CmaCh20G004670 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh20G004670
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	LOB domain-containing protein
Location	Cma_Chr20: 2255365 .. 2257151 (+)
RNA-Seq Expression	CmaCh20G004670
Synteny	CmaCh20G004670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGATTTAACCATAATTTTCAAACTTCTTCAATTCATCGCCTTTTCTCTCTTCTCGTTCTTTTCTCTATTTATATCTCTGATTTTCCCTCTGAAACTCCAAATCATCTCTTCTTCTTTTCTTTGCTCCGATTCGTTGGAAATGGAAGGCAGTGATTCAATCATCACCCTTTCATCAACTCCACCATCTCAATCTCCTTCCTCTTCTTCTTCTCCGGCACCGCCACCGCCTGTCGTTCTCAGTCCATGTGCGGCCTGCAAGATTTTGAGGCGGCGATGTGCTGAGGGATGTGTATTGGCGCCCTATTTTCCTCCCACTGAGCCGGCGAAGTTCGCCATCGCTCATCGTGTTTTTGGCGCCAGCAATATCATCAAATTCTTGCAGGTCTTTTTTTCATCCGCTTTTTACAGTTCGTGAATTCGTGATTTCTGTTTCTTTTAACTGTGAATGATTTCTGACTGTTACGATCGCTTAGTTTGAAGATTAAATCAATGGATTAGGGCTGAAATGTATGAACTAAGGACCTTGTTGCTTCCATATTTTCCGTTTCACGTTAATTTGTATGTTAATATGAAACAAACTGTGAAAAGCCGTTTAAGGAGACTAACAGGATTGTCAAAAAAGAAGGCAAAAGATTTTACACATGGAGAAACTATGCAGTGAGATTTGGAAAATGAAATTTCTAAAGTTGTCTTTTCTTGAGATTTGTTAGAAGAGCCGTAAATTAATTGTGCAAGCAAAATGGATACATATGAGACTTTTCTATCTAACGTTTTGTTTGATCCTAATACTTTCTTCCTTGCGTCTTTTCAGCCACTTGACCGATTAAACATCTCAATATCGATCTCTATACTAAACGTTAGATTATATTTCGATTAACATGTTCACCTAATTTATAATATAGCTTTTTCAAGTGTGGAAGTTTGAAAAGTAGTTGAACCAATCCAACCATTGTTTCACACCAATACCTCTGGTTCTGTTTGTTTCATTCCTTTTGCCTCTTGAAAATCTAGCACAAAAAACTTCAAACAGAGAGAGATTGTCCATTACAGTTTACAATACAAGAAGAGCTCTCTGAAATATCCAATTTGTTATGAACTGAAAAATTTCTTGGGACATTGATTATACAGGAACTGCCAGAATCTCAAAGAGCAGATGCAGTGAGCAGCTTGGTTTATGAAGCGAGTGCGAGGATCAGAGATCCTGTTTACGGATCAGCAGGTGCCATTTGCCAACTCCAAAAGCAAGTCAATGAGCTTCAAGCACAGCTAGCCAAGGCCCAAGCAGAGGTCGTCAACATGCAATGCCAACAAGCCAATCTCGTGGCCTTCGTTTGCAGGGAATTAGCTCAATCTCATCAGTCTTCTTTTGATGATTTGAATGCCGACTCTCACAGTGGCTTATTCCACAGCATCAGCAGCCCAAGCTACTTTGATGATACCAATGTAAACCCACTGTGGGAACCTCTCTGGACATGAATTATGTTACCTTTTTTTGTGCATGTAAGGTGTTTGATAAAAAGTTCCAATGAAGTTTCTCCAAATTCAAGCCAATTTGTGCTTGTGGGTAGGAGAGACTTGGTGGAAAATACAACAGAATTTTACTTTCTTTCTTGTTTGGTCGATTTAGTACTCAAATGGACAAAAAAAGAGGGAAACCAAAGCTTCATTAGGGACACGTCTTTTTCCATAATCTCTCTGCTTAGGCCAAAAAAGAAGAAAAAAAAAACAATGCATCTGTCTTGGCATAATCAAAGTGAAAGCGAAGTATACCAATCAATACTATC

