CmaCh20G005300 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh20G005300
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionCyclin-dependent kinases regulatory subunit
LocationCma_Chr20: 2546143 .. 2548871 (-)
RNA-Seq ExpressionCmaCh20G005300
SyntenyCmaCh20G005300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGAAGAGCCTGCATTATCATGTGAAGGTAAACTATTGAACAATAATTTTTTAAATCATAATTGATGGCATTTTAATTTATTGTTAAGAAGATAAGATAATGGTTCATTTTTTTGGGTTCAATCGATCCCTTTAGTATTTTTAAATTAGGTATATTTCTTCCAAATTTTGTTGAAATCATGGAATTTGAACATTTCCCTCACCAATGTCGAAAAATATCGATTGTGATTTAGTTTTTTCACGCCCATGTATCAAATGGCTAAACTAGAGTTTCTAAATTAGAGTTTCAATTTTAAACCCATGCTTTTGGCTCTTTTTCCTCGAAATTTGAGTTGAAATACTTGAATATTGACATTTCCCACAACAATGTGGAACTATATCGACCGTGACTCGATTTTTTATCGCTCGTGCTATGATTGACTGATTTTGTGTTTCCAAATTAGAATTTCGATTTTAAAATTTACGTGAAATTTAGGTCAAAATCATAGAATGTGAATTAAAAAATATTTTTACTATGGTAATATGAATCGAAGATAAGATATACATCACAAATATATTATTTTTAAAAAAATTAGGATACATACACATAGGAAGACCCACCCATTGATAACAAATGTCTGACACGTATTGGATATCTTATAAATTAAATTTTCAATTTTTTTTTTTTTTCATTTGAGTGAGTCTAGAGTTTTAAAATAAAATAAAATAAAATAATTATGAAATAAGTCTTAAATTATTAACTATTTTTCGTAGTGAAAAGAAAAATTAACATTTTTTATTTCGAGAATGAAGTAATTGGGGGATTTCATTTCCACGCCTTCAAGGCTGAATCCGCAGATCAACGAATTCCTCATCAGGTCCCTCGTCTGCTCTTTGAAGAAGCTCCTCTTCAGCTCAATCGTCATCACTCTCGATTCCAAATCCATCGGTACGGTCAGCTTCTTCTCTTTTTCAGCTAGGGTTTTGTTCTTTACTGTACTGTTTTGCTCAAGAATCTTGCCGACGCCGATGGAGAGTCATTTCCTTTCTTTTCGTAATCCAAATTCGTTTTAGAATGCATTTCTGCAGATTTGTTCAACTATCTTATATTTCTCATGTTTCGCGCTTCCTAAGATGGTGTTTTTCTTTCAATTAGTTTCTATGAACATTTTTTTTACTGATTCTAATGGTTTTTTGGTTCCATGCCTAGACTTTGCACCTTCTTAGTTTATGAATTTCATTATCAATTGTGGACGGAGTGGGAAAATATCAGTAATTTGCGTTTGCATTTCGTGCTAATTAAGGGAATAAAGTGCTGCGTGGTTCTTCAACATTTGTTCTTTTGTGTCTGTATCTGTGTATGTGTACATGGAGATGGAGGCTGAAGTTTCTCAGTTTTGAGAGATTAGCTTCCAAAGTGTTATGATTTGCTCGTACTTGTGGATTTTTGTCACTTTCATAATTACAGAAGTTTTCATTTCACATTTCGTGTTATGTAGATAACTATGGAATCTGATGATTGTGATATTGTCCTTGTTTTGTTGTTCAATATAGCTGTTTTCATAAGGTTCTCAAAGTCAGTCAGAATATCTGATATATTTGTTTCCATCAAACATATTGTCGGCGAAAAATTTGGAAGATGTTCTTATCAATTGAGCATTGTTCACTGTATAGAGTTGGTATAGCATATCTAACATTTTGTTGAGCCTTGATTTGATTTCTGTTGAGCATTTCCTTCCATTCGTCAATTCAAGGTGGTTGGTGCTTTCTTGTAAGACAACTTTGTAGCTTAAGTTTACAGAATATCAATTGCTGTCGGCCTCACAGTTCTGGCTCTAAAATGTTCCTCTTCTTTTCCTTGCTGTTTTGGTTCTTGTGTTTTGTTCTCTCCCTTTCCTTTTGGCTGATGATGTGCACATGAAGCCTTCTTGTTGCACTTTTTAGAACCAAAAGATCCGTCATTTGACTAAAACTAAAAAAAGGAAGCAATCTGTCATATTTGCCAACTAGTTTCTGCCCTGCTTACATCCAAACTGTAGACACATATTCCTATTAGAATTACTTGAAATTTTACCATATTGGATTTCTTTTTGGTATAATGTTCACTCATTTTATAGGTGTTTGTATTCAGATCACTTGTAGAAAATCCGATGACACGACAGAATATTATCGTTGCCACTGGGTTGATAGCCTTTGCATCTGCTGGATTAGCCTTTCCCTTTTACATGGCGTAAGTAAATGAACTCATGGCTGGTACTGACAATTTTATGCATTTGAACGAATGAATGAGTGAATCTGCACGAGTTAATGTGAAAAGGATTGATCATTCAGGTCTTCCAAAAAGCCAGTTATAGATCCGGCAAAGCCACTTCCACCGCAGGCCACTTTTCGAGGTCCTTATATAAACACTGGTTCCCGGGATGTCGGACCCGACCATCAAACTTACACCAAGAAGTGATTTATCTTCAATGTTCCTAATGTGCCCTGTAAGTTGAATGTGTTGGTTCATTTTAAAGTAGAAGAAGACCACGTTAATTCTTTTTTTCTTTTTTTTTTCCCCCCCTCTTATGGAGAAACCAGCAGTTCACTTGACATAGAAATGGAGGATTAAAATATTGAGGTCCATATCGATAATAGAATTTCAATTTTACAAATTTGTAAATATAAATATCATTATCGACGAATATTTCTGTATATTACATTATAAATTTTGTTATTTTTTTTACTGATTCAGCTTTACAGGTCCAA

