CmaCh20G005200 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh20G005200
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr20: 2510593 .. 2513242 (-)
RNA-Seq ExpressionCmaCh20G005200
SyntenyCmaCh20G005200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGGTCATGGCACCATGGCACGTGTCGTGTCTGCTTTGGCCTTGGGGGGTATGTTTCAGGTTCAACCGATCAGATTTTAACTGATCTCCATATTCCTTGCAATGCATAAAATGTTTTCCTGCTGTTGAGCCAAGAGTTTCATGGGCCCACATATGTTCTCAAATCACCTTTAACAATGTAGACGAAAATGTGAAATCAATTTTTGCGTTTCTTCTATCTCGACACTTGTAGTACATTACAAATTTTTGGATATTACATGAGCTGTTTCTCGTGTCACCTTTTATCTTTATAATTGTACATTATGTTCCTTTCTAGGGGACACTGGTATTGCAAACAGAAGAGTATTAAGCTCCATATGATATGCTTGTTTGTTTATGGATTTTAGTAGGCCTTTCCATGATGAGCCTGGACTTTGGCTTGAGAAGATCTGTCCAAATGAAGAGAACACAACATCCATAAGCCTTGGTCCGTATGATTGTTTGATCAAAGCAGTCATGACAAGTGGCCAAGCTGTGTAATACTGTATAGTCTTCCCTGTTGACGGGGGCAGAGACAGCCCGCGCAATCACATGAGGTTATGTGGAAAATGGCTTGTTTGCTTCTTCTATAGCCATTTTTGGTCAACTAGCAGAGATTTCTGGGAAACTTTGATCTCCTTCTCCTCATTTGGTAATGCTTATGCAATTTTTAAGGGTTGGTATGGTTCTGCATATTATCTGATGACTGTTATGAATGAAGCTCCCATTGGTACTTAAAACATGAGATTTTCCCCCAGATTTTAGCTGGGCGAGAACAAGAAAGCGAAGAACCAGGTGAGTCGTAGCTTCTTTGATCATGCCGGACTGTCCCCATCCTTTCCCAAAGATATAGAAACTCAGATATCAGATGTGAACACATGTTTTTATGCTTTTTCTTTGCGTTGTGAGGTTAATGGTTTTGTAAGTTGTGTTTTTGCTGTGTAATCTCAGACAAGTAATCAGACACGAGAAATCTCAGAATTGGAATTGCAACTTACATGGCTAAAACAATTCTGGAAAAATTTGACCCCGATTCTCAGACGGAGTATGAAAAAGAAGGACTTCACTGAGTCAAAGTGATGACAGCAGGGGGAGGGGTAGAGGGTAGAGGGAGACTTCTGTTGCAGATGCCTCGAACGTAGAAGGAGAGAGTTTCTTACCTATAACACATACCTCTGTACAAGCACTAAAATCAGCCACTAACCCAATTCTCTTTTCATCCTCATTAGCTCTTTACTAATATTAGACTATGATTATGTTTTTGCTGCTCTTTGTTTCTGTAGTGGTCAGCAGGGAGCAAGCCTTTGTGACTTCGTCTCTGTTGGAGAATCAGAGCCTTCCAAGAAAGCCCTTTTCCTGCTTCCACAGTTGGAAATCTGGCTGCTGCCATTGAAGGTGCCTAGAGAATCTCGGAGCATCTGTGGCGGAGGCGTCGAAGGAATTGTCACCGGAGGAATTTCAAAGGATTCAAGTGGTGGTGGTGGATGTCTCCACTCAGGCAGAGGTCCAGCTACAAGCAGTGTCTGAAGCAGAGGACCTGCTTTCATCACTGCTTCCAAGAGCTTGCCTTTTTCAGGCAATGGCTTCTCTGTAACCAAGTCTACCGCGGTGGGCAGAGCTGGAGGGAACTGTGGCGGCGGAATTGGGTCAATTGCAGGAGATGAGACAATGCTTTCTTCACAATCAGACGAGGAGAAGCCATTGATGGAATCAATACATTTCTTCGGTTCATCTTCAATGCTGGAAACTCCTGAATGTGGATCTGTTCGTTGGTGAAGTAAAAACTTCTCAATGAATAGTTTCTGAAACTTTTCATTGGCTTCATCTCTCTCTCTAATGGCTCTGCTAAAAAGATCTTTGAGATGAATCAACTGTTCATCTCTTTTTCTCAGCTCCTCTTGAACTGCAACTCTCGTCTGCTCCAGCTCCAGAGTCGCACAAAAAAGCGAATGCCTCAGTTCTTCAATGTTCTGTTTCGAAGCAAAATCATCATCATAACCAACTAAGAAATCACAAATGGAAACAAACCCAGAAGCCAAATTCTGCAAATAATTTAAGGTTTCTTTACCTTTCCTTGGAAAAAGTAAGCCCAACCCAGAAGAGCACTGCGTTGGTTCTCCATTACTGAGCTCCAAAAGCTTCAGAGAGAGAGAAAGAGAGAGAGAGGAATGCGGTTTCAGACTGACAGTTGAAGTTCTTATAAGAAATCCTTAACTGGCACTGTTTTCTTTTGACAGATTTGTTGCTTTTTGTGAAGAAAAAAGAAAGCAGAAACCGCCAAGAACGTAGCAGAACCCAATTCCTGACATCCTATGATCCTATCGTCCTGTCTCGGACTCCCACAGTTGCAGAAGGAACAATTCGCTAATTACAAGGTTAGAGATGAAATTACTTTTCCTAATCTCAATTAAAACGTTAATCCTTTGGCTGATAACTCATCTTTGAATTTTCTCACACGTGGGCTGCGTGCCTTCATAAGAAGTCCAAACTGGGTTTGTTTTTATCCCTCTCTTTCTCTCAATTAATGCTTTTATCACTTTGAATCATGTAATTTGCAGACCATGAATTTTCTCATCCAAGTTTTTATTTAATTTTAATTTTCTTAATTAGTACTCTAAATTCTAATTAG

mRNA sequence

ATGTCTGGTCATGGCACCATGGCACGTGTCGTGTCTGCTTTGGCCTTGGGGGACTATGATTATGTTTTTGCTGCTCTTTGTTTCTGTAGTGGTCAGCAGGGAGCAAGCCTTTGTGACTTCGTCTCTGTTGGAGAATCAGAGCCTTCCAAGAAAGCCCTTTTCCTGCTTCCACAGTTGGAAATCTGGCTGCTGCCATTGAAGGTGCCTAGAGAATCTCGGAGCATCTGTGGCGGAGGCGTCGAAGGAATTGTCACCGGAGGAATTTCAAAGGATTCAAGTGGTGGTGGTGGATGTCTCCACTCAGGCAGAGGCAATGGCTTCTCTGTAACCAAGTCTACCGCGGTGGGCAGAGCTGGAGGGAACTGTGGCGGCGGAATTGGGTCAATTGCAGGAGATGAGACAATGCTTTCTTCACAATCAGACGAGGAGAAGCCATTGATGGAATCAATACATTTCTTCGCTCCTCTTGAACTGCAACTCTCGTCTGCTCCAGCTCCAGAGTCGCACAAAAAAGCGAATGCCTCAGTTCTTCAATGTTCTGTTTCGAAGCAAAATCATCATCATAACCAACTAAGAAATCACAAATGGAAACAAACCCAGAAGCCAAATTCTGCAAATAATTTAAGTACTCTAAATTCTAATTAG

Coding sequence (CDS)

ATGTCTGGTCATGGCACCATGGCACGTGTCGTGTCTGCTTTGGCCTTGGGGGACTATGATTATGTTTTTGCTGCTCTTTGTTTCTGTAGTGGTCAGCAGGGAGCAAGCCTTTGTGACTTCGTCTCTGTTGGAGAATCAGAGCCTTCCAAGAAAGCCCTTTTCCTGCTTCCACAGTTGGAAATCTGGCTGCTGCCATTGAAGGTGCCTAGAGAATCTCGGAGCATCTGTGGCGGAGGCGTCGAAGGAATTGTCACCGGAGGAATTTCAAAGGATTCAAGTGGTGGTGGTGGATGTCTCCACTCAGGCAGAGGCAATGGCTTCTCTGTAACCAAGTCTACCGCGGTGGGCAGAGCTGGAGGGAACTGTGGCGGCGGAATTGGGTCAATTGCAGGAGATGAGACAATGCTTTCTTCACAATCAGACGAGGAGAAGCCATTGATGGAATCAATACATTTCTTCGCTCCTCTTGAACTGCAACTCTCGTCTGCTCCAGCTCCAGAGTCGCACAAAAAAGCGAATGCCTCAGTTCTTCAATGTTCTGTTTCGAAGCAAAATCATCATCATAACCAACTAAGAAATCACAAATGGAAACAAACCCAGAAGCCAAATTCTGCAAATAATTTAAGTACTCTAAATTCTAATTAG

Protein sequence

MSGHGTMARVVSALALGDYDYVFAALCFCSGQQGASLCDFVSVGESEPSKKALFLLPQLEIWLLPLKVPRESRSICGGGVEGIVTGGISKDSSGGGGCLHSGRGNGFSVTKSTAVGRAGGNCGGGIGSIAGDETMLSSQSDEEKPLMESIHFFAPLELQLSSAPAPESHKKANASVLQCSVSKQNHHHNQLRNHKWKQTQKPNSANNLSTLNSN
Homology
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BLAST of CmaCh20G005200 vs. NCBI nr
Match: KAG7035984.1 (hypothetical protein SDJN02_02784, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 91.3 bits (225), Expect = 1.1e-14
Identity = 49/64 (76.56%), Postives = 52/64 (81.25%), Query Frame = 0 

Query: 32 QQGASLCDFVSVGESEPSKKALFLLPQLEIWLLPLKVPRESRSICGGGVEGIVTGGISKD 91
          ++GASL  FVSVGESEPS KALFLLPQL + LL L V  ESR  CGGGVEG VTGGISKD
Sbjct: 30 ERGASLRHFVSVGESEPSNKALFLLPQLVMLLLRLNVTGESRRSCGGGVEGTVTGGISKD 89

Query: 92 SSGG 96
          SSGG
Sbjct: 90 SSGG 93

The following BLAST results are available for this feature:
BLAST of CmaCh20G005200 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh20G005200 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh20G005200 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7035984.11.1e-1476.56hypothetical protein SDJN02_02784, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmaCh20G005200 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 181..214
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 196..214

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh20G005200.1CmaCh20G005200.1mRNA