mRNA sequence

AAAAGATTTAACCATAATTTTCAAACTTCTTCAATTCATCGCCTTTTCTCTCTTCTCGTTCTTTTCTCTATTTATATCTCTGATTTTCCCTCTGAAACTCCAAATCATCTCTTCTTCTTTTCTTTGCTCCGATTCGTTGGAAATGGAAGGCAGTGATTCAATCATCACCCTTTCATCAACTCCACCATCTCAATCTCCTTCCTCTTCTTCTTCTCCGGCACCGCCACCGCCTGTCGTTCTCAGTCCATGTGCGGCCTGCAAGATTTTGAGGCGGCGATGTGCTGAGGGATGTGTATTGGCGCCCTATTTTCCTCCCACTGAGCCGGCGAAGTTCGCCATCGCTCATCGTGTTTTTGGCGCCAGCAATATCATCAAATTCTTGCAGGAACTGCCAGAATCTCAAAGAGCAGATGCAGTGAGCAGCTTGGTTTATGAAGCGAGTGCGAGGATCAGAGATCCTGTTTACGGATCAGCAGGTGCCATTTGCCAACTCCAAAAGCAAGTCAATGAGCTTCAAGCACAGCTAGCCAAGGCCCAAGCAGAGGTCGTCAACATGCAATGCCAACAAGCCAATCTCGTGGCCTTCGTTTGCAGGGAATTAGCTCAATCTCATCAGTCTTCTTTTGATGATTTGAATGCCGACTCTCACAGTGGCTTATTCCACAGCATCAGCAGCCCAAGCTACTTTGATGATACCAATGTAAACCCACTGTGGGAACCTCTCTGGACATGAATTATGTTACCTTTTTTTGTGCATGTAAGGTGTTTGATAAAAAGTTCCAATGAAGTTTCTCCAAATTCAAGCCAATTTGTGCTTGTGGGTAGGAGAGACTTGGTGGAAAATACAACAGAATTTTACTTTCTTTCTTGTTTGGTCGATTTAGTACTCAAATGGACAAAAAAAGAGGGAAACCAAAGCTTCATTAGGGACACGTCTTTTTCCATAATCTCTCTGCTTAGGCCAAAAAAGAAGAAAAAAAAAACAATGCATCTGTCTTGGCATAATCAAAGTGAAAGCGAAGTATACCAATCAATACTATC

Coding sequence (CDS)

ATGGAAGGCAGTGATTCAATCATCACCCTTTCATCAACTCCACCATCTCAATCTCCTTCCTCTTCTTCTTCTCCGGCACCGCCACCGCCTGTCGTTCTCAGTCCATGTGCGGCCTGCAAGATTTTGAGGCGGCGATGTGCTGAGGGATGTGTATTGGCGCCCTATTTTCCTCCCACTGAGCCGGCGAAGTTCGCCATCGCTCATCGTGTTTTTGGCGCCAGCAATATCATCAAATTCTTGCAGGAACTGCCAGAATCTCAAAGAGCAGATGCAGTGAGCAGCTTGGTTTATGAAGCGAGTGCGAGGATCAGAGATCCTGTTTACGGATCAGCAGGTGCCATTTGCCAACTCCAAAAGCAAGTCAATGAGCTTCAAGCACAGCTAGCCAAGGCCCAAGCAGAGGTCGTCAACATGCAATGCCAACAAGCCAATCTCGTGGCCTTCGTTTGCAGGGAATTAGCTCAATCTCATCAGTCTTCTTTTGATGATTTGAATGCCGACTCTCACAGTGGCTTATTCCACAGCATCAGCAGCCCAAGCTACTTTGATGATACCAATGTAAACCCACTGTGGGAACCTCTCTGGACATGA

Protein sequence

MEGSDSIITLSSTPPSQSPSSSSSPAPPPPVVLSPCAACKILRRRCAEGCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQSSFDDLNADSHSGLFHSISSPSYFDDTNVNPLWEPLWT

Homology

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BLAST of CmaCh20G004670 vs. ExPASy Swiss-Prot
Match: Q9LQR0 (LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.2e-52
Identity = 119/186 (63.98%), Postives = 141/186 (75.81%), Query Frame = 0


Query: 12  STPPSQSPSSSSSPAPPPPVVLSPCAACKILRRRCAEGCVLAPYFPPTEPAKFAIAHRVF 71
           +T P  S SSS  P+  P VVLSPCAACKILRRRCAE CVLAPYFPPT+PAKF IAHRVF
Sbjct: 10  ATTPIISSSSSPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVF 69

Query: 72  GASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQVNELQAQLAKA 131
           GASNIIKFLQELPESQR DAV+S+VYEA ARIRDPVYG AGAI  LQ+QV+ELQAQLAKA
Sbjct: 70  GASNIIKFLQELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKA 129