mRNA sequence

ATGAGGAAGAGCCTGCATTATCATGTGAAGGCTGAATCCGCAGATCAACGAATTCCTCATCAGGTCCCTCGTCTGCTCTTTGAAGAAGCTCCTCTTCAGCTCAATCGTCATCACTCTCGATTCCAAATCCATCGATCACTTGTAGAAAATCCGATGACACGACAGAATATTATCGTTGCCACTGGGTTGATAGCCTTTGCATCTGCTGGATTAGCCTTTCCCTTTTACATGGCGTCTTCCAAAAAGCCAGTTATAGATCCGGCAAAGCCACTTCCACCGCAGGCCACTTTTCGAGGTCCTTATATAAACACTGGTTCCCGGGATGTCGGACCCGACCATCAAACTTACACCAAGAAGTGATTTATCTTCAATGTTCCTAATGTGCCCTGTAAGTTGAATGTGTTGGTTCATTTTAAAGTAGAAGAAGACCACGTTAATTCTTTTTTTCTTTTTTTTTTCCCCCCCTCTTATGGAGAAACCAGCAGTTCACTTGACATAGAAATGGAGGATTAAAATATTGAGGTCCATATCGATAATAGAATTTCAATTTTACAAATTTGTAAATATAAATATCATTATCGACGAATATTTCTGTATATTACATTATAAATTTTGTTATTTTTTTTACTGATTCAGCTTTACAGGTCCAA

Coding sequence (CDS)

ATGAGGAAGAGCCTGCATTATCATGTGAAGGCTGAATCCGCAGATCAACGAATTCCTCATCAGGTCCCTCGTCTGCTCTTTGAAGAAGCTCCTCTTCAGCTCAATCGTCATCACTCTCGATTCCAAATCCATCGATCACTTGTAGAAAATCCGATGACACGACAGAATATTATCGTTGCCACTGGGTTGATAGCCTTTGCATCTGCTGGATTAGCCTTTCCCTTTTACATGGCGTCTTCCAAAAAGCCAGTTATAGATCCGGCAAAGCCACTTCCACCGCAGGCCACTTTTCGAGGTCCTTATATAAACACTGGTTCCCGGGATGTCGGACCCGACCATCAAACTTACACCAAGAAGTGA

Protein sequence

MRKSLHYHVKAESADQRIPHQVPRLLFEEAPLQLNRHHSRFQIHRSLVENPMTRQNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDHQTYTKK
Homology
[Close]
BLAST of CmaCh20G005300 vs. ExPASy TrEMBL
Match: A0A6J1JB19 (uncharacterized protein LOC111484157 OS=Cucurbita maxima OX=3661 GN=LOC111484157 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 4.3e-30
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 52  MTRQNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGP 111
           MTRQNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGP
Sbjct: 1   MTRQNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGP 60

Query: 112 DHQTYTKK 120
           DHQTYTKK
Sbjct: 61  DHQTYTKK 68

[Close]
BLAST of CmaCh20G005300 vs. ExPASy TrEMBL
Match: A0A6J1FTX8 (uncharacterized protein LOC111448766 OS=Cucurbita moschata OX=3662 GN=LOC111448766 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.2e-29
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 52  MTRQNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGP 111
           MTR+NIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGP
Sbjct: 1   MTRRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGP 60

