CmaCh20G005740 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh20G005740
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr20: 2753553 .. 2753786 (+)
RNA-Seq ExpressionCmaCh20G005740
SyntenyCmaCh20G005740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTTTGGTGGGGAAAACAATAAACAACAAGCTGCAGAAGACACCAACGGCGACAGGCAACACAACCAAGAGCTCCCTTGTTTCATCGGACGGTGTTGGATACAAACAGTTGACAACATTTTGATCGAACAGAGCAACAGCTATGAACACCAAGAGAGAAGCGATGGCATGAAAGAAATCGATGAAGCGAAGCCTGTATTGAGCAGCCTCTTCTTTGGGAAGGGTGATTGA

mRNA sequence

ATGTCGTTTGGTGGGGAAAACAATAAACAACAAGCTGCAGAAGACACCAACGGCGACAGGCAACACAACCAAGAGCTCCCTTGTTTCATCGGACGGTGTTGGATACAAACAGTTGACAACATTTTGATCGAACAGAGCAACAGCTATGAACACCAAGAGAGAAGCGATGGCATGAAAGAAATCGATGAAGCGAAGCCTGTATTGAGCAGCCTCTTCTTTGGGAAGGGTGATTGA

Coding sequence (CDS)

ATGTCGTTTGGTGGGGAAAACAATAAACAACAAGCTGCAGAAGACACCAACGGCGACAGGCAACACAACCAAGAGCTCCCTTGTTTCATCGGACGGTGTTGGATACAAACAGTTGACAACATTTTGATCGAACAGAGCAACAGCTATGAACACCAAGAGAGAAGCGATGGCATGAAAGAAATCGATGAAGCGAAGCCTGTATTGAGCAGCCTCTTCTTTGGGAAGGGTGATTGA

Protein sequence

MSFGGENNKQQAAEDTNGDRQHNQELPCFIGRCWIQTVDNILIEQSNSYEHQERSDGMKEIDEAKPVLSSLFFGKGD
Homology
BLAST of CmaCh20G005740 vs. ExPASy TrEMBL
Match: A0A2P5CHX1 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_284420 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.1e-05
Identity = 29/71 (40.85%), Postives = 42/71 (59.15%), Query Frame = 0

Query: 1  MSFGGENNKQQAAEDTNGDRQHNQELPCFIGRCWIQTVDNILIEQSNSYEHQERSDGMKE 60
          ++ GG+N+KQ    DTN +RQ  + L   I R WI+   +ILI+QSN  +H+     M E
Sbjct: 29 VALGGKNDKQHTTNDTNPNRQRRKNLLSLIRRRWIKATHHILIKQSNGRKHEYGHQSMHE 88

Query: 61 IDEAKPVLSSL 72
          ID+   +L SL
Sbjct: 89 IDKLHTILRSL 99

BLAST of CmaCh20G005740 vs. ExPASy TrEMBL
Match: A0A0A0KK92 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518140 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.9e-04
Identity = 28/69 (40.58%), Postives = 44/69 (63.77%), Query Frame = 0

Query: 1  MSFGGENNKQQAAEDTNGDRQHNQELPCFIGRCWIQTVDNILIEQSNSYEHQERSDGMKE 60
          M+ G ++NKQ   +  N +RQ  Q L   I    ++TV +ILI+QSNS E+Q R + M+E
Sbjct: 1  MASGRKSNKQHTTKHPNCNRQRRQNLLRLIRWRRVKTVHHILIKQSNSRENQNRHESMQE 60

Query: 61 IDEAKPVLS 70
          I++ +P+ S
Sbjct: 61 INKPQPITS 69

BLAST of CmaCh20G005740 vs. NCBI nr
Match: PON60637.1 (hypothetical protein TorRG33x02_284420 [Trema orientale])

HSP 1 Score: 58.9 bits (141), Expect = 2.2e-05
Identity = 29/71 (40.85%), Postives = 42/71 (59.15%), Query Frame = 0

Query: 1  MSFGGENNKQQAAEDTNGDRQHNQELPCFIGRCWIQTVDNILIEQSNSYEHQERSDGMKE 60
          ++ GG+N+KQ    DTN +RQ  + L   I R WI+   +ILI+QSN  +H+     M E
Sbjct: 29 VALGGKNDKQHTTNDTNPNRQRRKNLLSLIRRRWIKATHHILIKQSNGRKHEYGHQSMHE 88

Query: 61 IDEAKPVLSSL 72
          ID+   +L SL
Sbjct: 89 IDKLHTILRSL 99

BLAST of CmaCh20G005740 vs. NCBI nr
Match: CAG1854294.1 (unnamed protein product [Musa acuminata subsp. malaccensis])

HSP 1 Score: 53.9 bits (128), Expect = 7.1e-04
Identity = 25/67 (37.31%), Postives = 44/67 (65.67%), Query Frame = 0

Query: 1   MSFGGENNKQQAAEDTNGDRQHNQELPCFIGRCWIQTVDNILIEQSNSYEHQERSDGMKE 60
           M+ GGE+++Q AAE++N DRQ  ++L   +G   +   D++L+EQ +  EH +R +GM+E
Sbjct: 65  MADGGESDEQSAAENSNPDRQRCEDLKLDVGGHRVVARDHVLVEQRHRREHHQRREGMEE 124

Query: 61  IDEAKPV 68
           +   + V
Sbjct: 125 VQRPQSV 131

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2P5CHX11.1e-0540.85Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_284420 PE=4 SV... [more]
A0A0A0KK929.9e-0440.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518140 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
PON60637.12.2e-0540.85hypothetical protein TorRG33x02_284420 [Trema orientale][more]
CAG1854294.17.1e-0437.31unnamed protein product [Musa acuminata subsp. malaccensis][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh20G005740.1CmaCh20G005740.1mRNA