Query: 132 QAEVVNMQCQQANLVAFVCRELAQSHQSSFDDLNADSHSGLFHSISSPSYFDDTNVNPL- 191
           Q E+VNMQ Q++NL+  +   + Q  +   D+++ +S+   F    S     +TN + L 
Sbjct: 130 QVEMVNMQFQRSNLLELI-YNMDQQQKQEQDNMSFESNDLGFLEDKS-----NTNSSMLW 189

Query: 192 WEPLWT 197
           W+PLWT
Sbjct: 190 WDPLWT 189

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BLAST of CmaCh20G004670 vs. ExPASy Swiss-Prot
Match: Q9SK08 (LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 SV=2)

HSP 1 Score: 202.2 bits (513), Expect = 5.4e-51
Identity = 120/209 (57.42%), Postives = 140/209 (66.99%), Query Frame = 0


Query: 12  STPPSQSPSSSSSPAPP--------PPVVLSPCAACKILRRRCAEGCVLAPYFPPTEPAK 71
           +T P  SPS +SSP PP        PPVVLSPCAACKILRRRCA+ CVLAPYFPPT+PAK
Sbjct: 24  TTTPVNSPSPTSSPPPPPSPQQPPQPPVVLSPCAACKILRRRCADKCVLAPYFPPTDPAK 83

Query: 72  FAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQVNE 131
           F IAHRVFGASNIIKFLQELPESQR DAV+S+VYEA AR+RDPVYG AGAI  LQ+QV+E
Sbjct: 84  FTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQVSE 143

Query: 132 LQAQLAKAQAEVVNMQCQQANLVAFVCR----ELAQSHQSSFDDLNADSHSGLFHSISSP 191
           LQAQLAK Q E+V MQ Q+++L+  +      +L+   Q         S       ISSP
Sbjct: 144 LQAQLAKTQVELVGMQLQRSSLLELIYNMEQTKLSVQEQGQQKMSFESSFESGDEFISSP 203

Query: 192 -------SYFDDTNVN-----PLWEPLWT 197
                   + +D N N       W+PLWT
Sbjct: 204 DEESNDLGFLEDNNNNNNSSMSWWDPLWT 232

[Close]

BLAST of CmaCh20G004670 vs. ExPASy Swiss-Prot
Match: Q9SHE9 (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.3e-36
Identity = 87/166 (52.41%), Postives = 112/166 (67.47%), Query Frame = 0


Query: 34  SPCAACKILRRRCAEGCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQELPESQRADAVS 93
           SPCAACK+LRRRCA+ CV +PYFP  EP KFA  HRVFGASN+ K LQELP  QR DAVS
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query: 94  SLVYEASARIRDPVYGSAGAICQLQKQVNELQAQLAKAQAEVVNMQCQQANLVA--FVCR 153
           S+VYEA+AR+RDPVYG  GAI  LQ+Q++ LQAQLA AQAEVV+++ +Q+       +C 
Sbjct: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQSTNFPGHGLCP 131

Query: 154 ELAQSHQS-SFDDLNADSHSGLFHSISSPSYFDDTNVNPLWEPLWT 197
           +   S  S S   ++   + G+F      S+ D  +   L E +W+
Sbjct: 132 DSPSSSGSPSSKQVSPQDNKGMF------SHMDIVDEASLGESMWS 171

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BLAST of CmaCh20G004670 vs. ExPASy Swiss-Prot
Match: Q8LBW3 (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 153.3 bits (386), Expect = 2.9e-36
Identity = 83/164 (50.61%), Postives = 111/164 (67.68%), Query Frame = 0


Query: 34  SPCAACKILRRRCAEGCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQELPESQRADAVS 93
           SPCA+CK+LRRRCA+ C+ APYFPP +P KFAI H+VFGASN+ K LQELP  QRADAV+
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 94  SLVYEASARIRDPVYGSAGAICQLQKQVNELQAQLAKAQAEVVNMQCQQANLVA--FVCR 153
           SLV+EA+AR+RDPVYG  GAI  LQ QV++LQ QLA AQAE++ +Q Q    +       
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPTLQSHHQVL 126

Query: 154 ELAQSHQ------SSFDDLNADSHSGLFHSISSPSYFDDTNVNP 190
           EL Q H+      ++ ++ N ++++  F    S   F+    +P
Sbjct: 127 ELDQDHKALLLNNNNINNCNTNNNNNNFGYAMSSGQFNSNFASP 170

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BLAST of CmaCh20G004670 vs. ExPASy Swiss-Prot
Match: Q8L5T5 (LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 SV=2)

HSP 1 Score: 136.7 bits (343), Expect = 2.8e-31
Identity = 70/122 (57.38%), Postives = 89/122 (72.95%), Query Frame = 0


Query: 25  PAPPPPVVL---SPCAACKILRRRCAEGCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQ 84
           P   PP  L   +PCAACK+LRRRCA+ C  +PYF P EP KFA  H+VFGASN+ K L 
Sbjct: 32  PMSGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLM 91

Query: 85  ELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQVNELQAQLAKAQAEVVNMQCQ 144
           E+PESQRADA +SLVYEA+ R+RDPVYG  GAI  LQ+QV  LQA+L   ++E++  + +
Sbjct: 92  EVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQR 151

[Close]

BLAST of CmaCh20G004670 vs. ExPASy TrEMBL
Match: A0A6J1J8I0 (LOB domain-containing protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111483579 PE=3 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 1.8e-102
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0


Query: 1   MEGSDSIITLSSTPPSQSPSSSSSPAPPPPVVLSPCAACKILRRRCAEGCVLAPYFPPTE 60
           MEGSDSIITLSSTPPSQSPSSSSSPAPPPPVVLSPCAACKILRRRCAEGCVLAPYFPPTE
Sbjct: 1   MEGSDSIITLSSTPPSQSPSSSSSPAPPPPVVLSPCAACKILRRRCAEGCVLAPYFPPTE 60

Query: 61  PAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQ 120
           PAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQ
Sbjct: 61  PAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQ 120

Query: 121 VNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQSSFDDLNADSHSGLFHSISSPS 180
           VNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQSSFDDLNADSHSGLFHSISSPS
Sbjct: 121 VNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQSSFDDLNADSHSGLFHSISSPS 180

Query: 181 YFDDTNVNPLWEPLWT 197
           YFDDTNVNPLWEPLWT
Sbjct: 181 YFDDTNVNPLWEPLWT 196

[Close]

BLAST of CmaCh20G004670 vs. ExPASy TrEMBL
Match: A0A6J1FT49 (LOB domain-containing protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111448531 PE=3 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 1.8e-102
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0


Query: 1   MEGSDSIITLSSTPPSQSPSSSSSPAPPPPVVLSPCAACKILRRRCAEGCVLAPYFPPTE 60
           MEGSDSIITLSSTPPSQSPSSSSSPAPPPPVVLSPCAACKILRRRCAEGCVLAPYFPPTE
Sbjct: 1   MEGSDSIITLSSTPPSQSPSSSSSPAPPPPVVLSPCAACKILRRRCAEGCVLAPYFPPTE 60

Query: 61  PAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQ 120
           PAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQ
Sbjct: 61  PAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQ 120

Query: 121 VNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQSSFDDLNADSHSGLFHSISSPS 180
           VNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQSSFDDLNADSHSGLFHSISSPS
Sbjct: 121 VNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQSSFDDLNADSHSGLFHSISSPS 180

Query: 181 YFDDTNVNPLWEPLWT 197
           YFDDTNVNPLWEPLWT
Sbjct: 181 YFDDTNVNPLWEPLWT 196

[Close]

BLAST of CmaCh20G004670 vs. ExPASy TrEMBL
Match: A0A5D3CSE3 (LOB domain-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G00590 PE=3 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 9.7e-88
Identity = 178/199 (89.45%), Postives = 184/199 (92.46%), Query Frame = 0


Query: 1   MEGSDS--IITLSSTPPSQSPSSSSSPAPPPPVVLSPCAACKILRRRCAEGCVLAPYFPP 60
           MEGSDS  I T+SSTP SQSPSSSSSPAPPPPV+LSPCAACKILRRRCAE CVLAPYFPP
Sbjct: 1   MEGSDSLTITTVSSTPLSQSPSSSSSPAPPPPVILSPCAACKILRRRCAERCVLAPYFPP 60

Query: 61  TEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQ 120
           TEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQ
Sbjct: 61  TEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQ 120

Query: 121 KQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQSSFDDLNADSHSGLFHSISS 180
           KQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQ SFD+ N   H+GL  SI+ 
Sbjct: 121 KQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQ-SFDEFNGSPHNGLLQSINP 180

Query: 181 PSYFDDT-NVNPLWEPLWT 197
           PSYFDD+ NVN LWEPLWT
Sbjct: 181 PSYFDDSNNVNSLWEPLWT 198

[Close]

BLAST of CmaCh20G004670 vs. ExPASy TrEMBL
Match: A0A1S3CKA7 (LOB domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501920 PE=3 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 9.7e-88
Identity = 178/199 (89.45%), Postives = 184/199 (92.46%), Query Frame = 0