Query: 112 DHQTYTKK 120
           DHQTYTKK
Sbjct: 61  DHQTYTKK 68

[Close]
BLAST of CmaCh20G005300 vs. ExPASy TrEMBL
Match: A0A6J1CHR8 (uncharacterized protein LOC111011024 OS=Momordica charantia OX=3673 GN=LOC111011024 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.5e-27
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 0 

Query: 54  RQNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDH 113
           R+NIIVATGLIAFASAGLAFPFYMASSKKPVIDP KPLPPQATFRGPYINTGSRDVGPDH
Sbjct: 4   RRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPGKPLPPQATFRGPYINTGSRDVGPDH 63

Query: 114 QTYTKK 120
           QTY+KK
Sbjct: 64  QTYSKK 69

[Close]
BLAST of CmaCh20G005300 vs. ExPASy TrEMBL
Match: A0A1S3CQB9 (uncharacterized protein LOC103503042 OS=Cucumis melo OX=3656 GN=LOC103503042 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.4e-27
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 0 

Query: 54  RQNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDH 113
           R+N+IVA GLIAFASAGLAFPFYMASSKKPVIDP KPLPPQATFRGPYINTGSRDVGPDH
Sbjct: 4   RRNLIVAVGLIAFASAGLAFPFYMASSKKPVIDPTKPLPPQATFRGPYINTGSRDVGPDH 63

Query: 114 QTYTKK 120
           QTYTKK
Sbjct: 64  QTYTKK 69

[Close]
BLAST of CmaCh20G005300 vs. ExPASy TrEMBL
Match: A0A1J3ES06 (Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=LC_TR9866_c0_g1_i1_g.34783 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.3e-26
Identity = 63/79 (79.75%), Postives = 70/79 (88.61%), Query Frame = 0 

Query: 41  FQIHRSLVENPMTRQNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGP 100
           FQ+ ++LV    +R N+IVATGL+ FASAGLAFPFYMASSKKPVIDP KPLPPQATFRGP
Sbjct: 31  FQLQKTLVAMAPSR-NMIVATGLVVFASAGLAFPFYMASSKKPVIDPTKPLPPQATFRGP 90

Query: 101 YINTGSRDVGPDHQTYTKK 120
           YINTGSRDVGPDH+TY KK
Sbjct: 91  YINTGSRDVGPDHRTYPKK 108

[Close]
BLAST of CmaCh20G005300 vs. NCBI nr
Match: KAG7010668.1 (hypothetical protein SDJN02_27463, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 152.5 bits (384), Expect = 2.3e-33
Identity = 75/87 (86.21%), Postives = 79/87 (90.80%), Query Frame = 0 

Query: 33  QLNRHHSRFQIHRSLVENPMTRQNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLP 92
           Q  R  ++  + RSL ENPMTR+NIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLP
Sbjct: 9   QFKRLAAKVFVFRSLAENPMTRRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLP 68

Query: 93  PQATFRGPYINTGSRDVGPDHQTYTKK 120
           PQATFRGPYINTGSRDVGPDHQTYTKK
Sbjct: 69  PQATFRGPYINTGSRDVGPDHQTYTKK 95

[Close]
BLAST of CmaCh20G005300 vs. NCBI nr
Match: KAG6570826.1 (hypothetical protein SDJN03_29741, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 151.8 bits (382), Expect = 3.8e-33
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 0 

Query: 43  IHRSLVENPMTRQNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYI 102
           + RSL ENPMTR+NIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYI
Sbjct: 125 VFRSLAENPMTRRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYI 184

Query: 103 NTGSRDVGPDHQTYTKK 120
           NTGSRDVGPDHQTYTKK
Sbjct: 185 NTGSRDVGPDHQTYTKK 201

[Close]
BLAST of CmaCh20G005300 vs. NCBI nr
Match: XP_022986414.1 (uncharacterized protein LOC111484157 [Cucurbita maxima] >XP_022986415.1 uncharacterized protein LOC111484157 [Cucurbita maxima] >XP_022986416.1 uncharacterized protein LOC111484157 [Cucurbita maxima])

HSP 1 Score: 140.6 bits (353), Expect = 8.9e-30
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 52  MTRQNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGP 111
           MTRQNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGP
Sbjct: 1   MTRQNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGP 60

