[more]
A0A6J1CI91	6.7e-29	52.94	cellulose synthase-like protein H1 OS=Momordica charantia OX=3673 GN=LOC11101118...	[more]
A0A6J1I5D5	4.8e-27	52.48	cellulose synthase-like protein H1 OS=Cucurbita maxima OX=3661 GN=LOC111469760 P...	[more]
A0A0A0LN39	4.8e-27	51.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G416190 PE=4 SV=1	[more]
A0A6J1G5N8	6.2e-27	52.48	cellulose synthase-like protein H1 OS=Cucurbita moschata OX=3662 GN=LOC111451122...	[more]

BLAST of CmaCh20G006020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023512253.1	1.9e-54	82.86	cellulose synthase-like protein H1 [Cucurbita pepo subsp. pepo]	[more]
KAG6570895.1	4.2e-54	82.14	Cellulose synthase-like protein H1, partial [Cucurbita argyrosperma subsp. soror...	[more]
XP_022944069.1	2.1e-53	82.14	cellulose synthase-like protein H1 [Cucurbita moschata]	[more]
XP_038902592.1	8.9e-36	63.31	cellulose synthase-like protein H1 isoform X2 [Benincasa hispida]	[more]
XP_038902591.1	8.9e-36	63.31	cellulose synthase-like protein H1 isoform X1 [Benincasa hispida]	[more]

BLAST of CmaCh20G006020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32530.1	4.0e-18	40.41	cellulose synthase-like B3	[more]
AT2G32540.1	6.4e-16	38.36	cellulose synthase-like B4	[more]
AT4G15290.1	1.7e-13	36.05	Cellulose synthase family protein	[more]
AT2G32610.1	4.3e-12	35.86	cellulose synthase-like B1	[more]
AT2G32620.1	2.8e-11	35.17	cellulose synthase-like B	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005150	Cellulose synthase	PFAM	PF03552	Cellulose_synt	coord: 3..85 e-value: 1.9E-6 score: 26.7
None	No IPR available	PANTHER	PTHR13301:SF53	CELLULOSE SYNTHASE-LIKE PROTEIN B1-RELATED	coord: 1..123
None	No IPR available	PANTHER	PTHR13301	X-BOX TRANSCRIPTION FACTOR-RELATED	coord: 1..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh20G006020.1	CmaCh20G006020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030244	cellulose biosynthetic process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0016760	cellulose synthase (UDP-forming) activity