Query: 1   MEGSDS--IITLSSTPPSQSPSSSSSPAPPPPVVLSPCAACKILRRRCAEGCVLAPYFPP 60
           MEGSDS  I T+SSTP SQSPSSSSSPAPPPPV+LSPCAACKILRRRCAE CVLAPYFPP
Sbjct: 1   MEGSDSLTITTVSSTPLSQSPSSSSSPAPPPPVILSPCAACKILRRRCAERCVLAPYFPP 60

Query: 61  TEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQ 120
           TEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQ
Sbjct: 61  TEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQ 120

Query: 121 KQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQSSFDDLNADSHSGLFHSISS 180
           KQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQ SFD+ N   H+GL  SI+ 
Sbjct: 121 KQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQ-SFDEFNGSPHNGLLQSINP 180

Query: 181 PSYFDDT-NVNPLWEPLWT 197
           PSYFDD+ NVN LWEPLWT
Sbjct: 181 PSYFDDSNNVNSLWEPLWT 198

[Close]

BLAST of CmaCh20G004670 vs. ExPASy TrEMBL
Match: A0A0A0KCM5 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G290790 PE=3 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 1.2e-85
Identity = 176/201 (87.56%), Postives = 184/201 (91.54%), Query Frame = 0


Query: 1   MEGSDSI--ITLSSTPPSQSPSSSSSPAPPPPVVLSPCAACKILRRRCAEGCVLAPYFPP 60
           MEGSD+I   T+SSTP SQSPSSSSSPAPPPPV+LSPCAACKILRRRCAE CVLAPYFPP
Sbjct: 1   MEGSDTITVTTVSSTPLSQSPSSSSSPAPPPPVILSPCAACKILRRRCAERCVLAPYFPP 60

Query: 61  TEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQ 120
           +EPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASAR+RDPVYGSAGAICQLQ
Sbjct: 61  SEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARVRDPVYGSAGAICQLQ 120

Query: 121 KQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQSSFDDLNA--DSHSGLFHSI 180
           KQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQ SFD+ N    SH+GL  SI
Sbjct: 121 KQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQ-SFDEFNGSPQSHNGLLQSI 180

Query: 181 SSPSYFDDT-NVNPLWEPLWT 197
             PSYFDD+ NVN LWEPLWT
Sbjct: 181 HPPSYFDDSNNVNSLWEPLWT 200

[Close]

BLAST of CmaCh20G004670 vs. NCBI nr
Match: XP_022943961.1 (LOB domain-containing protein 1-like [Cucurbita moschata] >XP_022985541.1 LOB domain-containing protein 1 [Cucurbita maxima])

HSP 1 Score: 381.7 bits (979), Expect = 3.8e-102
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0


Query: 1   MEGSDSIITLSSTPPSQSPSSSSSPAPPPPVVLSPCAACKILRRRCAEGCVLAPYFPPTE 60
           MEGSDSIITLSSTPPSQSPSSSSSPAPPPPVVLSPCAACKILRRRCAEGCVLAPYFPPTE
Sbjct: 1   MEGSDSIITLSSTPPSQSPSSSSSPAPPPPVVLSPCAACKILRRRCAEGCVLAPYFPPTE 60

Query: 61  PAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQ 120
           PAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQ
Sbjct: 61  PAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQ 120

Query: 121 VNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQSSFDDLNADSHSGLFHSISSPS 180
           VNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQSSFDDLNADSHSGLFHSISSPS
Sbjct: 121 VNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQSSFDDLNADSHSGLFHSISSPS 180

Query: 181 YFDDTNVNPLWEPLWT 197
           YFDDTNVNPLWEPLWT
Sbjct: 181 YFDDTNVNPLWEPLWT 196

[Close]

BLAST of CmaCh20G004670 vs. NCBI nr
Match: XP_023512010.1 (LOB domain-containing protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 376.3 bits (965), Expect = 1.6e-100
Identity = 194/196 (98.98%), Postives = 194/196 (98.98%), Query Frame = 0


Query: 1   MEGSDSIITLSSTPPSQSPSSSSSPAPPPPVVLSPCAACKILRRRCAEGCVLAPYFPPTE 60
           MEGSDSIITLSSTPPS SPSSSSSPAPPPPVVLSPCAACKILRRRCAEGCVLAPYFPPTE
Sbjct: 1   MEGSDSIITLSSTPPSPSPSSSSSPAPPPPVVLSPCAACKILRRRCAEGCVLAPYFPPTE 60

Query: 61  PAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQ 120
           PAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQ
Sbjct: 61  PAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQ 120

Query: 121 VNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQSSFDDLNADSHSGLFHSISSPS 180
           VNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQSSFDDLNADSHSGLF SISSPS
Sbjct: 121 VNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQSSFDDLNADSHSGLFQSISSPS 180

Query: 181 YFDDTNVNPLWEPLWT 197
           YFDDTNVNPLWEPLWT
Sbjct: 181 YFDDTNVNPLWEPLWT 196

[Close]

BLAST of CmaCh20G004670 vs. NCBI nr
Match: KAG6570762.1 (LOB domain-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010608.1 LOB domain-containing protein 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 375.6 bits (963), Expect = 2.7e-100
Identity = 195/198 (98.48%), Postives = 196/198 (98.99%), Query Frame = 0


Query: 1   MEGSDSIITLSSTPPSQSPSSSSSPA--PPPPVVLSPCAACKILRRRCAEGCVLAPYFPP 60
           MEGSDSIITLSSTPPSQSPSSSSSPA  PPPPVVLSPCAACKILRRRCAEGCVLAPYFPP
Sbjct: 1   MEGSDSIITLSSTPPSQSPSSSSSPAPPPPPPVVLSPCAACKILRRRCAEGCVLAPYFPP 60

Query: 61  TEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQ 120
           TEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQ
Sbjct: 61  TEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQ 120

Query: 121 KQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQSSFDDLNADSHSGLFHSISS 180
           KQVNELQAQLAKAQAEVVNMQCQQANLVAFVC+ELAQSHQSSFDDLNADSHSGLFHSISS
Sbjct: 121 KQVNELQAQLAKAQAEVVNMQCQQANLVAFVCKELAQSHQSSFDDLNADSHSGLFHSISS 180

Query: 181 PSYFDDTNVNPLWEPLWT 197
           PSYFDDTNVNPLWEPLWT
Sbjct: 181 PSYFDDTNVNPLWEPLWT 198

[Close]

BLAST of CmaCh20G004670 vs. NCBI nr
Match: XP_038902542.1 (LOB domain-containing protein 1 [Benincasa hispida])

HSP 1 Score: 333.6 bits (854), Expect = 1.2e-87
Identity = 179/197 (90.86%), Postives = 184/197 (93.40%), Query Frame = 0


Query: 1   MEGSDSIITLSSTPPSQSPSSSSSPAP-PPPVVLSPCAACKILRRRCAEGCVLAPYFPPT 60
           MEGSDS+ T+SSTP SQSPSSSSS AP PPPVVLSPCAACKILRRRCAE CVLAPYFPPT
Sbjct: 1   MEGSDSVTTVSSTPLSQSPSSSSSLAPSPPPVVLSPCAACKILRRRCAERCVLAPYFPPT 60

Query: 61  EPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQK 120
           EPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQK
Sbjct: 61  EPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQK 120

Query: 121 QVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQSSFDDLNADSHSGLFHSISSP 180
           QVNELQAQLAKAQAEVVNMQCQQANLV+FVCRELAQSHQ SFDD N   H+GLF SI SP
Sbjct: 121 QVNELQAQLAKAQAEVVNMQCQQANLVSFVCRELAQSHQ-SFDDFNGSPHNGLFQSI-SP 180

Query: 181 SYFDDTNVNPLWEPLWT 197
           SYFDD+NVN LWEPLWT
Sbjct: 181 SYFDDSNVNSLWEPLWT 195

[Close]

BLAST of CmaCh20G004670 vs. NCBI nr
Match: XP_008463908.1 (PREDICTED: LOB domain-containing protein 1-like [Cucumis melo] >KAA0035306.1 LOB domain-containing protein 1-like [Cucumis melo var. makuwa] >TYK14330.1 LOB domain-containing protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 332.8 bits (852), Expect = 2.0e-87
Identity = 178/199 (89.45%), Postives = 184/199 (92.46%), Query Frame = 0


Query: 1   MEGSDS--IITLSSTPPSQSPSSSSSPAPPPPVVLSPCAACKILRRRCAEGCVLAPYFPP 60
           MEGSDS  I T+SSTP SQSPSSSSSPAPPPPV+LSPCAACKILRRRCAE CVLAPYFPP
Sbjct: 1   MEGSDSLTITTVSSTPLSQSPSSSSSPAPPPPVILSPCAACKILRRRCAERCVLAPYFPP 60

Query: 61  TEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQ 120
           TEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQ
Sbjct: 61  TEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQ 120

Query: 121 KQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQSSFDDLNADSHSGLFHSISS 180
           KQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQ SFD+ N   H+GL  SI+ 
Sbjct: 121 KQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQ-SFDEFNGSPHNGLLQSINP 180

Query: 181 PSYFDDT-NVNPLWEPLWT 197
           PSYFDD+ NVN LWEPLWT
Sbjct: 181 PSYFDDSNNVNSLWEPLWT 198

[Close]

BLAST of CmaCh20G004670 vs. TAIR 10
Match: AT1G07900.1 (LOB domain-containing protein 1 )

HSP 1 Score: 206.8 bits (525), Expect = 1.5e-53
Identity = 119/186 (63.98%), Postives = 141/186 (75.81%), Query Frame = 0


Query: 12  STPPSQSPSSSSSPAPPPPVVLSPCAACKILRRRCAEGCVLAPYFPPTEPAKFAIAHRVF 71
           +T P  S SSS  P+  P VVLSPCAACKILRRRCAE CVLAPYFPPT+PAKF IAHRVF
Sbjct: 10  ATTPIISSSSSPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVF 69

Query: 72  GASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQVNELQAQLAKA 131
           GASNIIKFLQELPESQR DAV+S+VYEA ARIRDPVYG AGAI  LQ+QV+ELQAQLAKA
Sbjct: 70  GASNIIKFLQELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKA 129

Query: 132 QAEVVNMQCQQANLVAFVCRELAQSHQSSFDDLNADSHSGLFHSISSPSYFDDTNVNPL- 191
           Q E+VNMQ Q++NL+  +   + Q  +   D+++ +S+   F    S     +TN + L 
Sbjct: 130 QVEMVNMQFQRSNLLELI-YNMDQQQKQEQDNMSFESNDLGFLEDKS-----NTNSSMLW 189

Query: 192 WEPLWT 197
           W+PLWT
Sbjct: 190 WDPLWT 189

[Close]

BLAST of CmaCh20G004670 vs. TAIR 10
Match: AT2G28500.1 (LOB domain-containing protein 11 )

HSP 1 Score: 202.2 bits (513), Expect = 3.8e-52
Identity = 120/209 (57.42%), Postives = 140/209 (66.99%), Query Frame = 0


Query: 12  STPPSQSPSSSSSPAPP--------PPVVLSPCAACKILRRRCAEGCVLAPYFPPTEPAK 71
           +T P  SPS +SSP PP        PPVVLSPCAACKILRRRCA+ CVLAPYFPPT+PAK
Sbjct: 24  TTTPVNSPSPTSSPPPPPSPQQPPQPPVVLSPCAACKILRRRCADKCVLAPYFPPTDPAK 83

Query: 72  FAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQVNE 131
           F IAHRVFGASNIIKFLQELPESQR DAV+S+VYEA AR+RDPVYG AGAI  LQ+QV+E
Sbjct: 84  FTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQVSE 143

Query: 132 LQAQLAKAQAEVVNMQCQQANLVAFVCR----ELAQSHQSSFDDLNADSHSGLFHSISSP 191
           LQAQLAK Q E+V MQ Q+++L+  +      +L+   Q         S       ISSP
Sbjct: 144 LQAQLAKTQVELVGMQLQRSSLLELIYNMEQTKLSVQEQGQQKMSFESSFESGDEFISSP 203

Query: 192 -------SYFDDTNVN-----PLWEPLWT 197
                   + +D N N       W+PLWT
Sbjct: 204 DEESNDLGFLEDNNNNNNSSMSWWDPLWT 232

[Close]

BLAST of CmaCh20G004670 vs. TAIR 10
Match: AT1G31320.1 (LOB domain-containing protein 4 )

HSP 1 Score: 154.5 bits (389), Expect = 9.1e-38
Identity = 87/166 (52.41%), Postives = 112/166 (67.47%), Query Frame = 0


Query: 34  SPCAACKILRRRCAEGCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQELPESQRADAVS 93
           SPCAACK+LRRRCA+ CV +PYFP  EP KFA  HRVFGASN+ K LQELP  QR DAVS
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query: 94  SLVYEASARIRDPVYGSAGAICQLQKQVNELQAQLAKAQAEVVNMQCQQANLVA--FVCR 153
           S+VYEA+AR+RDPVYG  GAI  LQ+Q++ LQAQLA AQAEVV+++ +Q+       +C 
Sbjct: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQSTNFPGHGLCP 131

Query: 154 ELAQSHQS-SFDDLNADSHSGLFHSISSPSYFDDTNVNPLWEPLWT 197
           +   S  S S   ++   + G+F      S+ D  +   L E +W+
Sbjct: 132 DSPSSSGSPSSKQVSPQDNKGMF------SHMDIVDEASLGESMWS 171

[Close]

BLAST of CmaCh20G004670 vs. TAIR 10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 153.3 bits (386), Expect = 2.0e-37
Identity = 83/164 (50.61%), Postives = 111/164 (67.68%), Query Frame = 0


Query: 34  SPCAACKILRRRCAEGCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQELPESQRADAVS 93
           SPCA+CK+LRRRCA+ C+ APYFPP +P KFAI H+VFGASN+ K LQELP  QRADAV+
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 94  SLVYEASARIRDPVYGSAGAICQLQKQVNELQAQLAKAQAEVVNMQCQQANLVA--FVCR 153
           SLV+EA+AR+RDPVYG  GAI  LQ QV++LQ QLA AQAE++ +Q Q    +       
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPTLQSHHQVL 126

Query: 154 ELAQSHQ------SSFDDLNADSHSGLFHSISSPSYFDDTNVNP 190
           EL Q H+      ++ ++ N ++++  F    S   F+    +P
Sbjct: 127 ELDQDHKALLLNNNNINNCNTNNNNNNFGYAMSSGQFNSNFASP 170

[Close]

BLAST of CmaCh20G004670 vs. TAIR 10
Match: AT2G40470.1 (LOB domain-containing protein 15 )

HSP 1 Score: 136.7 bits (343), Expect = 2.0e-32
Identity = 70/122 (57.38%), Postives = 89/122 (72.95%), Query Frame = 0


Query: 25  PAPPPPVVL---SPCAACKILRRRCAEGCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQ 84
           P   PP  L   +PCAACK+LRRRCA+ C  +PYF P EP KFA  H+VFGASN+ K L 
Sbjct: 32  PMSGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLM 91

Query: 85  ELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQVNELQAQLAKAQAEVVNMQCQ 144
           E+PESQRADA +SLVYEA+ R+RDPVYG  GAI  LQ+QV  LQA+L   ++E++  + +
Sbjct: 92  EVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQR 151

The following BLAST results are available for this feature:

BLAST of CmaCh20G004670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LQR0	2.2e-52	63.98	LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=...	[more]
Q9SK08	5.4e-51	57.42	LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 S...	[more]
Q9SHE9	1.3e-36	52.41	LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=...	[more]
Q8LBW3	2.9e-36	50.61	LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S...	[more]
Q8L5T5	2.8e-31	57.38	LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 S...	[more]

BLAST of CmaCh20G004670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J8I0	1.8e-102	100.00	LOB domain-containing protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111483579 PE=3...	[more]
A0A6J1FT49	1.8e-102	100.00	LOB domain-containing protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC1114485...	[more]
A0A5D3CSE3	9.7e-88	89.45	LOB domain-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3CKA7	9.7e-88	89.45	LOB domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501920 PE=...	[more]
A0A0A0KCM5	1.2e-85	87.56	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G290790 PE=3 SV...	[more]

BLAST of CmaCh20G004670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943961.1	3.8e-102	100.00	LOB domain-containing protein 1-like [Cucurbita moschata] >XP_022985541.1 LOB do...	[more]
XP_023512010.1	1.6e-100	98.98	LOB domain-containing protein 1-like [Cucurbita pepo subsp. pepo]	[more]
KAG6570762.1	2.7e-100	98.48	LOB domain-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia]...	[more]
XP_038902542.1	1.2e-87	90.86	LOB domain-containing protein 1 [Benincasa hispida]	[more]
XP_008463908.1	2.0e-87	89.45	PREDICTED: LOB domain-containing protein 1-like [Cucumis melo] >KAA0035306.1 LOB...	[more]

BLAST of CmaCh20G004670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07900.1	1.5e-53	63.98	LOB domain-containing protein 1	[more]
AT2G28500.1	3.8e-52	57.42	LOB domain-containing protein 11	[more]
AT1G31320.1	9.1e-38	52.41	LOB domain-containing protein 4	[more]
AT2G30130.1	2.0e-37	50.61	Lateral organ boundaries (LOB) domain family protein	[more]
AT2G40470.1	2.0e-32	57.38	LOB domain-containing protein 15	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 114..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 11..193
None	No IPR available	PANTHER	PTHR31301:SF141	LOB DOMAIN-CONTAINING PROTEIN 1-LIKE	coord: 11..193
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 35..132 e-value: 2.5E-41 score: 140.3
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 34..135 score: 26.162035

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh20G004670.1	CmaCh20G004670.1	mRNA