Query: 112 DHQTYTKK 120
           DHQTYTKK
Sbjct: 61  DHQTYTKK 68

[Close]
BLAST of CmaCh20G005300 vs. NCBI nr
Match: XP_022944261.1 (uncharacterized protein LOC111448766 [Cucurbita moschata] >XP_022944262.1 uncharacterized protein LOC111448766 [Cucurbita moschata] >XP_022944263.1 uncharacterized protein LOC111448766 [Cucurbita moschata] >XP_022944264.1 uncharacterized protein LOC111448766 [Cucurbita moschata] >XP_022944266.1 uncharacterized protein LOC111448766 [Cucurbita moschata])

HSP 1 Score: 139.0 bits (349), Expect = 2.6e-29
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 52  MTRQNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGP 111
           MTR+NIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGP
Sbjct: 1   MTRRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGP 60

Query: 112 DHQTYTKK 120
           DHQTYTKK
Sbjct: 61  DHQTYTKK 68

[Close]
BLAST of CmaCh20G005300 vs. NCBI nr
Match: XP_023513377.1 (uncharacterized protein LOC111777879 [Cucurbita pepo subsp. pepo] >XP_023513378.1 uncharacterized protein LOC111777879 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 137.9 bits (346), Expect = 5.7e-29
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 52  MTRQNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGP 111
           MTR+NIIVATGLIAFASAGLAFPFYMASSKKPVIDPA+PLPPQATFRGPYINTGSRDVGP
Sbjct: 1   MTRRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPARPLPPQATFRGPYINTGSRDVGP 60

Query: 112 DHQTYTKK 120
           DHQTYTKK
Sbjct: 61  DHQTYTKK 68

[Close]
BLAST of CmaCh20G005300 vs. TAIR 10
Match: AT5G22875.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 123.6 bits (309), Expect = 1.0e-28
Identity = 57/65 (87.69%), Postives = 62/65 (95.38%), Query Frame = 0 

Query: 55  QNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDHQ 114
           +NI+VATGL+ FASAGLAFPFYMASSK+PVIDP KPLPPQATFRGPYINTGSRDVGPDH+
Sbjct: 5   RNIVVATGLVLFASAGLAFPFYMASSKQPVIDPTKPLPPQATFRGPYINTGSRDVGPDHR 64

Query: 115 TYTKK 120
           TY KK
Sbjct: 65  TYPKK 69

[Close]
BLAST of CmaCh20G005300 vs. TAIR 10
Match: AT5G22875.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 32 Blast hits to 32 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 123.6 bits (309), Expect = 1.0e-28
Identity = 57/65 (87.69%), Postives = 62/65 (95.38%), Query Frame = 0 

Query: 55  QNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDHQ 114
           +NI+VATGL+ FASAGLAFPFYMASSK+PVIDP KPLPPQATFRGPYINTGSRDVGPDH+
Sbjct: 5   RNIVVATGLVLFASAGLAFPFYMASSKQPVIDPTKPLPPQATFRGPYINTGSRDVGPDHR 64

Query: 115 TYTKK 120
           TY KK
Sbjct: 65  TYPKK 69

The following BLAST results are available for this feature:
BLAST of CmaCh20G005300 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh20G005300 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JB194.3e-30100.00uncharacterized protein LOC111484157 OS=Cucurbita maxima OX=3661 GN=LOC111484157... [more]
A0A6J1FTX81.2e-2998.53uncharacterized protein LOC111448766 OS=Cucurbita moschata OX=3662 GN=LOC1114487... [more]
A0A6J1CHR81.5e-2795.45uncharacterized protein LOC111011024 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
A0A1S3CQB93.4e-2793.94uncharacterized protein LOC103503042 OS=Cucumis melo OX=3656 GN=LOC103503042 PE=... [more]
A0A1J3ES061.3e-2679.75Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=LC_TR986... [more]
BLAST of CmaCh20G005300 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7010668.12.3e-3386.21hypothetical protein SDJN02_27463, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6570826.13.8e-3394.81hypothetical protein SDJN03_29741, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022986414.18.9e-30100.00uncharacterized protein LOC111484157 [Cucurbita maxima] >XP_022986415.1 uncharac... [more]
XP_022944261.12.6e-2998.53uncharacterized protein LOC111448766 [Cucurbita moschata] >XP_022944262.1 unchar... [more]
XP_023513377.15.7e-2997.06uncharacterized protein LOC111777879 [Cucurbita pepo subsp. pepo] >XP_023513378.... [more]
BLAST of CmaCh20G005300 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G22875.11.0e-2887.69unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G22875.21.0e-2887.69unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 95..119
NoneNo IPR availablePANTHERPTHR36070OSJNBA0019G23.7 PROTEINcoord: 42..119

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh20G005300.1CmaCh20G005300.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane